BAC Information

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BAC

Clone NameB6Ng01-083A01
Chromosome18 (Build37)
Map Location 69,472,310 - 69,601,401
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneRnmt, Mc5r, Mc2r, LOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083A01.bB6Ng01-083A01.g
ACCDH897388DH897389
length1,2041,087
definitionDH897388|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A01, 5' end.DH897389|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,600,184 - 69,601,401)(69,472,310 - 69,473,414)
sequence
gaattcagatgtcctaactaccggggttttcctttgggttaaatatgctc
cccccaagaaaacactagggtttttttttttcagttaatattagctctga
aaagcatttttttaattcattcatatgtatgcgtattttcttccacacag
aacctgaaattatttttaaagtgaacaggtctcatgagagactatggcat
gcaccagtgcacaagctaaacctaaaaaaaatcctcaatggaaaagaata
tatatatataaacaaacatattaacaaacagcccagccatggggaagggt
gcagttttgtcagtaaggatcaagtcacacagactattgatctgcccaag
ttttaaaactctcaactttctcttacttctgaatgctcatcagtgcggct
cacgttttcatgtagtcaaagcacctcttatattgttcctttcccaaaaa
actcagtagcagagatccttgtgcattgtagcagagaaaatatcagatgt
agattatgactacacgatccggttatattaaataagaacgcccgctcact
gaacgggcatgccgctataacatccatctggctcgtccagtctcttcttt
cttcttatcagacctgtagtggctttgacttgtagtgatctgcctggtgt
ttccttctgcattagcatcctgcagctcttggtgggtcagcaacagggaa
tctcaatttcagttccatagcccacctcaaactcactttcttctgatgct
ctccaccgggccaaggactgagtttctcagtcatacatacctggccacac
taggaccctaacagaggccccgtactccaagggaagagattatttctaat
ccgctccaaatattttcttgtttaaatgtgagacacaaaactaagtaaac
gtttccttcctggaatgataccacacagagggaggagcctagagagctag
gagcggggtacctatgcatttcttacacagaggccaaactgtgtcaggat
tttatttgctgaaagcatcttaacataactagagttcccctttctgcatc
tagaacaagcctggtcacttaatgctcacaaaaaatttttaaacaatact
tgcctggatgatctagactttgcgaaatggctagtgtcttgaagccactg
aactggatcagtggaatcatttggcatggatcttttgtccaactggaact
tgct
gaattctccttttgcctaattagttttaattctgagagctgaggaaggac
tgaacacatagctttttgtcggctcgctgccctctagaatattctgttct
agacgtaggcatatggagcccaagccaagagtgtgcccaggcatttccat
catcatgctggatacagtaggcgctccctctgctgctacctttcccccga
atgtcctctgcctgctacttgcaccacttgatctgagtggtaatcttttc
catttcagaatgacaacgtcttgaaaatgcacagacccagcagggaggaa
catgatgtaagcttttaaacttaaattttcttagagttgggagatgattt
ctttttcctttttgcagagcaaattttaataaagacggatactgggtgac
aaaaccattgagctgaaaccttgctactgcacagtttgtacacacacact
tttctcagcagttccccggactcgggtagggaagggcttgcataaggaat
ggcatagcacccttcagggacaataaatccacccacagggctcttgatcc
ttcaatgtgttccatagtttttaagaagcaacttgagcgtaactaaaggt
tgtacttcgatgtttgaagtgacgtcgaacagaaccagcagatcactttc
tttctagtgtgaccaaagttcttgccattagtcttttgacttacttatat
ggccactgaacaacatgtgacacagttgttcaattgatttttcaggctgc
aatgggctggctctatctatatgtccccatgctagacccgatttttaata
attttggtaaagctgtagttacacagaaaaaaatcagtcagaaatgataa
gataataacaaatcaaaagaaaacaaaattaccatctttcagtagatatt
agagaaaatctgcaacaaagccagataaattttaatataataatttagcc
atataaattccaaatttaattttattttgctctattcaaatagaatgttc
tactcaatatatgtaattctctttccctgcacgaactcttcatatacacc
tccctctgtactcaacgtacgcttttctcagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69600184_69601401
seq2: B6Ng01-083A01.b_44_1247 (reverse)

