BAC Information

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BAC

Clone NameB6Ng01-084E18
Chromosome18 (Build37)
Map Location 30,680,422 - 30,792,973
singlet/doubletdoublet
Overlap geneLOC433168
Upstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E18.bB6Ng01-084E18.g
ACCDH898295DH898296
length1,0031,108
definitionDH898295|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E18, 5' end.DH898296|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,680,422 - 30,681,431)(30,791,847 - 30,792,973)
sequence
gaattccaaacccagtacaatttagttatctcatttcaattagtagtgaa
gaaatgcatgcaagcaataggggtcctcattaaatggtcagtgatgtaga
atttgcaatataataatcaatgtggaaggatgtaaattataatctttctg
aaatttccattgtaaaatacatacatgtttctacacatagatatatcagg
agagacttttctctccttttaaaatatagttaagttcctatattaataca
ttgatggcaagtaaatgttttcattatcttaatgagtaaaatttatttag
tgcccatcttttatggcatgtcatgcctgaactccttaactgaatattgt
gcgtctagttacatatttatgaacttcataagagattatggatcaaatct
tggaacctgtggtttacagtctcttttatattttcacaagtttctggttg
aaagttttctactttgtctactcttcaacttactactaccctgactaaag
atagaggagaaaataaaatcgtcagttatttttctcactattagttgtac
taactgaatttatataagaatatacacaccacctgttttagccattcaaa
ataattactgttgtgtatgtataagtgtcacatttatttttctatagcag
aggacattagtgaactagcctgttcattctctccagagttttctacaaga
atcagagttatctgctactcactgagatgcattagcaacattctttacta
gcaacagtcaccacattctaataatggctgattgtcctccgcagtggatg
atgttatgctagcatattcacagtcagtctcaaggcccctgcctttaatg
caaaccatccagtgtgattcaattatattcctcaattaaaatatgctgag
atgatctggaagtaatcacgtgctctaggaattgtgtgtgagtgtgtgtg
tgtatgtgtgtgtgtgtgtcgcacgattgcatgctgtacgtgtgtgggtg
agg
gaattccctcaaaggccaaggtgtaacacctgggtcacactcaaatcaaa
acctcggggcaggtgatgacagagcactctgcatctgtaactgaacatga
gtcaatataacctggcttcacggccaaaaatgatagatctaacaggagct
ggtaagctgggcagtccatgaaggtgatcagctatctcattcttctgcta
ttgggaagacatgaccacaaaatcttagtctagccctggttcctaattgt
ccccaaattcaccatgccatattgcttcacagtccttttgcttcctgtga
tggctacagactccttccatttctttagcataaaccttgcctgtagctgc
gaccagttctgacacttggccatctgttgaggtcaggttctccccagagc
agcctcagagcaaagggtttacataagtgatttatgtagaagtgtcctaa
ggagaaaacagtgaaggagtggggaatcaaaatgagacaggaaaagaagc
taagcctgcatgggctgcattggccttggccagctctcagggacagctct
ggactataaattacaccctgaccttttcctgcctttctatgaaagagctt
ggcttcggttctccccagcagctagccactggctatgattagatttgaag
gctacagtagaaaaatgaatgtcaaagcttttcagcatctagaaatgatg
cttcagaggctgtggaccaccgttttaggcaaccgaactgccctctctag
tagtcaaaagtcccactctctctaaatatttattcattaaaatcattgag
ttgtttgtgcaaaaccgagcaattctgtggtgcataaaacagcttcacta
agaaaaggaagatgattggcaacagaaagctgagttgcttgttggagatt
gtgaccagattgagaaaagagagagaaatgaatgttatcttaagtgaaca
cagactcaagcgacaggttttaaatgtcattttttctgtcagtttaaact
aagcatagaaagaaagcttttatatgcagagagagatttatcagcgaatt
ctaaatgatggctactactggaaacctgatgtgtgggggtgacgtgtggt
tagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30680422_30681431
seq2: B6Ng01-084E18.b_49_1051

seq1  GAATTCCAAACCCAGTACAATTTAGTTATCTCATTTCAATTAGTAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCCAGTACAATTTAGTTATCTCATTTCAATTAGTAGTGAA  50

seq1  GAAATGCATGCAAGCAATAGGGGTCCTCATTAAATGGTCAGTGATGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATGCAAGCAATAGGGGTCCTCATTAAATGGTCAGTGATGTAGA  100

seq1  ATTTGCAATATAATAATCAATGTGGAAGGATGTAAATTATAATCTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATATAATAATCAATGTGGAAGGATGTAAATTATAATCTTTCTG  150

