BAC Information

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BAC

Clone NameB6Ng01-082D08
Chromosome18 (Build37)
Map Location 17,135,448 - 17,136,546
singlet/doubletsinglet
Overlap genenone
Upstream geneEG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
Downstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D08.bB6Ng01-082D08.g
ACCDH896833DH896834
length1,1461,230
definitionDH896833|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D08, 5' end.DH896834|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagcagaggaacagggaaaccttgaatggcaaagaaaaactta
aaatagtgttcaaagtccttagtcatcagggaaatgcaaaacaaagcaac
cctgaaattctacctcacaccaatcagaatggctaagatcaaaaactcaa
tcgataacaaatactggtgaagatatggagaaagcactcttttatcgctg
gtgggattgcaaacttatacaaccactctgggaaccaatatggcagtttc
ttagaaaatagaaaataattctacctgaagacccagctatggcactcctg
gacatagaagcataagatgtttcgccattctcccaaggacatgtatccac
tatgtccatagccactttatttgtaatagccagaaattgtaaactgaatg
aattcccatcatccaggaaataaaggcaggaagaacaaaagtttaatgtc
attcttcagtataaagtgaaatcaaagccatcccaggcggcctgagactc
tgtctcaaagacaaaatcaacaacaacaaaaatttaaaaacaacaacaac
aacaaaaatgatacaaaaatttcaaacacttgtgatttagagtatctcat
attttttatttgtgctagataaatacatattgtagtttgactaatttttt
aaaaaagctcatttcactagacatacttttaaacaagtaattataattta
gattcgtagcaacatgcctttgttgctgggcactggggaaatttgttaca
gcaggtccagtgtgtgcagctttcctaagttagccagaaacttaaccatc
aaatactacagtgataatgaaactcaaggctcaaaggacaggacaaagat
tattccatataatgtattatgcatcaatagtttcaggcaggcgaacacca
caagcctttcaggccatgacaacagagttagtgaaaggatattaactctt
actgatttagaaatggaaaatagagagaaaaaaaaacagagaccaaagag
tatatctcttattttcctcctccctccttttctcgttcctctttctgtcc
cccatctctctgtctctgtctcttcttctatccctcctccgtctccctct
ccctacctctctttcccctccttttccccctttttctcttttctct
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagctggacgcaataagtggcgccgaagaacccagg
aactgtcatcacaccggcgcaaggaagatccctcgttcgcggggcagaat
cagaaccgtgggacaaaaggctctacaaggtacgtacaatcttgaaattt
cttcagagttagaagcccttttgattgtttgcacggcgattacacttttc
ctttcggtttcattttgtttccaccactggaactgctgactggttcttag
tcgcggtcaggcctggacagcgcctggacagtgaccaatttcagtcgcgg
tcaggcctgaacagcggcagtatgggaatctcccattcttacgctcccag
ccttacgcttggtcttgaagcagtgtggcctaaaaatcaccactaagacc
ttagagggatttgtcagagagatagaccgtgtcgtaccatggtatgcttg
ctcagggtcattaactgtcgcctcttgggacaaactgaaaggagatctag
ttagggaacagcagaaaggcaaacttaaagcagggattatgccgctatgg
aaattggtgaaatcgtgtttaacagatgaggattgtcagcaaatggtaga
agcggggcagaaagttctggacaaattcaagaagtctatcagaggtagag
cggggagagaagtaaaagtagagaggaaacaaagtgcactgaagaattta
ggcctttccacgggccttgagcttgaggaaagagatataaaggaagatcc
ttggggagagatagaaaaaggatgaaagggagagagaggagatcgagctg
agaggcacatagaaaggagctctacgccctggttgatttaagcgctactt
ctagtactcagaacgatgaaggactagcgctcgaagatggactcgaggag
ggagacatcgttaaagggagaaaggtccagctagataatgtaagctctac
gtaaatgcattgcctgtaagctcttgcctgctcgacgtggcgtctggtct
agtacctccttatagtgcaagatgatggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17135448_17136546
seq2: B6Ng01-082D08.b_100_1189 (reverse)

seq1  AGAGAAAAGAGGAGAAAGAGGAA----GGGGGAAAGAGAGGTAGGGAGAG  46
      ||||||||||| | || | ||||     ||||||||||||||||||||||
seq2  AGAGAAAAGAGAAAAAGGGGGAAAAGGAGGGGAAAGAGAGGTAGGGAGAG  50

seq1  GGAGAAGGGAGGAGGGGATAGAAGAAAGAGACAGAGACAGAGAGAATGTG  96
      |||| | |||||| |||||||||| ||||||||||||||||||| ||| |
seq2  GGAG-ACGGAGGA-GGGATAGAAG-AAGAGACAGAGACAGAGAG-ATG-G  95

