BAC Information

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BAC

Clone NameB6Ng01-086H24
Chromosome18 (Build37)
Map Location 68,901,055 - 69,019,386
singlet/doubletdoublet
Overlap genenone
Upstream geneSeh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H24.bB6Ng01-086H24.g
ACCDH899880DH899881
length1,1481,061
definitionDH899880|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H24, 5' end.DH899881|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,901,055 - 68,902,213)(69,018,325 - 69,019,386)
sequence
gaattcatcacacaggcgtggtatgcaaaagctgcaggaggaagatgctt
agatttaatgcacatgttatgaagtaaaattaggaagggaaaaaatcaga
gaagaaagagaaacacatggataaagaggagaaggaaaatctatgggaga
aaacagtggtacaaatctgtatattcattttgcaattaaaaattttttaa
aaataattcctatttttgtatctggagatttgagtagttttaggtgacag
aaaacatatgatgattttcttataaataaacaaataaatcaatcaataaa
ctgagaaagctcttctatcatgtcagtcagtagcaaacatcactgagagt
gacgtgtagccgaggttgccgtctctgttaaatcctgatgatgtgtggat
gtgaagtttagattactgcacccttctctcaccttttccaagattatctt
cacttatgtcatttgaagcctggagcacaactgaaggagttgctctccta
tggaatgctaacagaggcaagcataggtttctgggaagttacccactggc
cggctatttgtgcctgaccctacacttttgccgctatatgagcagaacct
ttgggtggcttctgccttgtgtgtcgcagagatcttgagaacgtttagca
gactctcaattaccttgattttactttgagctgcccttcaaagtatcatt
tattgcaattcgattattagagcgaagaataaagtcatggacttccatta
ttaactccatgttttaggaacactctggatatttggcaaagggaatttgt
ccaggggaaccttggagagctctcaagacagtgttgctaatataggcctt
ctgttctcattgtagctttggatatgggcttcttaactcaagtcccttct
tctcttttctttctttcttctcccccagcactccctaaccccccccagat
gctggacagggctgttaaacagctgctgtgtttcagcaagttgctggtac
attttatagatgtaagtctgtgtgtatgtgtgtgtgcacaccagtaacaa
catgtgtacattttaaaccatattagcacgtgtaagactgaaagcttggc
agtcaatcagaattccaagtactggagctgtatgtctcccttctctat
gaattctgttctcctgcaccccgaggccatggtctccctcacaggagatg
tctcaagctcaaagggtcctgtaatctctctcctcctccacagtcttggt
ggcttccctttcttgttagaatctctgcagcgtttttcaaagacaaacaa
atacttcctagagctaaagagatctttttgtttttattaaaagaatcaaa
gactggaagggtgggtggctgggaagagaaaatttctcatcagaaacaaa
ctctgcaaagtgaccacatcgtttgggtgttttgtggagatctggaagag
aaacacagacacaattctgtctctccaggaacctgccctctaaaatggaa
aatattgatacaggctcaaaacaaaaagacacagagacaactgcacaaac
attaaaaaaataaataattaaacaagagaccaaaatattgacagaaacag
ccccgcagcctgggacaatttgttttcgcttcaaacttatttttctcact
tggcttttgcattaaaaaaaaggcatgccatgcaagcggctgagaaaact
cagaggctgtcagatcaaagacaggcggcaacagcacaccccacaccagg
gatggggactgggctgggaagccccatgggagcactagtacaaggggctc
ccctgtgccctgataacttgaattctagtctagtctgtaccccacacttt
gtacaatttggttgtcagtgcctttcagtgggatgtgggaaggagcccca
tccactctggctgtgcctccctcgctgatgcagagcgacagtggcaggga
tgagaagctgagagctatattaaacaagtatgtcaaaaggttgaggcact
aagcaatcatgctaagtagaaggctagccaggtctacagataaacacaca
acaacaaaaagatatttgctgtgcacctgggacattagaggaccctttgt
tctctgtgctattctttccagacagggagcaccagattttatgccatttt
atatatgaacacagaaaattctaacctgtctggacaggtgataggcccta
ggtgtaggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68901055_68902213
seq2: B6Ng01-086H24.b_49_1196

seq1  GAATTCATCACACAGGCGTGGTATGCAAAAGCTGCAGGAGGAAGATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACACAGGCGTGGTATGCAAAAGCTGCAGGAGGAAGATGCTT  50

seq1  AGATTTAATGCACATGTTATGAAGTAAAATTAGGAAGGGAAAAAATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATGCACATGTTATGAAGTAAAATTAGGAAGGGAAAAAATCAGA  100

seq1  GAAGAAAGAGAAACACATGGATAAAGAGGAGAAGGAAAATCTATGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGAAACACATGGATAAAGAGGAGAAGGAAAATCTATGGGAGA  150

seq1  AAACAGTGGTACAAATCTGTATATTCATTTTGCAATTAAAAATTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGTACAAATCTGTATATTCATTTTGCAATTAAAAATTTTTTAA  200