seq1  AAATTTCCATTGTAAAATACATACATGTTTCTACACATAGATATATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCATTGTAAAATACATACATGTTTCTACACATAGATATATCAGG  200

seq1  AGAGACTTTTCTCTCCTTTTAAAATATAGTTAAGTTCCTATATTAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTTTCTCTCCTTTTAAAATATAGTTAAGTTCCTATATTAATACA  250

seq1  TTGATGGCAAGTAAATGTTTTCATTATCTTAATGAGTAAAATTTATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCAAGTAAATGTTTTCATTATCTTAATGAGTAAAATTTATTTAG  300

seq1  TGCCCATCTTTTATGGCATGTCATGCCTGAACTCCTTAACTGAATATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCTTTTATGGCATGTCATGCCTGAACTCCTTAACTGAATATTGT  350

seq1  GCGTCTAGTTACATATTTATGAACTTCATAAGAGATTATGGATCAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTAGTTACATATTTATGAACTTCATAAGAGATTATGGATCAAATCT  400

seq1  TGGAACCTGTGGTTTACAGTCTCTTTTATATTTTCACAAGTTTCTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTGTGGTTTACAGTCTCTTTTATATTTTCACAAGTTTCTGGTTG  450

seq1  AAAGTTTTCTACTTTGTCTACTCTTCAACTTACTACTACCCTGACTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTACTTTGTCTACTCTTCAACTTACTACTACCCTGACTAAAG  500

seq1  ATAGAGGAGAAAATAAAATCGTCAGTTATTTTTCTCACTATTAGTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAGAAAATAAAATCGTCAGTTATTTTTCTCACTATTAGTTGTAC  550

seq1  TAACTGAATTTATATAAGAATATACACACCACCTGTTTTAGCCATTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAATTTATATAAGAATATACACACCACCTGTTTTAGCCATTCAAA  600

seq1  ATAATTACTGTTGTGTATGTATAAGTGTCACATTTATTTTTCTATAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACTGTTGTGTATGTATAAGTGTCACATTTATTTTTCTATAGCAG  650

seq1  AGGACATTAGTGAACTAGCCTGTTCATTCTCTCCAGAGTTTTCTACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTAGTGAACTAGCCTGTTCATTCTCTCCAGAGTTTTCTACAAGA  700

seq1  ATCAGAGTTATCTGCTACTCACTGAGATGCATTAGCAACATTCTTTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTTATCTGCTACTCACTGAGATGCATTAGCAACATTCTTTACTA  750

seq1  GCAACAGTCACCACATTCTAATAATGGCTGATTGTCCTCCGCAGTGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTCACCACATTCTAATAATGGCTGATTGTCCTCCGCAGTGGATG  800

seq1  ATGTTATGCTAGCATATTCACAGTCAGTCTCAAGGCCCCTGCCTTTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGCTAGCATATTCACAGTCAGTCTCAAGGCCCCTGCCTTTAATG  850

seq1  CAAACCATCCAGTGTGATTCAATTATATTCCTCAATTAAAAATATGCTGA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAACCATCCAGTGTGATTCAATTATATTCCTCAATT-AAAATATGCTGA  899

seq1  GATGATCTGGAAGTAATCACGTGCTCTAGGAAATTGTGTGGTGAGTGTGT  950
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GATGATCTGGAAGTAATCACGTGCTCTAGG-AATTGTGT-GTGAGTGTGT  947

seq1  GTGTGTATGTGTGTGTGTGTGTGCGCACGAGTGCATGCGTGTAAGGGTGT  1000
      |||||||||||||||||||||| ||||||| ||||||| ||||   ||||
seq2  GTGTGTATGTGTGTGTGTGTGT-CGCACGATTGCATGC-TGTA--CGTGT  993

seq1  GTGGGTGAGG  1010
      ||||||||||
seq2  GTGGGTGAGG  1003

seq1: chr18_30791847_30792973
seq2: B6Ng01-084E18.g_68_1175 (reverse)

seq1  ACACACTTA-CACACTGTCACCCCCACACATCAGTGTCTCAGTAAGTAGC  49
      ||||||| | ||||| ||||||||||||||||||  |  |||| ||||||
seq2  ACACACTAACCACAC-GTCACCCCCACACATCAGGTTTCCAGT-AGTAGC  48

seq1  CATCATTTTAGAATATCGCTTGAATAAATCTTCCTTCTTCCTGCATTATA  99
      ||||| |||||||| |||||   |||||||     |||  ||||| ||||
seq2  CATCA-TTTAGAAT-TCGCT--GATAAATC-----TCTCTCTGCA-TATA  88

