BAC Information

Click to search

BAC

Clone NameB6Ng01-085G07
Chromosome18 (Build37)17 (Build37)
Map Location 49,983,430 - 49,984,43921,140,339 - 21,140,708
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDtwd2
Downstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085G07.bB6Ng01-085G07.g
ACCDH899078DH899079
length1,004770
definitionDH899078|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G07, 5' end.DH899079|Mus musculus domesticus DNA, BAC clone: B6Ng01-085G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,983,430 - 49,984,439)(21,140,339 - 21,140,708)
sequence
gaattctctcaattccatactttatttttaaaaatatgaccagcaggagt
tggagtttattgttgttatgttacatgtaaagtgtctatagaaatggcat
tctttctttcctagaattcctgaatcctttctcagggctgattcacatgc
tagttatttccaaaggtgcagaaaacagaaactcttacgtaaagagaact
gaattcagaccagcatgcatttgggtaggatggccatgaagtaagcttgg
accaacaggtcaggtgaggtggtcatgacttatttctacttctttatcct
ctcaaaattggagttcagttcaactttctgaactatccagttgtcatctg
tgtctaggaagctttcaaagctgaaaaataaaaatcccctgctaggtgga
ggtgaattctgatgggcaaagctggggtttcagctctgaactaattacca
tgaagagggaacctggaacaaggcaggatagactattagtcagagactgt
gctctgttgttagacagcctcagtgaacttgtgtgatcctaggaaatcac
tcctatttgctgtttgattttcattatctgtagcctgggggttatagtgt
ggggactacagttcatgttcaaactcggaatgatcccagaacaagtgtgc
tggctactttcatgtaaaattgacacaacctagagtcatctgagatgaga
gaacctcaactaagacaatgcctccataagattgtactgtaggcaggcaa
acctgtatggcattttttataacaatgatcagtgtaggaaggtacattgt
aggtgacaccatccctgagctggtgtgttgcaggataattggtgacactg
tgaaccccaatattgtgtttttagctggcaaacctggtttggtttgtttg
tttgtttgttttgtagcacacaccaagagctattctacttgaatatgtac
ctaggattaaataaaatcagcacaggtcaagagcaaacaagcaaacattg
acat
gaattcctaggccaaagaaggctgtctgtgaggatagcaaattgggcagg
agcttcagagatacatgttttgtgagtatcactcatttgaggtccacttt
tcagtgatgtagttgctttggagtcacatatgcgcatgcaaataacctca
ataaactcagttatgccaatgcagacttgagtggacctatttttctggtc
tgtcatggtatcctttctgaggcgaaaacaggtttattcagttacataaa
caccatctgtgttctcttttcccatttaagatgtttgcctctcctctcat
agtccccattctttcatgacctacacacacacacacacacacacacacac
acacacacacacacacagaggttcatataaagaaatatttgcctgagtca
cgcttattttgcttaaaataatgatttctacttccacccactttcttgca
agtgtcataatttcattttcccttaaggatgaatactatttcattgtgta
catgtacagcattaactatagacaaacctaggctggctctatttcctacc
tattgtgaatagtgcggaaataaacaaggatgtgttaatatctctgtggt
atgttgacttaagagtccttggggagcacccagaagtgaaatgtctgggt
aggtgaaccctattttttagtttagaacctccatattatttccatagtgg
atgtgccggtttatagtcccatcagccatgtgtaggggctcctctctgcc
cacacttttgagtaaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49983430_49984439
seq2: B6Ng01-085G07.b_47_1049

seq1  GAATTCTCTCAATTCCATACTTTATTTTTAAAAATATGACCAGCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAATTCCATACTTTATTTTTAAAAATATGACCAGCAGGAGT  50

seq1  TGGAGTTTATTGTTGTTATGTTACATGTAAAGTGTCTATAGAAATGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTATTGTTGTTATGTTACATGTAAAGTGTCTATAGAAATGGCAT  100

seq1  TCTTTCTTTCCTAGAATTCCTGAATCCTTTCTCAGGGCTGATTCACATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCCTAGAATTCCTGAATCCTTTCTCAGGGCTGATTCACATGC  150

seq1  TAGTTATTTCCAAAGGTGCAGAAAACAGAAACTCTTACGTAAAGAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTCCAAAGGTGCAGAAAACAGAAACTCTTACGTAAAGAGAACT  200

seq1  GAATTCAGACCAGCATGCATTTGGGTAGGATGGCCATGAAGTAAGCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAGCATGCATTTGGGTAGGATGGCCATGAAGTAAGCTTGG  250

seq1  ACCAACAGGTCAGGTGAGGTGGTCATGACTTATTTCTACTTCTTTATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGGTCAGGTGAGGTGGTCATGACTTATTTCTACTTCTTTATCCT  300

seq1  CTCAAAATTGGAGTTCAGTTCAACTTTCTGAACTATCCAGTTGTCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTGGAGTTCAGTTCAACTTTCTGAACTATCCAGTTGTCATCTG  350

seq1  TGTCTAGGAAGCTTTCAAAGCTGAAAAATAAAAATCCCCTGCTAGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGAAGCTTTCAAAGCTGAAAAATAAAAATCCCCTGCTAGGTGGA  400

