BAC Information

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BAC

Clone NameB6Ng01-086P24
Chromosome18 (Build37)
Map Location 86,425,215 - 86,594,909
singlet/doubletdoublet
Overlap geneNeto1
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402
Downstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P24.bB6Ng01-086P24.g
ACCDH900250DH900251
length1,1111,154
definitionDH900250|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P24, 5' end.DH900251|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,425,215 - 86,426,339)(86,593,714 - 86,594,909)
sequence
gaattctaatccaggcattgcctacatcaaacaggccagtaggaaaccta
tcagggaatattttcacgattaatgattaacatgagaagtccactatgtt
tggtaccacccctgggaaggtttgggaccctgagttgtataagaagtcaa
actgggtaattcctggagaacaagtcagtaagaggaatttgctccatggc
tcctgtctctgctcttatttgatttcctgtcttgatatccctcaatgatg
gaccctaatcagatgtgtaactcaattaaacttcttcctccccaggttcc
ttctgttcatgatgtttaacagcagtggaaggaaaactagcacaattctt
aggatcaaagagtgttctaaaaccatttttaaaataacatttattttaaa
gcaaataaggtaaccctcagcctcatagtgagccttttggagatatctat
gttatatttgtaagtcactttatgattattggttcttatctattatttta
tttccagattactgagatcctacttttgtacatatgctaaagaactgttt
aaaagaataagttatactgtaatacactaaacatacatacatacatacat
acatacatacatacatacatatatacatacataggtacatacatagttga
gaataaaacagaacttcaaccctgattttcaaataagtaaaatatacatt
atacagtttttcttggggataaatttataatgattcaatctgaagattat
cattatttgtctccaaattcttttagtaatattcttagccttagatccat
ggaaaacaagcgttgcaagagacatattcaccatgacctactttctttaa
ctgctccttgtaggcctaaacttctgttatttttttttaagatttgtttc
ttcttatcacttcctcctagtcaagtctcactttctctgcacatcacaac
tgttgccacagctgttacaaaatccttgaatctgactatattaaacactg
gggaattatttaaaaaatcatgagtgcattttttcatgtgcctctagcta
agagtatactaaataaactagagatggaaggcactgtggagcaaggtgta
ctgcaatatat
gaattctatttcctcatataaattccatgattttgttaacagttcatcaa
aaattctgacttttgatctctacacaatatatacaatatagtaaaagata
atgtatctaatttaataaaattgttattactcagatgatgatattagagt
aattgaaaatgtgtgttttgatgtattgatatttggtccttcaacaactt
ccaaatttgttttagaatgtagaggtaatattatcgtctacatttatctc
tcagtaaaacttgggtaggggtctatgtgaggagaaagttcatgcagtga
agcagaatatgagtttgtatgatcagaatgtatatgcaaaattcaatgca
gccgtgtatgtctatcaacagggcaagggaagctaggaacattcattggc
tgactagccaggcagtctagccaaattgatgagctccacatcgagttctc
atgcttgcacgcacgcacacacacacacacacacacacacacacacacac
acacacacacttccacatattaattaactgaattagttattctaaaatat
gttgactatatagttattcacactcgataataacaagaaaatatagtaca
gtccctaggctgataagctcatgaaattttggaaaaaagtaagcaataac
atgataacaatggacatgaaatatgaaaggattaaaggtaaatattacat
gaagaaggtggcagtgagggtgtcctgaaagagatgagtcttcatgtgag
ttttatggaaagagctggcattttctaggtagaagattatgaaaactttc
taaatacagtaaattgaatgtctagggaataaatcgtttttgccttatgc
acttttgggccaacccaagccctgcactagattaaaagtttgtagggtac
tacatcatccaaagagggagatgatggagaagaaatgtggttattgaaat
gctttttcatgtacccataagagctgatttgcactgaaggtgaagaaatc
aattaagaaatttagactctgacatatgtattttcacctagaatggtcac
atgaagacctatcctctaggaccgtttatctaacaatctcttcactgata
ttattctttgctttggactattaacccatggcagtgatcttgtcattaac
caat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86425215_86426339
seq2: B6Ng01-086P24.b_50_1160

seq1  GAATTCTAATCCAGGCATTGCCTACATCAAACAGGCCAGTAGGAAACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCCAGGCATTGCCTACATCAAACAGGCCAGTAGGAAACCTA  50

seq1  TCAGGGAATATTTTCACGATTAATGATTAACATGAGAAGTCCACTATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAATATTTTCACGATTAATGATTAACATGAGAAGTCCACTATGTT  100

seq1  TGGTACCACCCCTGGGAAGGTTTGGGACCCTGAGTTGTATAAGAAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCACCCCTGGGAAGGTTTGGGACCCTGAGTTGTATAAGAAGTCAA  150

seq1  ACTGGGTAATTCCTGGAGAACAAGTCAGTAAGAGGAATTTGCTCCATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAATTCCTGGAGAACAAGTCAGTAAGAGGAATTTGCTCCATGGC  200

