BAC Information

Click to search

BAC

Clone NameB6Ng01-085H14
Chromosome18 (Build37)
Map Location 58,804,111 - 58,840,657
singlet/doubletdoublet
Overlap geneIsoc1
Upstream gene1700011I03Rik, Slc12a2, 9330166H04Rik, Fbn2, Slc27a6
Downstream geneAdamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H14.bB6Ng01-085H14.g
ACCDH899136DH899137
length1,1751,093
definitionDH899136|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H14, 5' end.DH899137|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,839,460 - 58,840,657)(58,804,111 - 58,805,220)
sequence
gaattccaaacatcacacaatcgcagaaactatctgcagctggcactatc
atgtctctgctagggcaccaggcaaatcaatagtcggctgctgcgggcag
tgtaaagcagtcttaggtcctcacacctgggattggaatgaaagcgcatt
cttatttctgtgctttcgtaacgaaagcaaaattcccactccatgtctgt
tgttctccgctctctgatcacctctagcattgctgagtaacgactcgcag
tgtcagtgacgaagtgaaaagcacggaacatggagtcaggttctcctctt
accgtgtggctttaggaaagctatctctgttccctaaacactgcatctct
aaagtccaaagttacagaaacaaaacgaacctctgactggggcctttatc
tctctctccctagctgtaaagtcatacttgcccaaataattttgaaagag
taaaatcaatccactgaagtcgagaaatatgccatttcaatggacatcat
aaactatcagttccctggctggagtaagttaccagtttaactttagatta
agtttgcacagatgttgagcatttctgttaggagcctcctgctgcttcca
gccccgttgagattcaatacacaggacccttcttgtttacattctgaagt
tctttatttatgtcaatgaaaggaatttcattatcctacaaagtcatgga
cacttccacttcaaagtattacaatcagttcagttttccaataatcatag
agtaaaagccttgccatcttcttgccatggttcacaaaacagaaaagaga
aggcagagttcacaattattctgagcgtccatgtatttacattcctggac
ctgatacaatttattcaatttcacactcactagctggtgtctgtgtgaag
atgcccatgccttaatccctagatcctggaacagagatacatgggccaaa
gggtgttaaggctgcagttgaatacgttgctattagaaaccttaaatcac
atgagatctagcagctaagagggacctaaggacccgcacttgttgcttga
gaagatggaagtatgggacaaacaacaataactaaatcaacaacaaaagg
tcctcaggagcgattctagaacaagaacttgcagaataaaggtcatcctt
ataagggtcggaaagatcattgcct
gaattcatactgacaatatgaatcatctctatgtcatttcggaatgactc
atattagctaatgactggccttcctaggactggccatatgtttttgttgt
aaatactattaactgatggactgcagccattatctaaattagcagatatt
taagcctagatgaacagtatgaaacgggggcagttggcagcatggtgtgt
ttggctgcagggaaggtgaactgtcagaggcttagtggcttgttattctt
tgatctgtggaatacatattttctctaggacatcccttgggggggggggt
cacatgtagtactcacaaaaaaattatccaggaaaagattagtatttccc
atccgagttaccaaacattagcttggttttctttccttctaatgcaatat
attaaaatagatgagggcaattgaaatactaatgttttaaagtgaacttg
tttctgacaatatctatgatgttctatatgatattgctttagcaaggaag
aatgttctatgcagttaatgtaacattatatttgggcattcgataaatat
gaacaatgcttaatctcataatttgttattgagaagaaaattgaaaccat
agggagagtcatctaatgccatacagttggctaaaaatagaaaaaaatgt
tttaaagtggcaaaaaaattcgtacattttaatctcatattttgactgaa
gtaatcccagtagggggtttacttggcaatatgttatcaacttcaaaata
ctctgttatgaaatccagagatgctgtcacataagtcactaggaatcata
gaaagatcactgcagcgttttctaaactatgagaaaattgcaaacccatt
aattttcagatgctgaatgagtgagtggactggattacattcattcaatt
aaatgttaaagaacggttgaaaaacagcagactaagtcagtacgactcaa
ctttctaatgctgtgactctttaagacagttcctcattttggatgacaca
acaacattatttttgttgctgcttcacactgtattgctactctatgactg
tgatgtaatatctgaatgcagacacctgtaaggtcatttgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58839460_58840657
seq2: B6Ng01-085H14.b_45_1219 (reverse)

seq1  AGGCAATGATCTTTTCTGGGGCCCTGTATAAGGGATGACTTATATCCTGC  50
      |||||||||||||| |   | |||| ||||| ||||||| | ||| ||||
seq2  AGGCAATGATCTTTCC---GACCCT-TATAA-GGATGACCTTTATTCTGC  45

seq1  AGTTCTCTGGTTCTAGAATCTGCTCCTGTGGGACTTTTTGTTTGTTTGGT  100
      |  | ||| ||||||||||| |||||||  |||| ||||| |||||  | 
seq2  AAGT-TCTTGTTCTAGAATC-GCTCCTG-AGGACCTTTTG-TTGTT--GA  89

