BAC Information

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BAC

Clone NameB6Ng01-085M06
Chromosome18 (Build37)
Map Location 55,355,094 - 55,483,869
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M06.bB6Ng01-085M06.g
ACCDH899344DH899345
length1,0811,088
definitionDH899344|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M06, 5' end.DH899345|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,355,094 - 55,356,185)(55,482,765 - 55,483,869)
sequence
gaattcacattggattaaaatgagctatctgggtcagggtaggtaatttc
agattttggtcaaagataagactcattcaatattcctagaaatagtagat
tggaaatgtagttctttagtcatctatgtggtaaaagcaaacatcaatag
agcacacattcaaaagaaagcgtatgaaacagtacttgtgtgccttttag
gttaaggaatgactgacccccagaaggcattcccagaaccattccaagca
cccacattcttcaaacatggcactcatggtatctgtttagattagagtgc
atcaacttcacattagaaaatgaaatgtttgcgcatgataacaattctta
ttttcctccacttggaactaaacttgcttacaagtcacagctaaaggaaa
caaagagggcagcctgattggctaccctttcttcttagctggacattaca
caagtctacagagtggtatctatgtgaccagtaccctgtcccagccagga
agtgatatttcagaacaagctttttttttttttttaaaaaaagacaatac
tccattttctggaccctttttttttttttttttttttttttttttttttt
gccaagggaaaatgtaggcgtcttctggtttccaaccggactttttgatt
cctgaaaacaagtcagtagcggccgtttaccatgtgacccgggccccgga
atcaacccccctgcaaattttcatttgacaaaaggaaagcggggcccccg
ggaacacttgccaacgggctcctgtaatttctagggaagggaatcggtat
ggattctttttaaggggaatttcagtctcccaattgaatggggccatttt
ggggttcaaaagcgaactttctctaaaatgttctttaacgcgtggtggaa
ggtttcctctgtgtctttttggaagcacacatattttgtttgttcttttg
ataaaaaaagtctcctggggctttgtgaaacccgtgtgtctggtaacatg
gtgtaatcaaaaatccaaagggagaaaaaaaatctttaaaatttgggtct
aaaaaacgtctgttcaggactgtgggatact
gaattcaatctcagattccatcaacctgttcctattactatgaatgggat
tcccttgtctctgaggtttcctaatgagactcacttcagtcccggtaagc
tagtttacattatccttctcatacttaattcttctccatagctgccgcca
aacagaacttgaaacacagtaatcactcaagatttactagtgactagatt
cataatttttaacatcatgctatgtcttaaatatgtctcttgaaagctgc
cattttgcacacagagagcctggcacctcaccaaacaccaaatcctccat
ctccctaaaattccagcttgcagatttaaaagaaaattgctttctgttgt
ttataaattgcttcttccgtgacattacattacagtgggaccagcagact
aaagcacattgctggcttcccatttatttgtatgcaatatcagttatcac
atacaggtgactgtgaccatttcaagactgtagcaagtaagttcttgaat
ttacaaataaatctaaggactattagttaatgtaagaaagtgaaaaaagc
attgttagtggtgaatgtttattaggcacagttactttaaacagaatatt
taagaattattaaacccatgaagtacctatattttgatactcccaaagaa
atatggacttatggggacctcctccagcaacggttgaggagaaggaagca
atgcaacgtagctctctgacccttcgtttctctgaaagcttttatcttct
aggatgtaagttcccaaggagcatatctgtcagccttatagctagaaacc
tggcaacttgcacttacctgccaggaaatgaaggagagagcctggctgct
tggcaatcttgtgcttctatttatagaatgtgtatggatgaaagaagccc
acagaaaataaggttgcatatgtctccactctgagcctggagatagtgat
aggcaatggcttccacttttgggtgggccctttgaggatcacatattcaa
ttatctgcatgcccatatttgcattaatttcaaaccctagcaaatttccg
gtatgaggagcatgaattattttatggttgaggtcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55355094_55356185
seq2: B6Ng01-085M06.b_39_1115

seq1  GAATTCACATTGGATTAAAATGAGCTATCTGGGTCAGGGTAGGTAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGGATTAAAATGAGCTATCTGGGTCAGGGTAGGTAATTTC  50

seq1  AGATTTTGGTCAAAGATAAGACTCATTCAATATTCCTAGAAATAGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGTCAAAGATAAGACTCATTCAATATTCCTAGAAATAGTAGAT  100

seq1  TGGAAATGTAGTTCTTTAGTCATCTATGTGGTAAAAGCAAACATCAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAGTTCTTTAGTCATCTATGTGGTAAAAGCAAACATCAATAG  150

seq1  AGCACACATTCAAAAGAAAGCGTATGAAACAGTACTTGTGTGCCTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTCAAAAGAAAGCGTATGAAACAGTACTTGTGTGCCTTTTAG  200

seq1  GTTAAGGAATGACTGACCCCCAGAAGGCATTCCCAGAACCATTCCAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGAATGACTGACCCCCAGAAGGCATTCCCAGAACCATTCCAAGCA  250

