BAC Information

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BAC

Clone NameB6Ng01-084K22
Chromosome18 (Build37)
Map Location 70,766,163 - 70,767,358
singlet/doubletsinglet
Overlap geneMbd2
Upstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli
Downstream geneEG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084K22.bB6Ng01-084K22.g
ACCDH898568DH898569
length1,1541,192
definitionDH898568|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K22, 5' end.DH898569|Mus musculus domesticus DNA, BAC clone: B6Ng01-084K22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtatgaaggacacatgctccactat
gttcatagcagccttatttataatagccaggagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaaaactgaagtgtcgacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaagacccaagagctaaagggatctgcaccctatagt
ggacacatatgactaacagtacccgatcttctgactctagctgcatttgt
aacaaagatgctatcgcatcactgaagaagagcccattggaacgtaactt
tgatgccagtacaggacgccaggcaaaagggggatgtgggtgtggtaagg
gaat
gaattcaagtgagcggctacctttaagggaaggagcccaaggagtggaag
tgagatgaggtgacctgggcagtgggcgagcagcaggaggaggtagagca
gaccagggccagggtgtgtggcgggctcagcacaggagcaggacagctga
ggcagaggaggatactgcaggcttagtgccaggcacctctctagtggcct
gggaccaaggcttgcgggctcactgacttaggtgctaatatctagctcat
gatgttgaaaataagcagaaagaaatagtttcaagatagtttttaaagac
ctttgcttagtttccttcctaaactttagcatgtttctgagtattgagtt
agtttttattccaatggagataaaaagggggaaatgcattttaagatgat
ctatgagggtcaagatcagttccactcttttgcacggctagatttgaagg
gatacttttctgtgtgattgttgtacacccaggacttatggacatttgtg
tggccaagagcagcgtgtgtgttgtgttttgttactatgtctgtacttga
acaccagaagtcactctgataggagcctggcctttccatgatatgacagc
tatctgtgtcatatctctgcagtagcgtgctctgtggtactgcagggttg
agagctcctcctaaaatctgtgtgtctgtctacatttctgatggatggcc
atggctttaaatgtttcagacattttgaactctacatcttccaagataag
taatcatagaatggttctagaacatcacttaatccagtgtgtttgaatta
ttaataattaataattgctctttatagccatgattttagtcagagattga
ctgaatttcagcttttaaaatattttattacatgttttttacaattatat
tttatcatgtcttccttcttcaaacttctcttaggtcctcaccccatctc
taccaacccaacttcatgttctctcagaaaaacaaaaccaaattaaaaaa
aaactactccacaaacaacaggaacacattaaataaattttaaccaatgg
agcaaggatcagaaagaaggaaaaaaactacaacctaacctgccaaggtc
aagccaaaatggaaagaagccccacagacatccctccgctctggtttcgt
tcacgcacacttaacgcttctgacttgcttagttttctggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70766163_70767358
seq2: B6Ng01-084K22.g_69_1260

seq1  GAATTCAAGTGAGCGGCTACCTTTAAGGGAAGGAGCCCAAGGAGTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAGCGGCTACCTTTAAGGGAAGGAGCCCAAGGAGTGGAAG  50

seq1  TGAGATGAGGTGACCTGGGCAGTGGGCGAGCAGCAGGAGGAGGTAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGGTGACCTGGGCAGTGGGCGAGCAGCAGGAGGAGGTAGAGCA  100

seq1  GACCAGGGCCAGGGTGTGTGGCGGGCTCAGCACAGGAGCAGGACAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGCCAGGGTGTGTGGCGGGCTCAGCACAGGAGCAGGACAGCTGA  150

seq1  GGCAGAGGAGGATACTGCAGGCTTAGTGCCAGGCACCTCTCTAGTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGAGGATACTGCAGGCTTAGTGCCAGGCACCTCTCTAGTGGCCT  200

seq1  GGGACCAAGGCTTGCGGGCTCACTGACTTAGGTGCTAATATCTAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGGCTTGCGGGCTCACTGACTTAGGTGCTAATATCTAGCTCAT  250

seq1  GATGTTGAAAATAAGCAGAAAGAAATAGTTTCAAGATAGTTTTTAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGAAAATAAGCAGAAAGAAATAGTTTCAAGATAGTTTTTAAAGAC  300

seq1  CTTTGCTTAGTTTCCTTCCTAAACTTTAGCATGTTTCTGAGTATTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTAGTTTCCTTCCTAAACTTTAGCATGTTTCTGAGTATTGAGTT  350

