BAC Information

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BAC

Clone NameB6Ng01-086K08
Chromosome18 (Build37)
Map Location 57,908,704 - 58,087,007
singlet/doubletdoublet
Overlap geneSlc12a2, 9330166H04Rik
Upstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K08.bB6Ng01-086K08.g
ACCDH899987DH899988
length6341,179
definitionDH899987|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K08, 5' end.DH899988|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,086,374 - 58,087,007)(57,908,704 - 57,909,909)
sequence
gaattcagtgattgtgacaacgtgcacaagctacagcaagacaaaatccc
aagacagaggatttggtagtgtctgggagaatgagtcaggttttttaatg
ccgcctctagtagactgaacacactagctgggcaaaaaaaaaaaaaaaaa
ggagtcaattagaaaaggggtggggggtaaatctcaaaattggatgggaa
aggctggtagaaaggaaagagttgaaggggatgaatatgttccaaagcac
tgaaattatcaaaaaactaataaagatataatgaaaaaggcaagggtaac
aaacgattttgcacacacagaagctgttttgtagatctgtttgcacatgt
acatttgtgtaagtattgtacatatctgtccgtgctctgtgtaaaagaga
catcggtattttgttaataggtcctcattttaaaacccagacagttcatg
gggtcattcatttttctgcacctattaagaaaacacatggagggagccat
ggctccagcagcatatgtagcagagggatggccttatctggcatcaatgg
gaggagaggtccttggtcctactcgatgccccaagtaggggaaggccagg
gtggagaggcagaggtagatgggtgggtgggaga
gaattctaggccagcgagggtaatgatgaagatgcattgcctggcttata
gatggatatcttttcgtgtcttcatcagctgaagaagaaattttatctta
aaaaaaaaactccaaccctgctctccctttccttataaggctacaatcct
gttggtttacagcgtaacctttattacttcatttaacctcagtcaccccc
taaaggccctatgtccagatgcagttatgcataaggtgagagttcctaca
tgtgaattttggagagacttcgtgttgtccaaattcccaggcatcagtga
cctgtcagtagccaatactcatagccactgagacatgagcccagatgcca
aagcgtgctagactgttacaaatgtgatagctgctgctttcttctttgta
tctgtcactctttcggtttgactttgcaaacttttcctctgtcgtataag
gactagctttatgaactattttgaccagcaaaatatactggaaataccaa
ttccaatctcagagttaaagaggccttaggcgtttccattattagaaact
ggtgccatcacatgaatatgcctgggttagcctatgagacaatgacagac
attacctcaggcaccagccaaccaccagacacatgaacagagagtaacgg
gcttctcagactgagcgcggacataagtgagtccagctgagcttggtaaa
gcccgacccgatgtcagtctggtagagctggaagcaagaacactatactt
aaagtgcaacaagagcttgttaaacagaatagatcatggagttatccaat
aaagggagcctacaaaaatagggagaagtttagggtttaagaactagttc
ttctccggtttttaatttgtatgacttggcaaataaccttcctgaagcac
gttcctcgtgcgccaaatgaagattatgttctaagccataaaggaaactg
ccaaagcgcttaagtgaaatcgtgggaaagttcaggaaattaaaaagaaa
agaaaatagctatgtaaactcgagtgacttcaggggattatctagacagc
agagacctagtctaatgttccaagcttccagtaaatctctatggtttaag
aaatagtcaactgaagtttgtagtcggtttctattgaataaaaaaaggtg
ccagttctcagtctatggtagaaattcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58086374_58087007
seq2: B6Ng01-086K08.b_43_676 (reverse)

seq1  TCTCCCACCCACCCATCTACCTCTGCCTCTCCACCCTGGCCTTCCCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACCCACCCATCTACCTCTGCCTCTCCACCCTGGCCTTCCCCTAC  50

seq1  TTGGGGCATCGAGTAGGACCAAGGACCTCTCCTCCCATTGATGCCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCATCGAGTAGGACCAAGGACCTCTCCTCCCATTGATGCCAGATA  100