seq1  AGCAATGTTCCAGTGTGAGGCAGAGAGATCCCATGCCAAAATGACTCCAA  50
      ||||| ||||||||  ||  || | |||| ||||||| |||||| ||| |
seq2  AGCAA-GTTCCAGTTGGA--CA-AAAGAT-CCATGCC-AAATGATTCC-A  43

seq1  CTGAATACAAGTCAGTGGCCTCAAGACACTAGCCCATCTGCCAAAGTCTA  100
      ||| || ||  |||||||| |||||||||||| |||| |  |||||||||
seq2  CTG-ATCCAGTTCAGTGGCTTCAAGACACTAG-CCATTTCGCAAAGTCTA  91

seq1  GATTCATCCAGGCAGTTATTG-TTAAAAAATATTTGTGAGCATTAAGTTG  149
      || |||||||||||  ||||| ||||||| | ||||||||||||||| ||
seq2  GA-TCATCCAGGCAAGTATTGTTTAAAAATTTTTTGTGAGCATTAAG-TG  139

seq1  ACAAGCCTGGTTCTAGATGGCAGAAAGGGGGAAACTCTAGTTTATGTTAA  199
      || || || ||||||||| |||||||||||  |||||||| |||||||||
seq2  ACCAGGCTTGTTCTAGAT-GCAGAAAGGGG--AACTCTAG-TTATGTTAA  185

seq1  GATGCTTTCAGCAAATAAAATCCTGACACAGTTTGGCCTCTGTGTAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTCAGCAAATAAAATCCTGACACAGTTTGGCCTCTGTGTAAGAA  235

seq1  ATGCATAGGTACCCCGCTCCTAGCTCTCTAGGCTCCTCCCTCTGTGTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGGTACCCCGCTCCTAGCTCTCTAGGCTCCTCCCTCTGTGTGGT  285

seq1  ATCATTCCAGGAAGGAAACGTTTACTTAGTTTTGTGTCTCACATTTAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCAGGAAGGAAACGTTTACTTAGTTTTGTGTCTCACATTTAAAC  335

seq1  AAGAAAATATTTGGAGCGGATTAGAAATAATCTCTTCCCTTGGAGTACGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATTTGGAGCGGATTAGAAATAATCTCTTCCCTTGGAGTACGG  385

seq1  GGCCTCTGTTAGGGTCCTAGTGTGGCCAGGTATGTATGACTGAGAAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGTTAGGGTCCTAGTGTGGCCAGGTATGTATGACTGAGAAACTC  435

seq1  AGTCCTTGGCCCGGTGGAGAGCATCAGAAGAAAGTGAGTTTGAGGTGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGGCCCGGTGGAGAGCATCAGAAGAAAGTGAGTTTGAGGTGGGC  485

seq1  TATGGAACTGAAATTGAGATTCCCTGTTGCTGACCCACCAAGAGCTGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAACTGAAATTGAGATTCCCTGTTGCTGACCCACCAAGAGCTGCAG  535

seq1  GATGCTAATGCAGAAGGAAACACCAGGCAGATCACTACAAGTCAAAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAATGCAGAAGGAAACACCAGGCAGATCACTACAAGTCAAAGCCA  585

seq1  CTACAGGTCTGATAAGAAGAAAGAAGAGACTGGACGAGCCAGATGGATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTCTGATAAGAAGAAAGAAGAGACTGGACGAGCCAGATGGATGT  635

seq1  TATAGCGGCATGCCCGTTCAGTGAGCGGGCGTTCTTATTTAATATAACCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCGGCATGCCCGTTCAGTGAGCGGGCGTTCTTATTTAATATAACCG  685