seq1  AGTTTTTATTCCAATGGAGATAAAAAGGGGGAAATGCATTTTAAGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTCCAATGGAGATAAAAAGGGGGAAATGCATTTTAAGATGAT  400

seq1  CTATGAGGGTCAAGATCAGTTCCACTCTTTTGCACGGCTAGATTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGGTCAAGATCAGTTCCACTCTTTTGCACGGCTAGATTTGAAGG  450

seq1  GATACTTTTCTGTGTGATTGTTGTACACCCAGGACTTATGGACATTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTTCTGTGTGATTGTTGTACACCCAGGACTTATGGACATTTGTG  500

seq1  TGGCCAAGAGCAGCGTGTGTGTTGTGTTTTGTTACTATGTCTGTACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGAGCAGCGTGTGTGTTGTGTTTTGTTACTATGTCTGTACTTGA  550

seq1  ACACCAGAAGTCACTCTGATAGGAGCCTGGCCTTTCCATGATATGACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGTCACTCTGATAGGAGCCTGGCCTTTCCATGATATGACAGC  600

seq1  TATCTGTGTCATATCTCTGCAGTAGCGTGCTCTGTGGTACTGCAGGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTCATATCTCTGCAGTAGCGTGCTCTGTGGTACTGCAGGGTTG  650

seq1  AGAGCTCCTCCTAAAATCTGTGTGTCTGTCTACA-TTCTGATGGATGGCC  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGCTCCTCCTAAAATCTGTGTGTCTGTCTACATTTCTGATGGATGGCC  700

seq1  ATGGCTTTAAATGTTTCAGACATTTTGAACTCTACATCTTCCAAGATAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTAAATGTTTCAGACATTTTGAACTCTACATCTTCCAAGATAAG  750

seq1  TAATCATAGAATGGTTCTAGAACATCACTTAATCCAGTGTGTTTGAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAGAATGGTTCTAGAACATCACTTAATCCAGTGTGTTTGAATTA  800

seq1  TTAATAATTAATAATTGCTCTTTATAGCCATGATTTTAGTCAGAGATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATTAATAATTGCTCTTTATAGCCATGATTTTAGTCAGAGATTGA  850

seq1  CTGAATTTCAGCTTTTAAAAATATTTTATTACATGTTTTATACAA-TATA  898
      |||||||||||||||| |||||||||||||||||||||| ||||| ||||
seq2  CTGAATTTCAGCTTTT-AAAATATTTTATTACATGTTTTTTACAATTATA  899

seq1  TTTTATCATGTCTTCCCTCTTCAAACTTCTCTTAGGTCCTCACCCCATCT  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTATCATGTCTTCCTTCTTCAAACTTCTCTTAGGTCCTCACCCCATCT  949

seq1  CTACCAACCCAACTTCATGTTCTCTCAGAAAAAACAAAACCAAATAAAAA  998
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CTACCAACCCAACTTCATGTTCTCTCAG-AAAAACAAAACCAAATTAAAA  998

seq1  AAAAACAAC-CCACAAAACAACAGGAAACACATAAAATAAAATCTAAACA  1047
      |||||| || |||| |||||||||| ||||||| ||||||| | ||| ||
seq2  AAAAACTACTCCAC-AAACAACAGG-AACACATTAAATAAATTTTAACCA  1046

seq1  AATGAGCAAAAGACCAGAAAGAAAGAAAAAAACAAACAAACCAAACCCTG  1097
      |  |||| || || ||||||||| ||||||||| |   |||| || ||||
seq2  ATGGAGC-AAGGATCAGAAAGAAGGAAAAAAACTA--CAACCTAA-CCTG  1092

seq1  CCAAAGTCAAG-CAAAAT-GAAAGAAG-CCCACAGACATCCTCTCAGCTC  1144
      |||| |||||| |||||| |||||||| ||||||||||||| ||| ||||
seq2  CCAAGGTCAAGCCAAAATGGAAAGAAGCCCCACAGACATCC-CTCCGCTC  1141

seq1  TG--TTCTGTCACGCACACTGACCGCTCCCTGACCTTTGCCTAGTTTTCT  1192
      ||  |||  ||||||||||| | ||||  |||||  |||| |||||||||
seq2  TGGTTTCGTTCACGCACACTTAACGCT-TCTGAC--TTGCTTAGTTTTCT  1188

seq1  GGCA  1196
      ||||
seq2  GGCA  1192