seq1  AGGCCATCCCTCTGCTACATATGCTGCTGGAGCCATGGCTCCCTCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCCCTCTGCTACATATGCTGCTGGAGCCATGGCTCCCTCCATGT  150

seq1  GTTTTCTTAATAGGTGCAGAAAAATGAATGACCCCATGAACTGTCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTAATAGGTGCAGAAAAATGAATGACCCCATGAACTGTCTGGGT  200

seq1  TTTAAAATGAGGACCTATTAACAAAATACCGATGTCTCTTTTACACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAGGACCTATTAACAAAATACCGATGTCTCTTTTACACAGAG  250

seq1  CACGGACAGATATGTACAATACTTACACAAATGTACATGTGCAAACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGACAGATATGTACAATACTTACACAAATGTACATGTGCAAACAGAT  300

seq1  CTACAAAACAGCTTCTGTGTGTGCAAAATCGTTTGTTACCCTTGCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAACAGCTTCTGTGTGTGCAAAATCGTTTGTTACCCTTGCCTTTT  350

seq1  TCATTATATCTTTATTAGTTTTTTGATAATTTCAGTGCTTTGGAACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATATCTTTATTAGTTTTTTGATAATTTCAGTGCTTTGGAACATAT  400

seq1  TCATCCCCTTCAACTCTTTCCTTTCTACCAGCCTTTCCCATCCAATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTTCAACTCTTTCCTTTCTACCAGCCTTTCCCATCCAATTTTG  450

seq1  AGATTTACCCCCCACCCCTTTTCTAATTGACTCCTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACCCCCCACCCCTTTTCTAATTGACTCCTTTTTTTTTTTTTTTT  500

seq1  TGCCCAGCTAGTGTGTTCAGTCTACTAGAGGCGGCATTAAAAAACCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTAGTGTGTTCAGTCTACTAGAGGCGGCATTAAAAAACCTGAC  550

seq1  TCATTCTCCCAGACACTACCAAATCCTCTGTCTTGGGATTTTGTCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCCCAGACACTACCAAATCCTCTGTCTTGGGATTTTGTCTTGCT  600

seq1  GTAGCTTGTGCACGTTGTCACAATCACTGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGTGCACGTTGTCACAATCACTGAATTC  634

seq1: chr18_57908704_57909909
seq2: B6Ng01-086K08.g_67_1245

seq1  GAATTCTAGGCCAGCGAGGGTAATGATGAAGATGCATTGCCTGGCTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCGAGGGTAATGATGAAGATGCATTGCCTGGCTTATA  50

seq1  GATGGATATCTTTTCGTGTCTTCATCAGCTGAAGAAGAAATTTTATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATATCTTTTCGTGTCTTCATCAGCTGAAGAAGAAATTTTATCTTA  100

seq1  AAAAAAAAACTCCAACCCTGCTCTCCCTTTCCTTATAAGGCTACAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACTCCAACCCTGCTCTCCCTTTCCTTATAAGGCTACAATCCT  150

seq1  GTTGGTTTACAGCGTAACCTTTATTACTTCATTTAACCTCAGTCACCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTACAGCGTAACCTTTATTACTTCATTTAACCTCAGTCACCCCC  200

seq1  TAAAGGCCCTATGTCCAGATGCAGTTATGCATAAGGTGAGAGTTCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCCTATGTCCAGATGCAGTTATGCATAAGGTGAGAGTTCCTACA  250

seq1  TGTGAATTTTGGAGAGACTTCGTGTTGTCCAAATTCCCAGGCATCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTTGGAGAGACTTCGTGTTGTCCAAATTCCCAGGCATCAGTGA  300

seq1  CCTGTCAGTAGCCAATACTCATAGCCACTGAGACATGAGCCCAGATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGTAGCCAATACTCATAGCCACTGAGACATGAGCCCAGATGCCA  350

seq1  AAGCGTGCTAGACTGTTACAAATGTGATAGCTGCTGCTTTCTTCTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGCTAGACTGTTACAAATGTGATAGCTGCTGCTTTCTTCTTTGTA  400