seq1  CAAGCTTTCTTTTCTATTGCTTAGTTTAAACTGACAGAAAAAATGACATT  149
       |||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  AAAGCTTTC-TTTCTA-TGCTTAGTTTAAACTGACAGAAAAAATGACATT  136

seq1  TAAAAAGCCTGTCGCTTGAGTCTTGTCTTCACCTTAAGATAACATTCATT  199
      |||||  ||||||||||||||| ||| |||| ||||||||||||||||||
seq2  TAAAA--CCTGTCGCTTGAGTC-TGTGTTCA-CTTAAGATAACATTCATT  182

seq1  TCTCTCTCTTTTCTCAATTCTGGTCACAATCTCCAACAAGCAACTCAGCT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTTCTCAA-TCTGGTCACAATCTCCAACAAGCAACTCAGCT  231

seq1  TTCTGTTGCCAATTCATCTTCCTTTTCTTAGTGAAGCTGTTTTATGCACC  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGCCAA-TCATCTTCCTTTTCTTAGTGAAGCTGTTTTATGCACC  280

seq1  ACAGATTTGCTCGGTTTTGCACAAACAACTCAATGATTTTAATGAATAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGCTCGGTTTTGCACAAACAACTCAATGATTTTAATGAATAAA  330

seq1  TATTTAGAGAGAGTGGGACTTTTGACTACTAGAGAGGGCAGTTCGGTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAGAGAGTGGGACTTTTGACTACTAGAGAGGGCAGTTCGGTTGC  380

seq1  CTAAAACGGTGGTCCACAGCCTCTGAAGCATCATTTCTAGATGCTGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACGGTGGTCCACAGCCTCTGAAGCATCATTTCTAGATGCTGAAAA  430

seq1  GCTTTGACATTCATTTTTCTACTGTAGCCTTCAAATCTAATCATAGCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACATTCATTTTTCTACTGTAGCCTTCAAATCTAATCATAGCCAG  480

seq1  TGGCTAGCTGCTGGGGAGAACCGAAGCCAAGCTCTTTCATAGAAAGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTGCTGGGGAGAACCGAAGCCAAGCTCTTTCATAGAAAGGCAG  530

seq1  GAAAAGGTCAGGGTGTAATTTATAGTCCAGAGCTGTCCCTGAGAGCTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTCAGGGTGTAATTTATAGTCCAGAGCTGTCCCTGAGAGCTGGC  580

seq1  CAAGGCCAATGCAGCCCATGCAGGCTTAGCTTCTTTTCCTGTCTCATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAATGCAGCCCATGCAGGCTTAGCTTCTTTTCCTGTCTCATTTT  630

seq1  GATTCCCCACTCCTTCACTGTTTTCTCCTTAGGACACTTCTACATAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCCACTCCTTCACTGTTTTCTCCTTAGGACACTTCTACATAAATC  680

seq1  ACTTATGTAAACCCTTTGCTCTGAGGCTGCTCTGGGGAGAACCTGACCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTAAACCCTTTGCTCTGAGGCTGCTCTGGGGAGAACCTGACCTC  730

seq1  AACAGATGGCCAAGTGTCAGAACTGGTCGCAGCTACAGGCAAGGTTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGGCCAAGTGTCAGAACTGGTCGCAGCTACAGGCAAGGTTTATG  780

seq1  CTAAAGAAATGGAAGGAGTCTGTAGCCATCACAGGAAGCAAAAGGACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAATGGAAGGAGTCTGTAGCCATCACAGGAAGCAAAAGGACTGT  830

seq1  GAAGCAATATGGCATGGTGAATTTGGGGACAATTAGGAACCAGGGCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATATGGCATGGTGAATTTGGGGACAATTAGGAACCAGGGCTAGA  880

seq1  CTAAGATTTTGTGGTCATGTCTTCCCAATAGCAGAAGAATGAGATAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTTTGTGGTCATGTCTTCCCAATAGCAGAAGAATGAGATAGCTG  930

seq1  ATCACCTTCATGGACTGCCCAGCTTACCAGCTCCTGTTAGATCTATCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTCATGGACTGCCCAGCTTACCAGCTCCTGTTAGATCTATCATT  980

seq1  TTTGGCCGTGAAGCCAGGTTATATTGACTCATGTTCAGTTACAGATGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCGTGAAGCCAGGTTATATTGACTCATGTTCAGTTACAGATGCAG  1030

seq1  AGTGCTCTGTCATCACCTGCCCCGAGGTTTTGATTTGAGTGTGACCCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTGTCATCACCTGCCCCGAGGTTTTGATTTGAGTGTGACCCAGG  1080

seq1  TGTTACACCTTGGCCTTTGAGGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  TGTTACACCTTGGCCTTTGAGGGAATTC  1108