BAC Information

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BAC

Clone NameB6Ng01-087L17
Chromosome18 (Build37)
Map Location 60,979,821 - 61,130,285
singlet/doubletdoublet
Overlap geneTcof1, LOC100042699, Arsi, Camk2a
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74
Downstream geneSlc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L17.bB6Ng01-087L17.g
ACCDH900776DH900777
length1,144487
definitionDH900776|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L17, 5' end.DH900777|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,979,821 - 60,980,987)(61,129,794 - 61,130,285)
sequence
gaattcattacctctggaagagcaggcggtgctcttaaccactgagccat
ctctccagccccctgcttactggctttttaagaatgagctttcaacacca
gtgggagagacccagggtccctctgttatccactgatggtacgaggaggc
cctgagacccatagattctcagaacagcatctgtgctaccctgagccaga
aatgactggcatgggtaaagaggcagggatgttcaagcaagaaaagccct
gaggccaaggtggagaatagaggagccatcgcagctggaaagatgggtac
caggtggtgagctatggctttgctctctaatctgggcccaggggaggaca
gcgcagccccaactccagtggccatcacctgtgtctcctctgggatgtgt
ccctggctaggtggtccctcagggcacccctgcttcccatcctgctagaa
gtcaggaagagcacacagacaatagatgagcctttgctaagcctcctgga
gctgcagacacaaagcagtccaggtatggcctgacccccttgctacttta
tcttacccgccctatgtcaatcacctagggctctagtacctctgggttcc
cttcctgcagggcaggctctgctcatgttcccagagaagccttccctgcc
cgccttttctaaagcaggtcacccattattctctgttctgtgctgttccc
tttgcaacacctagcagttggtgacaactaatttatgctgctttttctgt
gtaatggctgtgtctctgctggcttaggactccgtgaaggtctcgtgcct
gctgcagcctcggtgcccagcagggcagatgctcaggccatctcactacc
cactggatcacccggccgccagaggctctttttgggctagtctgtgatgc
accgggtaacagggtggcacagtagctccccgaagctgggaggggcttca
gtacagccttctctctgcccttaggtgtgggtgtccgatagactcttccc
tcacgttaacaacccattaggctcagagcaagatcttggagctggaggac
ccaggttctgctggacacctgggtggggatgaacctgttttattagacct
tgtcactatctgcctgaattaaattgcactggactgtgaggctg
acgggcatgctcctgtgactgaacttcctggatttttgtactctattctg
ttattcttttttgttttgttttgttttgggagggggtgtttttgtttttg
ttttcaagacaaggtttctctgtatagccctggctgtcctggaactcact
ttgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcc
cgagtgctgggattaaaggcgtgcgacaccacgcccggctctatccagtt
attcttactgattcatgttttttaaaatgatgtcattaagagacaaaaac
aacaaccacaacctaaaatgacttatctcaaatggaaaatatatgttatt
actgtgcatctaatgcttaaatatgttaatgtcctctgattagacagagt
gaagtgaaataaacccataagctaacgttaagagagagttccttctgtct
acccacagtcccgggcagtgtctggggaatgccacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60979821_60980987
seq2: B6Ng01-087L17.b_48_1191

seq1  GAATTCATTACCTCTGGAAGAGCAGGCGGTGCTCTTAACCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTCTGGAAGAGCAGGCGGTGCTCTTAACCACTGAGCCAT  50

seq1  CTCTCCAGCCCCCTGCTTACTGGCTTTTTAAGAATGAGCTTTCAACACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCCTGCTTACTGGCTTTTTAAGAATGAGCTTTCAACACCA  100

seq1  GTGGGAGAGACCCAGGGTCCCTCTGTTATCCACTGATGGTACGAGGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAGACCCAGGGTCCCTCTGTTATCCACTGATGGTACGAGGAGGC  150

seq1  CCTGAGACCCATAGATTCTCAGAACAGCATCTGTGCTACCCTGAGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACCCATAGATTCTCAGAACAGCATCTGTGCTACCCTGAGCCAGA  200

seq1  AATGACTGGCATGGGTAAAGAGGCAGGGATGTTCAAGCAAGAAAAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGGCATGGGTAAAGAGGCAGGGATGTTCAAGCAAGAAAAGCCCT  250