seq1  GGTGAATTCTGATGGGCAAAGCTGGGGTTTCAGCTCTGAACTAATTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCTGATGGGCAAAGCTGGGGTTTCAGCTCTGAACTAATTACCA  450

seq1  TGAAGAGGGAACCTGGAACAAGGCAGGATAGACTATTAGTCAGAGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGGAACCTGGAACAAGGCAGGATAGACTATTAGTCAGAGACTGT  500

seq1  GCTCTGTTGTTAGACAGCCTCAGTGAACTTGTGTGATCCTAGGAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTGTTAGACAGCCTCAGTGAACTTGTGTGATCCTAGGAAATCAC  550

seq1  TCCTATTTGCTGTTTGATTTTCATTATCTGTAGCCTGGGGGTTATAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTGCTGTTTGATTTTCATTATCTGTAGCCTGGGGGTTATAGTGT  600

seq1  GGGGACTACAGTTCATGTTCAAACTCGGAATGATCCCAGAACAAGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTACAGTTCATGTTCAAACTCGGAATGATCCCAGAACAAGTGTGC  650

seq1  TGGCTACTTTCATGTAAAATTGACACAACCTAGAGTCATCTGAGATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTTTCATGTAAAATTGACACAACCTAGAGTCATCTGAGATGAGA  700

seq1  GAACCTCAACTAAGACAATGCCTCCATAAGATTGTACTGTAGGCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAACTAAGACAATGCCTCCATAAGATTGTACTGTAGGCAGGCAA  750

seq1  ACCTGTATGGCATTTTTTATAACAATGATCAGTGGAGGAAGGTACATTGT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCTGTATGGCATTTTTTATAACAATGATCAGTGTAGGAAGGTACATTGT  800

seq1  AGGTGACACCATCCCTGAGCTGGTGTGTTGCAGGATAATTGGTGACACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACACCATCCCTGAGCTGGTGTGTTGCAGGATAATTGGTGACACTG  850

seq1  TGAACCCCAATATTGTGTTATTAGCTGGCAAAACCTGGTTTGGTTTTGTT  900
      ||||||||||||||||||| ||||||||| ||||||||||||| ||||||
seq2  TGAACCCCAATATTGTGTTTTTAGCTGGC-AAACCTGGTTTGG-TTTGTT  898

seq1  TGTTTGTTTGTTTTGTAGCACACACCAAGAGCTATTCTACTTGAATATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTTTGTTTGTTTTGTAGCACACACCAAGAGCTATTCTACTTGAATA-TG  947

seq1  TACCTAGGATTAAATAAAATCAGGCACAGGTCAAGAGGCAGAACAAGCAA  1000
      |||||||||||||||||||||| ||||||||||||| ||| |||||||||
seq2  TACCTAGGATTAAATAAAATCA-GCACAGGTCAAGA-GCA-AACAAGCAA  994

seq1  ACAGTTGACA  1010
      ||| ||||||
seq2  ACA-TTGACA  1003

seq1: chr17_21140339_21140708
seq2: B6Ng01-085G07.g_393_684 (reverse)

seq1  TCTTAAGTCAACAT--GGCAGAGATACTTGCTCATGCATGTTAAGCAAAG  48
      ||||||||||||||    |||||||| |  | ||| | |||| |      
seq2  TCTTAAGTCAACATACCACAGAGATATTAACACATCCTTGTTTA------  44

seq1  GAATATTCAGAATATATTCACAATACAGGAGCAGGGTACTTATCTCCCAA  98
           ||| | |  |||||||||||         ||||            
seq2  ----TTTCCGCA-CTATTCACAATA---------GGTA------------  68

seq1  CGGACAAATAAAGAAAGTATCAACTAAAACTTCTGATTTTAATTCATG-T  147
       ||  ||||| ||  ||  |        |  | ||  | || || ||| |
seq2  -GG--AAATAGAGCCAGCCT--------AGGTTTGTCTATAGTTAATGCT  107

seq1  GTGCA--TACTGTATGATAGACTCATAAAACACATTCTTA---GATTTTC  192
      || ||  |||   ||||       |||  |  ||| ||||   ||   | 
seq2  GTACATGTACACAATGA------AATAGTATTCATCCTTAAGGGAAAATG  151

seq1  AAATATTCCTTTGTTCTCTGTCTTAAAGATGTTCCCAGATGTTTGTGTTA  242
      ||||     | ||  | ||   |  ||||         | ||  |||  |
seq2  AAAT-----TATG-ACACT---TGCAAGA---------AAGTGGGTG-GA  182

seq1  AGGTATGTTGGATAT--TTATAGTATGTGTGTTTCCATGTGTGTGTGTTT  290
      ||      | || ||  ||||  || |       | |  |  | |||   
seq2  AG------TAGAAATCATTATTTTAAG-------CAAAATAAGCGTG---  216

seq1  TCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGT  340
          |||   |    | | ||| | | |    ||||||||||||||||||
seq2  ---ACTCAGGC-AAATATTTCTTTATATGAACCTCTGTGTGTGTGTGTGT  262

seq1  GTGTGTGTCTGTGTGTGTGTGTGTCTGTGT  370
      |||||||| ||||||||||||||| |||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  292