seq1  TCTGTCACTCTTTCGGTTTGACTTTGCAAACTTTTCCTCTGTCGTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTCTTTCGGTTTGACTTTGCAAACTTTTCCTCTGTCGTATAAG  450

seq1  GACTAGCTTTATGAACTATTTTGACCAGCAAAATATACTGGAAATACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCTTTATGAACTATTTTGACCAGCAAAATATACTGGAAATACCAA  500

seq1  TTCCAATCTCAGAGTTAAAGAGGCCTTAGGCGTTTCCATTATTAGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATCTCAGAGTTAAAGAGGCCTTAGGCGTTTCCATTATTAGAAACT  550

seq1  GGTGCCATCACATGAATATGCCTGGGTTAGCCTATGAGACAATGACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATCACATGAATATGCCTGGGTTAGCCTATGAGACAATGACAGAC  600

seq1  ATTACCTCAGGCACCAGCCAACCACCAGACACATGAACAGAGAGTAACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCAGGCACCAGCCAACCACCAGACACATGAACAGAGAGTAACGG  650

seq1  GCTTCTCAGACTGAGCGCGGACATAAGTGAGTCCAGCTGAGCTTGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGACTGAGCGCGGACATAAGTGAGTCCAGCTGAGCTTGGTAAA  700

seq1  GCCCGACCCGATGTCAGTCTGGTAGAGCTGGAAGCAAGAACACTATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGACCCGATGTCAGTCTGGTAGAGCTGGAAGCAAGAACACTATACTT  750

seq1  AAAGTGCAACAAGAGCTTGTTAAACAGAATAGATCATGGAGTTATCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAACAAGAGCTTGTTAAACAGAATAGATCATGGAGTTATCCAAT  800

seq1  AAAGGGAGCCTACAAAAATAGGGAGAAGTTTAGGGTTTAAGAACTAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGCCTACAAAAATAGGGAGAAGTTTAGGGTTTAAGAACTAGTTC  850

seq1  TTCTCCGGTTTTTAATTTGTATGACTTGGCAAATAACCTTCCTGAAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGGTTTTTAATTTGTATGACTTGGCAAATAACCTTCCTGAAGCAC  900

seq1  GTTCCTCGTGCGCCAAATGAAGATTATGTTCTAAGCCATAAAGGAAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCGTGCGCCAAATGAAGATTATGTTCTAAGCCATAAAGGAAACTG  950

seq1  CCAAAGCGCTTAAGTGAAAATCGGTGGGAAAGTTCAAGGAAATTAAAAAG  1000
      |||||||||||||||| ||||| |||||||||||| ||||||||||||||
seq2  CCAAAGCGCTTAAGTG-AAATC-GTGGGAAAGTTC-AGGAAATTAAAAAG  997

seq1  AAAAAGAAAATAGCTATGTAAACTCGAGTGACTTCAGGGGATTAATCTAG  1050
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -AAAAGAAAATAGCTATGTAAACTCGAGTGACTTCAGGGGATT-ATCTAG  1045

seq1  ACAGCAGGAGACCTAGTCTAAATGTTCCAAGCTTCCCAAGTTAAATCTCT  1100
      |||||| |||||||||||| ||||||||||||||||  || |||||||||
seq2  ACAGCA-GAGACCTAGTCT-AATGTTCCAAGCTTCC--AG-TAAATCTCT  1090

seq1  ATGGGTTTAAGAAATAGGTTCAAACTTGAAGTTTTGTAGTTCGGTTTTCT  1150
      || ||||||||||||||  ||||   ||||| ||||||| |||| |||||
seq2  AT-GGTTTAAGAAATAG--TCAA--CTGAAG-TTTGTAG-TCGG-TTTCT  1132

seq1  AATGAATAAAATAAAGGTGGCCCCCAAGTTCTCAGTCCTATGGTAAGAAA  1200
      | ||||||||| |||||||     | |||||||||| ||||||| |||||
seq2  ATTGAATAAAA-AAAGGTG-----CCAGTTCTCAGT-CTATGGT-AGAAA  1174

seq1  TATCTA  1206
      | ||||
seq2  T-TCTA  1179