seq1  TCCTGTCTCTGCTCTTATTTGATTTCCTGTCTTGATATCCCTCAATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCTGCTCTTATTTGATTTCCTGTCTTGATATCCCTCAATGATG  250

seq1  GACCCTAATCAGATGTGTAACTCAATTAAACTTCTTCCTCCCCAGGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAATCAGATGTGTAACTCAATTAAACTTCTTCCTCCCCAGGTTCC  300

seq1  TTCTGTTCATGATGTTTAACAGCAGTGGAAGGAAAACTAGCACAATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCATGATGTTTAACAGCAGTGGAAGGAAAACTAGCACAATTCTT  350

seq1  AGGATCAAAGAGTGTTCTAAAACCATTTTTAAAATAACATTTATTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAGAGTGTTCTAAAACCATTTTTAAAATAACATTTATTTTAAA  400

seq1  GCAAATAAGGTAACCCTCAGCCTCATAGTGAGCCTTTTGGAGATATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAGGTAACCCTCAGCCTCATAGTGAGCCTTTTGGAGATATCTAT  450

seq1  GTTATATTTGTAAGTCACTTTATGATTATTGGTTCTTATCTATTATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTGTAAGTCACTTTATGATTATTGGTTCTTATCTATTATTTTA  500

seq1  TTTCCAGATTACTGAGATCCTACTTTTGTACATATGCTAAAGAACTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATTACTGAGATCCTACTTTTGTACATATGCTAAAGAACTGTTT  550

seq1  AAAAGAATAAGTTATACTGTAATACACTAAACATACATACATACATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAAGTTATACTGTAATACACTAAACATACATACATACATACAT  600

seq1  ACATACATACATACATACATATATACATACATAGGTACATACATAGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATACATATATACATACATAGGTACATACATAGTTGA  650

seq1  GAATAAAACAGAACTTCAACCCTGATTTTCAAATAAGTAAAATATACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACAGAACTTCAACCCTGATTTTCAAATAAGTAAAATATACATT  700

seq1  ATACAGTTTTTCTTGGGGATAAATTTATAATGATTCAATCTGAAGATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTTTCTTGGGGATAAATTTATAATGATTCAATCTGAAGATTAT  750

seq1  CATTATTTGTCTCCAAATTCTTTTAGTAATATTCTTAGCCTTAGATCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGTCTCCAAATTCTTTTAGTAATATTCTTAGCCTTAGATCCAT  800

seq1  GGAAAACAAGCGTTGCAAGAGACATATTCACCATGACCTAC-TTCTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAAACAAGCGTTGCAAGAGACATATTCACCATGACCTACTTTCTTTAA  850

seq1  CTGCTCCTTGTAGGCCTAAACTTCTGTTATTTTTTTTTAAGATTTGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTTGTAGGCCTAAACTTCTGTTATTTTTTTTTAAGATTTGTTTC  900

seq1  TTCTTATCACTTCCTCCTAGTCAAGTCTCACTTTCTCTGCACATCACAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCACTTCCTCCTAGTCAAGTCTCACTTTCTCTGCACATCACAAC  950

seq1  TGTTGCCACAGCTGTTACAAAATCCTTGAATCTGACTATATTAAACACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCACAGCTGTTACAAAATCCTTGAATCTGACTATATTAAACACTG  1000

seq1  GGGAATTATTTAAAAAATCATGAAGTGCATTTTTTCAATGTTGCTTCCTA  1049
      |||||||||||||||||||||| ||||||||||||| ||||  ||  |||
seq2  GGGAATTATTTAAAAAATCATG-AGTGCATTTTTTC-ATGTGCCT--CTA  1046

seq1  GGCCTACAGAAGTATACTAAATAACACTAGAGATTGAAAAGGGGCACTGT  1099
      |  ||| || |||||||||||||| ||||||||| |||    ||||||||
seq2  G--CTA-AG-AGTATACTAAATAA-ACTAGAGATGGAA----GGCACTGT  1087

seq1  GAAGCAAGGTGTGTACTGCAATATAT  1125
      | ||||||  ||||||||||||||||
seq2  GGAGCAAG--GTGTACTGCAATATAT  1111

seq1: chr18_86593714_86594909
seq2: B6Ng01-086P24.g_70_1223 (reverse)

seq1  ATTGGTTAATGAAATCATAAAATTTGGAGCACTTACCTGAAACATAGTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGGCTAATGGACAGATCACTG-CATGGGTCTAAAATAAGTAC-AAGA  98
       | ||| |||||   ||||||||| ||||||| |||    ||| | ||| 
seq2  -ATTGGTTAATGACAAGATCACTGCCATGGGT-TAA---TAGTCCAAAGC  45