seq1  TTTGGTTTATTTGTTTGTTTTGTCCCATTACTTCCATCTTCTCAGGCAAC  150
      ||| |||   |||||   ||||||||| |||||||||||||||| |||||
seq2  TTTAGTT--ATTGTT--GTTTGTCCCA-TACTTCCATCTTCTCAAGCAAC  134

seq1  AAGTGCGGGTCCTTAGGTCCCTTCTTAGCCTGGCCTAAGATCTCATGTGA  200
      ||||||||||||||||||||| |||||| |||  || |||||||||||||
seq2  AAGTGCGGGTCCTTAGGTCCC-TCTTAG-CTG--CT-AGATCTCATGTGA  179

seq1  TTTAAGGTTTCTAATTAGCAACCGTATTCCACCTGCAGCCTTAACACCCT  250
      |||||||||||||| |||||| |||||| || ||||||||||||||||||
seq2  TTTAAGGTTTCTAA-TAGCAA-CGTATT-CAACTGCAGCCTTAACACCCT  226

seq1  TTGG-CCATGTATCTCTGTTCCAGGATCTAGGGATTAAGGCATGGGCATC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCATGTATCTCTGTTCCAGGATCTAGGGATTAAGGCATGGGCATC  276

seq1  TTCACACAGACACCAGCTAGTGAGTGTG-AATTGAATTAAATTGTATCAG  348
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TTCACACAGACACCAGCTAGTGAGTGTGAAATTGAA-TAAATTGTATCAG  325

seq1  GTCCAGGAATGTAAATACATGGACGCTCAGAATAATTGTGAACTCTGCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAATGTAAATACATGGACGCTCAGAATAATTGTGAACTCTGCCT  375

seq1  TCTCTTTTCTGTTTTGTGAACCATGGCAAGAAGATGGCAAGGCTTTTACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTGTTTTGTGAACCATGGCAAGAAGATGGCAAGGCTTTTACT  425

seq1  CTATGATTATTGGAAAACTGAACTGATTGTAATACTTTGAAGTGGAAGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTATTGGAAAACTGAACTGATTGTAATACTTTGAAGTGGAAGTG  475

seq1  TCCATGACTTTGTAGGATAATGAAATTCCTTTCATTGACATAAATAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTTTGTAGGATAATGAAATTCCTTTCATTGACATAAATAAAGA  525

seq1  ACTTCAGAATGTAAACAAGAAGGGTCCTGTGTATTGAATCTCAACGGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAATGTAAACAAGAAGGGTCCTGTGTATTGAATCTCAACGGGGC  575

seq1  TGGAAGCAGCAGGAGGCTCCTAACAGAAATGCTCAACATCTGTGCAAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAGCAGGAGGCTCCTAACAGAAATGCTCAACATCTGTGCAAACT  625

seq1  TAATCTAAAGTTAAACTGGTAACTTACTCCAGCCAGGGAACTGATAGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAAGTTAAACTGGTAACTTACTCCAGCCAGGGAACTGATAGTTT  675

seq1  ATGATGTCCATTGAAATGGCATATTTCTCGACTTCAGTGGATTGATTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCCATTGAAATGGCATATTTCTCGACTTCAGTGGATTGATTTTA  725

seq1  CTCTTTCAAAATTATTTGGGCAAGTATGACTTTACAGCTAGGGAGAGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAAAATTATTTGGGCAAGTATGACTTTACAGCTAGGGAGAGAGA  775

seq1  GATAAAGGCCCCAGTCAGAGGTTCGTTTTGTTTCTGTAACTTTGGACTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGCCCCAGTCAGAGGTTCGTTTTGTTTCTGTAACTTTGGACTTT  825

seq1  AGAGATGCAGTGTTTAGGGAACAGAGATAGCTTTCCTAAAGCCACACGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAGTGTTTAGGGAACAGAGATAGCTTTCCTAAAGCCACACGGT  875

seq1  AAGAGGAGAACCTGACTCCATGTTCCGTGCTTTTCACTTCGTCACTGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAACCTGACTCCATGTTCCGTGCTTTTCACTTCGTCACTGACA  925

seq1  CTGCGAGTCGTTACTCAGCAATGCTAGAGGTGATCAGAGAGCGGAGAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGTCGTTACTCAGCAATGCTAGAGGTGATCAGAGAGCGGAGAACA  975

seq1  ACAGACATGGAGTGGGAATTTTGCTTTCGTTACGAAAGCACAGAAATAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGGAGTGGGAATTTTGCTTTCGTTACGAAAGCACAGAAATAAG  1025

seq1  AATGCGCTTTCATTCCAATCCCAGGTGTGAGGACCTAAGACTGCTTTACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGCTTTCATTCCAATCCCAGGTGTGAGGACCTAAGACTGCTTTACA  1075

seq1  CTGCCCGCAGCAGCCGACTATTGATTTGCCTGGTGCCCTAGCAGAGACAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGCAGCAGCCGACTATTGATTTGCCTGGTGCCCTAGCAGAGACAT  1125

seq1  GATAGTGCCAGCTGCAGATAGTTTCTGCGATTGTGTGATGTTTGGAATTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCCAGCTGCAGATAGTTTCTGCGATTGTGTGATGTTTGGAATTC  1175