seq1  CCCACATTCTTCAAACATGGCACTCATGGTATCTGTTTAGATTAGAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTCTTCAAACATGGCACTCATGGTATCTGTTTAGATTAGAGTGC  300

seq1  ATCAACTTCACATTAGAAAATGAAATGTTTGCGCATGATAACAATTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTCACATTAGAAAATGAAATGTTTGCGCATGATAACAATTCTTA  350

seq1  TTTTCCTCCACTTGGAACTAAACTTGCTTACAAGTCACAGCTAAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCACTTGGAACTAAACTTGCTTACAAGTCACAGCTAAAGGAAA  400

seq1  CAAAGAGGGCAGCCTGATTGGCTACCCTTTCTTCTTAGCTGGACATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGGCAGCCTGATTGGCTACCCTTTCTTCTTAGCTGGACATTACA  450

seq1  CAAGTCTACAGAGTGGTATCTATGTGACCAGTACCCTGTCCCAGCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTACAGAGTGGTATCTATGTGACCAGTACCCTGTCCCAGCCAGGA  500

seq1  AGTGATATTTCAGAACAAGCTTTTTTTTTTTTTTTAAAAAAAGACAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTCAGAACAAGCTTTTTTTTTTTTTTTAAAAAAAGACAATAC  550

seq1  TCCATTTTCTGGACCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTGGACCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  600

seq1  GCCAAGGCAAAATGTAGGCGTCTTCTGTTTCCTAACTGAACTCTATGATT  650
      ||||||| ||||||||||||||||||| || | ||| | ||| | |||||
seq2  GCCAAGGGAAAATGTAGGCGTCTTCTGGTTTCCAACCGGACTTTTTGATT  650

seq1  CATGAAAGCAAGTCAGTAAGCGTCAGTTTACAATGTGACCAGGGCACTGG  700
      | ||||| ||||||||| |||| | |||||| |||||||| |||| | ||
seq2  CCTGAAAACAAGTCAGT-AGCGGCCGTTTACCATGTGACCCGGGCCCCGG  699

seq1  ATTCAACACCACTGCAAAATATTACATTTGACAAGAGGAATGCGGGCCTC  750
      | ||||| || |||||||   || |||||||||| ||||| ||||| | |
seq2  AATCAACCCCCCTGCAAA--TTTTCATTTGACAAAAGGAAAGCGGGGCCC  747

seq1  CGTGGAACACTTGCCAGC-GGCTCCTGCAATTACTAGGCAAGGCAACTGG  799
      |  ||||||||||||| | |||||||| |||| ||||| |||| ||  ||
seq2  CCGGGAACACTTGCCAACGGGCTCCTGTAATTTCTAGGGAAGGGAATCGG  797

seq1  TAATGAATTCTTTTAAGGTGGAATTCAAGTCTCCCGATTGAATGTTGCCC  849
      | ||| |||||||| | | ||||||  |||||||| ||||||||  | ||
seq2  T-ATGGATTCTTTTTAAGGGGAATTTCAGTCTCCCAATTGAATG-GGGCC  845

seq1  ATTATTGGAGTTCAAAGGC-AACTATCTCTAGAATTGTTCTTTTAACGCT  898
      ||| |||| ||||||| || |||| |||||| || ||||| |||||||| 
seq2  ATT-TTGGGGTTCAAAAGCGAACTTTCTCTA-AAATGTTC-TTTAACGCG  892

seq1  TGTTGGATGGTTCTCCT-TGT-TCTTTTCTTGTAGGCACACAATTGTTGT  946
      || |||| |||| |||| ||| |||||  ||| | |||||||  | ||||
seq2  TGGTGGAAGGTT-TCCTCTGTGTCTTT--TTGGAAGCACACATATTTTGT  939

seq1  CTTGATCTTGTGATAAAAAGAGCTTCTGTGGGTCTTTGTAGTAAGCCCAG  996
       ||| |||| ||||||||| ||  ||  |||| |||||| | ||  || |
seq2  -TTGTTCTTTTGATAAAAAAAGTCTC-CTGGGGCTTTGT-GAAA--CCCG  984

seq1  TTGGCTTGGTAACATGGCTGTAGTCAGAATTCCAAAGTGGGAAAACAAAG  1046
      |  |  ||||||||||| |||| ||| || ||||||| | ||||| ||| 
seq2  TGTGTCTGGTAACATGG-TGTAATCAAAAATCCAAAGGGAGAAAA-AAAA  1032

seq1  ACTTAGAAATTACTGGCTGAGAAACAGCTTGTTCAGGACTGTGGGA  1092
       |||  |||||   | || | |||| |  |||||||||||||||||
seq2  TCTTTAAAATTTGGGTCTAAAAAAC-GTCTGTTCAGGACTGTGGGA  1077

seq1: chr18_55482765_55483869
seq2: B6Ng01-085M06.g_72_1159 (reverse)

seq1  GGTGACCCCTCAACCATAAAATTATTTCATTGCTACTTCATAACTGTAAT  50
      |||||  |||||||||||||| || |||| |||| | |||| || | || 
seq2  GGTGA--CCTCAACCATAAAA-TAATTCA-TGCT-CCTCAT-ACCGGAAA  44