seq1  GATCGTGTAGTCATAATCTACATCTGATATTTTCTCTGCTACAATGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTGTAGTCATAATCTACATCTGATATTTTCTCTGCTACAATGCACA  735

seq1  AGGATCTCTGCTACTGAGTTTTTTGGGAAAGGAACAATATAAGAGGTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCTGCTACTGAGTTTTTTGGGAAAGGAACAATATAAGAGGTGCT  785

seq1  TTGACTACATGAAAACGTGAGCCGCACTGATGAGCATTCAGAAGTAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTACATGAAAACGTGAGCCGCACTGATGAGCATTCAGAAGTAAGAG  835

seq1  AAAGTTGAGAGTTTTAAAACTTGGGCAGATCAATAGTCTGTGTGACTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAGAGTTTTAAAACTTGGGCAGATCAATAGTCTGTGTGACTTGA  885

seq1  TCCTTACTGACAAAACTGCACCCTTCCCCATGGCTGGGCTGTTTGTTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTGACAAAACTGCACCCTTCCCCATGGCTGGGCTGTTTGTTAAT  935

seq1  ATGTTTGTTTATATATATATATTCTTTTCCATTGAGGATTTTTTTTAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTTATATATATATATTCTTTTCCATTGAGGATTTTTTTTAGGT  985

seq1  TTAGCTTGTGCACTGGTGCATGCCATAGTCTCTCATGAGACCTGTTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGTGCACTGGTGCATGCCATAGTCTCTCATGAGACCTGTTCACT  1035

seq1  TTAAAAATAATTTCAGGTTCTGTGTGGAAGAAAATACGCATACATATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAATTTCAGGTTCTGTGTGGAAGAAAATACGCATACATATGAA  1085

seq1  TGAATTAAAAAAATGCTTTTCAGAGCTAATATTAACTGAAAAAAAAAAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAAAAATGCTTTTCAGAGCTAATATTAACTGAAAAAAAAAAAC  1135

seq1  CCTAGTGTTTTCTTGGGGGGAGCATATTTAACCCAAAGGAAAACCCCGGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTTTTCTTGGGGGGAGCATATTTAACCCAAAGGAAAACCCCGGT  1185

seq1  AGTTAGGACATCTGAATTC  1218
      |||||||||||||||||||
seq2  AGTTAGGACATCTGAATTC  1204

seq1: chr18_69472310_69473414
seq2: B6Ng01-083A01.g_67_1153

seq1  GAATTCTCCTTTTGCCTAATTAGTTTTAATTCTGAGAGCTGAGGAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTGCCTAATTAGTTTTAATTCTGAGAGCTGAGGAAGGAC  50

seq1  TGAACACATAGCTTTTTGTCGGCTCGCTGCCCTCTAGAATATTCTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATAGCTTTTTGTCGGCTCGCTGCCCTCTAGAATATTCTGTTCT  100

seq1  AGACGTAGGCATATGGAGCCCAAGCCAAGAGTGTGCCCAGGCATTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTAGGCATATGGAGCCCAAGCCAAGAGTGTGCCCAGGCATTTCCAT  150

seq1  CATCATGCTGGATACAGTAGGCGCTCCCTCTGCTGCTACCTTTCCCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCTGGATACAGTAGGCGCTCCCTCTGCTGCTACCTTTCCCCCGA  200

seq1  ATGTCCTCTGCCTGCTACTTGCACCACTTGATCTGAGTGGTAATCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTGCCTGCTACTTGCACCACTTGATCTGAGTGGTAATCTTTTC  250

seq1  CATTTCAGAATGACAACGTCTTGAAAATGCACAGACCCAGCAGGGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAATGACAACGTCTTGAAAATGCACAGACCCAGCAGGGAGGAA  300