seq1  AAAG-ATATATTCAGTGAAGGAGA-TGGTAGAT-AACGGTCTTGGGAGGG  145
      |||| |||   |||||||| |||| || ||||| ||||||| | |   ||
seq2  AAAGAATAATATCAGTGAA-GAGATTGTTAGATAAACGGTCCTAG--AGG  92

seq1  ATGGGTCTTCATGTGACCA-TCTAGGTGAAAATACATATGTCAGAGTCTA  194
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAGGTCTTCATGTGACCATTCTAGGTGAAAATACATATGTCAGAGTCTA  142

seq1  AATTTCTTTATTGATTTCTTCACCTTCAGTGCAAATCAGCTCTTTATGGG  244
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AATTTCTTAATTGATTTCTTCACCTTCAGTGCAAATCAGCTC-TTATGGG  191

seq1  TACATG-AAAAGCATTTC-ATAACCACATTTCTTCTCCATCATCT-CCTC  291
      |||||| ||||||||||| |||||||||||||||||||||||||| ||||
seq2  TACATGAAAAAGCATTTCAATAACCACATTTCTTCTCCATCATCTCCCTC  241

seq1  TTTGGATGATGTAGTA-CCTAC-AACTTTT-ATCTAGTGCA-GGCTT-GG  336
      |||||||||||||||| ||||| ||||||| |||||||||| ||||| ||
seq2  TTTGGATGATGTAGTACCCTACAAACTTTTAATCTAGTGCAGGGCTTGGG  291

seq1  TTGGCCC-AAAGTGCATAAGGC-AAAACGATTTATTCCCTAGACATTCAA  384
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TTGGCCCAAAAGTGCATAAGGCAAAAACGATTTATTCCCTAGACATTCAA  341

seq1  TTTACTGTATTTAGAAAGTTTTCATAATCTTCTACCTAGAAAATGCCAGC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTATTTAGAAAGTTTTCATAATCTTCTACCTAGAAAATGCCAGC  391

seq1  TCTTTCCATAAAACTCACATGAAGACTCATCTCTTTCAGGACACCCTCAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATAAAACTCACATGAAGACTCATCTCTTTCAGGACACCCTCAC  441

seq1  TGCCACCTTCTTCATGTAATATTTACCTTTAATCCTTTCATATTTCATGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTCTTCATGTAATATTTACCTTTAATCCTTTCATATTTCATGT  491

seq1  CCATTGTTATCATGTTATTGCTTACTTTTTTCC-AAATTTCATGAGCTTA  583
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTGTTATCATGTTATTGCTTACTTTTTTCCAAAATTTCATGAGCTTA  541

seq1  TCAGCCTAGGGACTGTACTATATTTTCTTGTTATTATCGAGTGTGAATAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTAGGGACTGTACTATATTTTCTTGTTATTATCGAGTGTGAATAA  591

seq1  CTATATAGTCAACATATTTTAGAATAACTAATTCAGTTAATTAATATGTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGTCAACATATTTTAGAATAACTAATTCAGTTAATTAATATGTG  641

seq1  GAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG  691

seq1  TGCGTGCAAGCATGAGAACTCGATGTGGAGCTCATCAATTTGGCTAGACT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCAAGCATGAGAACTCGATGTGGAGCTCATCAATTTGGCTAGACT  741

seq1  GCCTGGCTAGTCAGCCAATGAATGTTCCTAGCTTCCCTTGCCCTGTTGAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTAGTCAGCCAATGAATGTTCCTAGCTTCCCTTGCCCTGTTGAT  791

seq1  AGACATACACGGCTGCATTGAATTTTGCATATACATTCTGATCATACAAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACACGGCTGCATTGAATTTTGCATATACATTCTGATCATACAAA  841

seq1  CTCATATTCTGCTTCACTGCATGAACTTTCTCCTCACATAGACCCCTACC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTCTGCTTCACTGCATGAACTTTCTCCTCACATAGACCCCTACC  891

seq1  CAAGTTTTACTGAGAGATAAATGTAGACGATAATATTACCTCTACATTCT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTACTGAGAGATAAATGTAGACGATAATATTACCTCTACATTCT  941

seq1  AAAACAAATTTGGAAGTTGTTGAAGGACCAAATATCAATACATCAAAACA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATTTGGAAGTTGTTGAAGGACCAAATATCAATACATCAAAACA  991

seq1  CACATTTTCAATTACTCTAATATCATCATCTGAGTAATAACAATTTTATT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCAATTACTCTAATATCATCATCTGAGTAATAACAATTTTATT  1041

seq1  AAATTAGATACATTATCTTTTACTATATTGTATATATTGTGTAGAGATCA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATACATTATCTTTTACTATATTGTATATATTGTGTAGAGATCA  1091

seq1  AAAGTCAGAATTTTTGATGAACTGTTAACAAAATCATGGAATTTATATGA  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGAATTTTTGATGAACTGTTAACAAAATCATGGAATTTATATGA  1141

seq1  GGAAATAGAATTC  1196
      |||||||||||||
seq2  GGAAATAGAATTC  1154