seq1  GGGACAGAAAGAGGAACGAGAAAAAGGAGGGAGAGAGAAAATAAGAGAAT  146
      |||||||||||||||||||| ||||||||||||   ||||||||||| ||
seq2  GGGACAGAAAGAGGAACGAG-AAAAGGAGGGAGGAGGAAAATAAGAG-AT  143

seq1  ATACTCTTTGGTCTCTGTTTTTTTTTTCTTCTTCTATTTTTCCATTTCTT  196
      ||||||||||||||||| |||||||||||   |||| ||||||||||| |
seq2  ATACTCTTTGGTCTCTG-TTTTTTTTTCT--CTCTA-TTTTCCATTTC-T  188

seq1  AAATCAGTTAAGAGTTAATATTCCTTTCACTAACTCTGTTGTCATGGCCT  246
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  AAATCAG-TAAGAGTTAATA-TCCTTTCACTAACTCTGTTGTCATGGCCT  236

seq1  GAAAGGCTTGTGGTGTTCGCCTGCCTGAAACTATTGATGCATAATACATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGTGGTGTTCGCCTGCCTGAAACTATTGATGCATAATACATT  286

seq1  ATATGGAATAATCTTTGTCCTGTCCTTTGAGCCTTGAGTTTCATTATCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAATAATCTTTGTCCTGTCCTTTGAGCCTTGAGTTTCATTATCAC  336

seq1  TGTAGTATTTGATGGTTAAGTTTCTGGCTAACTTAGGAAAGCTGCACACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATTTGATGGTTAAGTTTCTGGCTAACTTAGGAAAGCTGCACACA  386

seq1  CTGGACCTGCTGTAACAAATTT-CCCAGTGCCCAGCAACAAAGGCATGTT  445
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGGACCTGCTGTAACAAATTTCCCCAGTGCCCAGCAACAAAGGCATGTT  436

seq1  GCTACGAATCTAAATTATAATTACTTGTTTAAAAGTATGTCTAGTGAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGAATCTAAATTATAATTACTTGTTTAAAAGTATGTCTAGTGAAAT  486

seq1  GAGCTTTTTTAAAAAATTAGTCAAACTACAATATGTATTTATCTAGCACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTTTAAAAAATTAGTCAAACTACAATATGTATTTATCTAGCACA  536

seq1  AATAAAAAATATGAGATACTCTAAATCACAAGTGTTTGAAATTTTTGTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATATGAGATACTCTAAATCACAAGTGTTTGAAATTTTTGTAT  586

seq1  CATTTTTGTTGTTGTTGTTGTTTTTAAATTTTTGTTGTTGTTGATTTTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTTGTTGTTGTTGTTTTTAAATTTTTGTTGTTGTTGATTTTGT  636

seq1  CTTTGAGACAGAGTCTCAGGCCGCCTGGGATGGCTTTGATTTCACTTTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACAGAGTCTCAGGCCGCCTGGGATGGCTTTGATTTCACTTTAT  686

seq1  ACTGAAGAATGACATTAAACTTTTGTTCTTCCTGCCTTTATTTCCTGGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAATGACATTAAACTTTTGTTCTTCCTGCCTTTATTTCCTGGAT  736

seq1  GATGGGAATTCATTCAGTTTACAATTTCTGGCTATTACAAATAAAGTGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAATTCATTCAGTTTACAATTTCTGGCTATTACAAATAAAGTGGC  786

seq1  TATGGACATAGTGGATACATGTCCTTGGGAGAATGGCGAAACATCTTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATAGTGGATACATGTCCTTGGGAGAATGGCGAAACATCTTATG  836

seq1  CTTCTATGTCCAGGAGTGCCATAGCTGGGTCTTCAGGTAGAATTATTTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTCCAGGAGTGCCATAGCTGGGTCTTCAGGTAGAATTATTTTC  886

seq1  TATTTTCTAAGAAACTGCCATATTGGTTCCCAGAGTGGTTGTATAAGTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAGAAACTGCCATATTGGTTCCCAGAGTGGTTGTATAAGTTT  936

seq1  GCAATCCCACCAGCGATAAAAGAGTGCTTTCTCCATATCTTCACCAGTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCACCAGCGATAAAAGAGTGCTTTCTCCATATCTTCACCAGTAT  986

seq1  TTGTTATCGATTGAGTTTTTGATCTTAGCCATTCTGATTGGTGTGAGGTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCGATTGAGTTTTTGATCTTAGCCATTCTGATTGGTGTGAGGTA  1036

seq1  GAATTTCAGGGTTGCTTTGTTTTGCATTTCCCTGATGACTAAGGACTTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGGGTTGCTTTGTTTTGCATTTCCCTGATGACTAAGGACTTTG  1086

seq1  AACA  1099
      ||||
seq2  AACA  1090