seq1  CATGATGTAAGCTTTTAAACTTAAATTTTCTTAGAGTTGGGAGATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTAAGCTTTTAAACTTAAATTTTCTTAGAGTTGGGAGATGATTT  350

seq1  CTTTTTCCTTTTTGCAGAGCAAATTTTAATAAAGACGGATACTGGGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTTTTGCAGAGCAAATTTTAATAAAGACGGATACTGGGTGAC  400

seq1  AAAACCATTGAGCTGAAACCTTGCTACTGCACAGTTTGTACACACACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGAGCTGAAACCTTGCTACTGCACAGTTTGTACACACACACT  450

seq1  TTTCTCAGCAGTTCCCCGGACTCGGGTAGGGAAGGGCTTGCATAAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCAGTTCCCCGGACTCGGGTAGGGAAGGGCTTGCATAAGGAAT  500

seq1  GGCATAGCACCCTTCAGGGACAATAAATCCACCCACAGGGCTCTTGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCACCCTTCAGGGACAATAAATCCACCCACAGGGCTCTTGATCC  550

seq1  TTCAATGTGTTCCATAGTTTTTAAGAAGCAACTTGAGCGTAACTAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTGTTCCATAGTTTTTAAGAAGCAACTTGAGCGTAACTAAAGGT  600

seq1  TGTACTTCGATGTTTGAAGTGACGTCGAACAGAACCAGCAGATCACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCGATGTTTGAAGTGACGTCGAACAGAACCAGCAGATCACTTTC  650

seq1  TTTCTAGTGTGACCAAAGTTCTTGCCATTAGTCTTTTGACTTACTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGTGACCAAAGTTCTTGCCATTAGTCTTTTGACTTACTTATAT  700

seq1  GGCCACTGAACAACATGTGACACAGTTGTTCAATTGATTTTTCAGGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGAACAACATGTGACACAGTTGTTCAATTGATTTTTCAGGCTGC  750

seq1  AATGGGCTGGCTCTATCTATATGTCCCCATGCTAGACCCGATTTTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTGGCTCTATCTATATGTCCCCATGCTAGACCCGATTTTTAATA  800

seq1  ATTTTGGTAAAGCTGTAGTTACACAGAAAAAAAATCAGTCAGAAATGATA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTTGGTAAAGCTGTAGTTACACAG-AAAAAAATCAGTCAGAAATGATA  849

seq1  AGATAATAACAAATCAAAAGAAAACAAAATTACCATCTTTCAGTAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATAATAACAAATCAAAAGAAAACAAAATTACCATCTTTCAGTAGA-TA  898

seq1  TTAGAGAATAATCTGCAACAAAGCCAGAATAAATTTTAATATAAATAATT  950
      |||||||| |||||||||||||||||| |||||||||||||| |||||||
seq2  TTAGAGAA-AATCTGCAACAAAGCCAG-ATAAATTTTAATAT-AATAATT  945

seq1  TAGCCATATAAAATTCCAAATTTTAATTTTAATTTTTGCTCTTATTTCAA  1000
      ||||||||| |||||||||| ||||||||||  |||||||||   |||||
seq2  TAGCCATAT-AAATTCCAAA-TTTAATTTTA--TTTTGCTCT--ATTCAA  989

seq1  ATAGATGGTTTCTACTCAATATATGTTATATCTCTTTCCCCTGCACGAAC  1050
      |||||  | ||||||||||||||||| || ||||||| ||||||||||||
seq2  ATAGAATG-TTCTACTCAATATATGTAAT-TCTCTTT-CCCTGCACGAAC  1036

seq1  TCCTCCCATATACACCCCCCTCTGTACTCAACGTTACGCTCTTTCTCAGG  1100
      || |  |||||||||| |||||||||||||||| |||||| |||||||| 
seq2  TCTT--CATATACACCTCCCTCTGTACTCAACG-TACGCT-TTTCTCAGA  1082

seq1  AAAAA  1105
      |||||
seq2  AAAAA  1087