seq1  AAATAATTCCTATTTTTGTATCTGGAGATTTGAGTAGTTTTAGGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCCTATTTTTGTATCTGGAGATTTGAGTAGTTTTAGGTGACAG  250

seq1  AAAACATATGATGATTTTCTTATAAATAAACAAATAAATCAATCAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATGATGATTTTCTTATAAATAAACAAATAAATCAATCAATAAA  300

seq1  CTGAGAAAGCTCTTCTATCATGTCAGTCAGTAGCAAACATCACTGAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCTCTTCTATCATGTCAGTCAGTAGCAAACATCACTGAGAGT  350

seq1  GACGTGTAGCCGAGGTTGCCGTCTCTGTTAAATCCTGATGATGTGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTAGCCGAGGTTGCCGTCTCTGTTAAATCCTGATGATGTGTGGAT  400

seq1  GTGAAGTTTAGATTACTGCACCCTTCTCTCACCTTTTCCAAGATTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTTAGATTACTGCACCCTTCTCTCACCTTTTCCAAGATTATCTT  450

seq1  CACTTATGTCATTTGAAGCCTGGAGCACAACTGAAGGAGTTGCTCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGTCATTTGAAGCCTGGAGCACAACTGAAGGAGTTGCTCTCCTA  500

seq1  TGGAATGCTAACAGAGGCAAGCATAGGTTTCTGGGAAGTTACCCACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTAACAGAGGCAAGCATAGGTTTCTGGGAAGTTACCCACTGGC  550

seq1  CGGCTATTTGTGCCTGACCCTACACTTTTGCCGCTATATGAGCAGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTATTTGTGCCTGACCCTACACTTTTGCCGCTATATGAGCAGAACCT  600

seq1  TTGGGTGGCTTCTGCCTTGTGTGTCGCAGAGATCTTGAGAACGTTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGCTTCTGCCTTGTGTGTCGCAGAGATCTTGAGAACGTTTAGCA  650

seq1  GACTCTCAATTACCTTGATTTTACTTTGAGCTGCCCTTCAAAGTATCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAATTACCTTGATTTTACTTTGAGCTGCCCTTCAAAGTATCATT  700

seq1  TATTGCAATTCGATTATTAGAGCGAAGAATAAAGTCATGGACTTCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAATTCGATTATTAGAGCGAAGAATAAAGTCATGGACTTCCATTA  750

seq1  TTAACTCCATGTTTTAGGAACACTCTGGATATTTGGCAAAGGGAATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCATGTTTTAGGAACACTCTGGATATTTGGCAAAGGGAATTTGT  800

seq1  CCAGGGGAACCTTGGAGAGCTCTCAAGACAGTGTTGCTAATATAGGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAACCTTGGAGAGCTCTCAAGACAGTGTTGCTAATATAGGCCTT  850

seq1  CTGTTCTCATTGTAGCTTTGGATATGGGCTTCTTAACTCAAGTCCCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCATTGTAGCTTTGGATATGGGCTTCTTAACTCAAGTCCCTTCT  900

seq1  TCTCTTTTCTTTCTTTCTTCTCCCCCAGCACTCCCTAACCCCCCCCAGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCTTTTCTTTCTTTCTTCTCCCCCAGCACTCCCTAACCCCCCCCAG-A  949

seq1  TGCTGGACAGGGCTGTTAAACAGCTGCTGTGTTTCAGCAAGTTGCTGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACAGGGCTGTTAAACAGCTGCTGTGTTTCAGCAAGTTGCTGGTA  999

seq1  CATTTTATAGATGTAAGTCTTGTGTGTATGTGTGTGTGCACACCAGTAAA  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CATTTTATAGATGTAAGTC-TGTGTGTATGTGTGTGTGCACACCAGTAA-  1047

seq1  CAAACATGTGTACATTTAAAACCAATATTAGCACAGTGTTAAGACTGAAA  1100
        ||||||||||||||| ||||| |||||||||| ||| |||||||||||
seq2  -CAACATGTGTACATTTTAAACC-ATATTAGCAC-GTG-TAAGACTGAAA  1093

seq1  GCTTTGCAGTCAAATCAGGAAATTCCAAAGTTACT-GAGCTGTAATGGTC  1149
      |||| |||||| ||||||  ||||||||   |||| ||||||||   |||
seq2  GCTTGGCAGTC-AATCAG--AATTCCAA--GTACTGGAGCTGTA--TGTC  1136

seq1  TCC--TCTCTAT  1159
      |||  |||||||
seq2  TCCCTTCTCTAT  1148

seq1: chr18_69018325_69019386
seq2: B6Ng01-086H24.g_68_1128 (reverse)

seq1  ACACACTACACCTAGG--CTATTCACCTGT-CAGACAGGTTAGAA-TTTC  46
      |||| |||||||||||  ||| |||||||| |||||||||||||| ||||
seq2  ACAC-CTACACCTAGGGCCTA-TCACCTGTCCAGACAGGTTAGAATTTTC  48