seq1  TTTGCTAGTGTTTTAAATTTTAATGCAAATATTGGGCATGCAGGATATCT  100
      |||||||| |||| |||  |||||||||||| |||||||||| ||||  |
seq2  TTTGCTAGGGTTTGAAA--TTAATGCAAATA-TGGGCATGCA-GATAATT  90

seq1  G-ATATGTGATCCTCAAAAGGGCCACAACCCAAATGTTGAAAGCCATTGC  149
      | |||||||||||||||| || ||   ||||||| | || ||||||||||
seq2  GAATATGTGATCCTCAAAGGGCCC---ACCCAAAAG-TGGAAGCCATTGC  136

seq1  CTATCACTATACTCCAGGCTCAGAGTGGAAGACATATTGCAGCCTTATTT  199
      |||||||||| ||||||||||||||||| ||||||| |||| ||||||||
seq2  CTATCACTAT-CTCCAGGCTCAGAGTGG-AGACATA-TGCAACCTTATTT  183

seq1  CTTGTGGGCTTCTTTCATCCATACACATTCTATAAATAGAAGCACAAGAT  249
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGCTTCTTTCATCCATACACATTCTATAAATAGAAGCACAAGAT  233

seq1  TGCCAAGGCAGCCAGGCTCTCTCCTTCATTTCCTGGCAGGTGAAGTGCAA  299
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCAA-GCAGCCAGGCTCTCTCCTTCATTTCCTGGCAGGT-AAGTGCAA  281

seq1  GTTGCCAGGTTTCTAGCTATAAGGCTGACAGATATGCTCCTTGGGAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAGGTTTCTAGCTATAAGGCTGACAGATATGCTCCTTGGGAACTT  331

seq1  ACATCCTAGAAGAT-AAAGCTTTCAGAGAAACGAAGGGTCAGAGAGCTAC  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACATCCTAGAAGATAAAAGCTTTCAGAGAAACGAAGGGTCAGAGAGCTAC  381

seq1  GTTGCATTGCTTCCTTCTCCTCAACCGTTGCTGGAGGAGGTCCCCATAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTGCTTCCTTCTCCTCAACCGTTGCTGGAGGAGGTCCCCATAAG  431

seq1  TCCATATTTCTTTGGGAGTATCAAAATATAGGTACTTCATGGGTTTAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTCTTTGGGAGTATCAAAATATAGGTACTTCATGGGTTTAATA  481

seq1  ATTCTTAAATATTCTGTTTAAAGTAACTGTGCCTAATAAACATTCACCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAATATTCTGTTTAAAGTAACTGTGCCTAATAAACATTCACCAC  531

seq1  TAACAATGCTTTTTTCACTTTCTTACATTAACTAATAGTCCTTAGATTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGCTTTTTTCACTTTCTTACATTAACTAATAGTCCTTAGATTTA  581

seq1  TTTGTAAATTCAAGAACTTACTTGCTACAGTCTTGAAATGGTCACAGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATTCAAGAACTTACTTGCTACAGTCTTGAAATGGTCACAGTCA  631

seq1  CCTGTATGTGATAACTGATATTGCATACAAATAAATGGGAAGCCAGCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTGATAACTGATATTGCATACAAATAAATGGGAAGCCAGCAAT  681

seq1  GTGCTTTAGTCTGCTGGTCCCACTGTAATGTAATGTCACGGAAGAAGCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGTCTGCTGGTCCCACTGTAATGTAATGTCACGGAAGAAGCAA  731

seq1  TTTATAAACAACAGAAAGCAATTTTCTTTTAAATCTGCAAGCTGGAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACAACAGAAAGCAATTTTCTTTTAAATCTGCAAGCTGGAATTT  781

seq1  TAGGGAGATGGAGGATTTGGTGTTTGGTGAGGTGCCAGGCTCTCTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGATGGAGGATTTGGTGTTTGGTGAGGTGCCAGGCTCTCTGTGTG  831

seq1  CAAAATGGCAGCTTTCAAGAGACATATTTAAGACATAGCATGATGTTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCAGCTTTCAAGAGACATATTTAAGACATAGCATGATGTTAAA  881

seq1  AATTATGAATCTAGTCACTAGTAAATCTTGAGTGATTACTGTGTTTCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAATCTAGTCACTAGTAAATCTTGAGTGATTACTGTGTTTCAAG  931

seq1  TTCTGTTTGGCGGCAGCTATGGAGAAGAATTAAGTATGAGAAGGATAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGGCGGCAGCTATGGAGAAGAATTAAGTATGAGAAGGATAATG  981

seq1  TAAACTAGCTTACCGGGACTGAAGTGAGTCTCATTAGGAAACCTCAGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGCTTACCGGGACTGAAGTGAGTCTCATTAGGAAACCTCAGAGA  1031

seq1  CAAGGGAATCCCATTCATAGTAATAGGAACAGGTTGATGGAATCTGAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATCCCATTCATAGTAATAGGAACAGGTTGATGGAATCTGAGAT  1081

seq1  TGAATTC  1105
      |||||||
seq2  TGAATTC  1088