seq1: chr18_58804111_58805220
seq2: B6Ng01-085H14.g_69_1161

seq1  GAATTCATACTGACAATATGAATCATCTCTATGTCATTTCGGAATGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGACAATATGAATCATCTCTATGTCATTTCGGAATGACTC  50

seq1  ATATTAGCTAATGACTGGCCTTCCTAGGACTGGCCATATGTTTTTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCTAATGACTGGCCTTCCTAGGACTGGCCATATGTTTTTGTTGT  100

seq1  AAATACTATTAACTGATGGACTGCAGCCATTATCTAAATTAGCAGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATTAACTGATGGACTGCAGCCATTATCTAAATTAGCAGATATT  150

seq1  TAAGCCTAGATGAACAGTATGAAACGGGGGCAGTTGGCAGCATGGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTAGATGAACAGTATGAAACGGGGGCAGTTGGCAGCATGGTGTGT  200

seq1  TTGGCTGCAGGGAAGGTGAACTGTCAGAGGCTTAGTGGCTTGTTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCAGGGAAGGTGAACTGTCAGAGGCTTAGTGGCTTGTTATTCTT  250

seq1  TGATCTGTGGAATACATATTTTCTCTAGGACATCCCTTGGGGGGGGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTGGAATACATATTTTCTCTAGGACATCCCTTGGGGGGGGGGGT  300

seq1  CACATGTAGTACTCACAAAAAAATTATCCAGGAAAAGATTAGTATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGTACTCACAAAAAAATTATCCAGGAAAAGATTAGTATTTCCC  350

seq1  ATCCGAGTTACCAAACATTAGCTTGGTTTTCTTTCCTTCTAATGCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGTTACCAAACATTAGCTTGGTTTTCTTTCCTTCTAATGCAATAT  400

seq1  ATTAAAATAGATGAGGGCAATTGAAATACTAATGTTTTAAAGTGAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGATGAGGGCAATTGAAATACTAATGTTTTAAAGTGAACTTG  450

seq1  TTTCTGACAATATCTATGATGTTCTATATGATATTGCTTTAGCAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACAATATCTATGATGTTCTATATGATATTGCTTTAGCAAGGAAG  500

seq1  AATGTTCTATGCAGTTAATGTAACATTATATTTGGGCATTCGATAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTATGCAGTTAATGTAACATTATATTTGGGCATTCGATAAATAT  550

seq1  GAACAATGCTTAATCTCATAATTTGTTATTGAGAAGAAAATTGAAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGCTTAATCTCATAATTTGTTATTGAGAAGAAAATTGAAACCAT  600

seq1  AGGGAGAGTCATCTAATGCCATACAGTTGGCTAAAAATAGAAAAAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGTCATCTAATGCCATACAGTTGGCTAAAAATAGAAAAAAATGT  650

seq1  TTTAAAGTGGCAAAAAAATTCGTACATTTTAATCTCATATTTTGACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGGCAAAAAAATTCGTACATTTTAATCTCATATTTTGACTGAA  700

seq1  GTAATCCCAGTAGGGGGTTTACTTGGCAATATGTTATCAACTTCAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAGTAGGGGGTTTACTTGGCAATATGTTATCAACTTCAAAATA  750

seq1  CTCTGTTATGAAATCCAGAGATGCTGTCACATAAGTCACTAGGAATCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATGAAATCCAGAGATGCTGTCACATAAGTCACTAGGAATCATA  800

seq1  GAAAGATCACTGCAGCGTTTTCTAAACTATGAGAAAATTGCAAACCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCACTGCAGCGTTTTCTAAACTATGAGAAAATTGCAAACCCATT  850

seq1  AATATTCAGATGCTGAATGAGTGAGTGGACTGGATTACATTCATTCAATT  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGATGCTGAATGAGTGAGTGGACTGGATTACATTCATTCAATT  900

seq1  AAATGTTAAAGAACGGTTGAAAAACAGCAGACTAAGTCAGTACGACTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAAGAACGGTTGAAAAACAGCAGACTAAGTCAGTACGACTCAA  950

seq1  CCTTCCTAATGCTGTGACTCTTTAAGACAGTTCCTCATTTTGGATGACAC  1000
       ||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  -CTTTCTAATGCTGTGACTCTTTAAGACAGTTCCTCATTTTGGATGACA-  998

seq1  CAACCAAACAATTATTTTTGTTGCTGCTTCACAACTGTAATTTTGCTACT  1050
      ||||  ||| |||||||||||||||||||||| ||||||   ||||||||
seq2  CAAC--AAC-ATTATTTTTGTTGCTGCTTCAC-ACTGTA---TTGCTACT  1041

seq1  CTTATGAACTGTGATGTAAATATCTGATATGCAGGACACCTGTGAAAGGG  1100
      | |||| |||||||||| ||||||||| ||||| |||||||||   | ||
seq2  C-TATG-ACTGTGATGT-AATATCTGA-ATGCA-GACACCTGT---AAGG  1083

seq1  TCATTTGACT  1110
      ||||||||||
seq2  TCATTTGACT  1093