seq1  TGTGTTCATAATATAAAATGGCATTAAAATCTGGTTGCTCCCTGTCTGGA  96
      ||||||||| ||||||||||||| |||||||||| |||||||||||||||
seq2  TGTGTTCAT-ATATAAAATGGCA-TAAAATCTGG-TGCTCCCTGTCTGGA  95

seq1  AAGAATAGCACAGAGAACAAAGGGTCCTCTAATGTCCCAGGTGCACAGCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGCACAGAGAACAAAGGGTCCTCTAATGTCCCAGGTGCACAGCA  145

seq1  AATATCTTTTTGTTGTTGTGTGTTTATCTGTAGACCTGGCTAGCCTTCTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTTTGTTGTTGTGTGTTTATCTGTAGACCTGGCTAGCCTTCTA  195

seq1  CTTAGCATGATTGCTTAGTGCCTCAACCTTTTGACATACTTGTTTAATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATGATTGCTTAGTGCCTCAACCTTTTGACATACTTGTTTAATAT  245

seq1  AGCTCTCAGCTTCTCATCCCTGCCACTGTCGCTCTGCATCAGCGAGGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAGCTTCTCATCCCTGCCACTGTCGCTCTGCATCAGCGAGGGAG  295

seq1  GCACAGCCAGAGTGGATGGGGCTCCTTCCCACATCCCACTGAAAGGCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCAGAGTGGATGGGGCTCCTTCCCACATCCCACTGAAAGGCACT  345

seq1  GACAACCAAATTGTACAAAGTGTGGGGTACAGACTAGACTAGAATTCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAAATTGTACAAAGTGTGGGGTACAGACTAGACTAGAATTCAAG  395

seq1  TTATCAGGGCACAGGGGAGCCCCTTGTACTAGTGCTCCCATGGGGCTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGGCACAGGGGAGCCCCTTGTACTAGTGCTCCCATGGGGCTTCC  445

seq1  CAGCCCAGTCCCCATCCCTGGTGTGGGGTGTGCTGTTGCCGCCTGTCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGTCCCCATCCCTGGTGTGGGGTGTGCTGTTGCCGCCTGTCTTT  495

seq1  GATCTGACAGCCTCTGAGTTTTCTCAGCCGCTTGCATGGCATGCCTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACAGCCTCTGAGTTTTCTCAGCCGCTTGCATGGCATGCCTTTTT  545

seq1  TTTAATGCAAAAGCCAAGTGAGAAAAATAAGTTTGAAGCGAAAACAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCAAAAGCCAAGTGAGAAAAATAAGTTTGAAGCGAAAACAAATT  595

seq1  GTCCCAGGCTGCGGGGCTGTTTCTGTCAATATTTTGGTCTCTTGTTTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGCTGCGGGGCTGTTTCTGTCAATATTTTGGTCTCTTGTTTAAT  645

seq1  TATTTATTTTTTTAATGTTTGTGCAGTTGTCTCTGTGTCTTTTTGTTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTTTAATGTTTGTGCAGTTGTCTCTGTGTCTTTTTGTTTTG  695

seq1  AGCCTGTATCAATATTTTCCATTTTAGAGGGCAGGTTCCTGGAGAGACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATCAATATTTTCCATTTTAGAGGGCAGGTTCCTGGAGAGACAG  745

seq1  AATTGTGTCTGTGTTTCTCTTCCAGATCTCCACAAAACACCCAAACGATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTCTGTGTTTCTCTTCCAGATCTCCACAAAACACCCAAACGATG  795

seq1  TGGTCACTTTGCAGAGTTTGTTTCTGATGAGAAATTTTCTCTTCCCAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTTTGCAGAGTTTGTTTCTGATGAGAAATTTTCTCTTCCCAGCC  845

seq1  ACCCACCCTTCCAGTCTTTGATTCTTTTAATAAAAACAAAAAGATCTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCTTCCAGTCTTTGATTCTTTTAATAAAAACAAAAAGATCTCTT  895

seq1  TAGCTCTAGGAAGTATTTGTTTGTCTTTGAAAAACGCTGCAGAGATTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGGAAGTATTTGTTTGTCTTTGAAAAACGCTGCAGAGATTCTA  945

seq1  ACAAGAAAGGGAAGCCACCAAGACTGTGGAGGAGGAGAGAGATTACAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAGGGAAGCCACCAAGACTGTGGAGGAGGAGAGAGATTACAGGA  995

seq1  CCCTTTGAGCTTGAGACATCTCCTGTGAGGGAGACCATGGCCTCGGGGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAGCTTGAGACATCTCCTGTGAGGGAGACCATGGCCTCGGGGTG  1045

seq1  CAGGAGAACAGAATTC  1062
      ||||||||||||||||
seq2  CAGGAGAACAGAATTC  1061