seq1  GAGGCCAAGGTGGAGAATAGAGGAGCCATCGCAGCTGGAAAGATGGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAAGGTGGAGAATAGAGGAGCCATCGCAGCTGGAAAGATGGGTAC  300

seq1  CAGGTGGTGAGCTATGGCTTTGCTCTCTAATCTGGGCCCAGGGGAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGAGCTATGGCTTTGCTCTCTAATCTGGGCCCAGGGGAGGACA  350

seq1  GCGCAGCCCCAACTCCAGTGGCCATCACCTGTGTCTCCTCTGGGATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGCCCCAACTCCAGTGGCCATCACCTGTGTCTCCTCTGGGATGTGT  400

seq1  CCCTGGCTAGGTGGTCCCTCAGGGCACCCCTGCTTCCCATCCTGCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTAGGTGGTCCCTCAGGGCACCCCTGCTTCCCATCCTGCTAGAA  450

seq1  GTCAGGAAGAGCACACAGACAATAGATGAGCCTTTGCTAAGCCTCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGAGCACACAGACAATAGATGAGCCTTTGCTAAGCCTCCTGGA  500

seq1  GCTGCAGACACAAAGCAGTCCAGGTATGGCCTGACCCCCTTGCTACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGACACAAAGCAGTCCAGGTATGGCCTGACCCCCTTGCTACTTTA  550

seq1  TCTTACCCGCCCTATGTCAATCACCTAGGGCTCTAGTACCTCTGGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCGCCCTATGTCAATCACCTAGGGCTCTAGTACCTCTGGGTTCC  600

seq1  CTTCCTGCAGGGCAGGCTCTGCTCATGTTCCCAGAGAAGCCTTCCCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAGGGCAGGCTCTGCTCATGTTCCCAGAGAAGCCTTCCCTGCC  650

seq1  CGCCTTTTCTAAAGCAGGTCACCCATTATTCTCTGTTCTGTGCTGTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTTCTAAAGCAGGTCACCCATTATTCTCTGTTCTGTGCTGTTCCC  700

seq1  TTTGCAACACCTAGCAGTTGGTGACAACTAATTTATGCTGCTTTTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACACCTAGCAGTTGGTGACAACTAATTTATGCTGCTTTTTCTGT  750

seq1  GTAATGGCTGTGTCTCTGCTGGCTTAGGACTCCGTGAAGGTCTCGTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGCTGTGTCTCTGCTGGCTTAGGACTCCGTGAAGGTCTCGTGCCT  800

seq1  GCTGCAGCCTCGGTGCCCAGCAGGGCAGATGCTCAGGCCATCTCACTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCTCGGTGCCCAGCAGGGCAGATGCTCAGGCCATCTCACTACC  850

seq1  CACTGGATCACCCGGCCGCCAGAGGCTCTTTTTGGGCTAGTCTGTGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATCACCCGGCCGCCAGAGGCTCTTTTTGGGCTAGTCTGTGATGC  900

seq1  ACCGGGTAACAGGGTGGCACAGTAGCTCCCCGAAGCTGGGAGGGGCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTAACAGGGTGGCACAGTAGCTCCCCGAAGCTGGGAGGGGCTTCA  950

seq1  GTACAGCCTTCTTCTCCTGCCCCTTAGGGTGTTGGGTGTCCGATAGACTC  1000
      ||||||||||| ||| ||| |||||| |||| ||||||||||||||||||
seq2  GTACAGCCTTC-TCT-CTG-CCCTTA-GGTG-TGGGTGTCCGATAGACTC  995

seq1  TTCCCTCACGTTAACAAACCCCATTAGGCCTCCAGAGCAAAGATCTTGGA  1050
      |||||||||||||||||  ||||||||||   |||||| |||||||||||
seq2  TTCCCTCACGTTAACAA--CCCATTAGGC--TCAGAGC-AAGATCTTGGA  1040

seq1  GCTGGAGGACCCAGGTTCTGGCCTGGACCAACCCTGGT-GGGATGAGCCC  1099
      ||||||||||||||||||||  ||||||  |||  ||| |||||||  ||
seq2  GCTGGAGGACCCAGGTTCTG--CTGGAC--ACCTGGGTGGGGATGA-ACC  1085

seq1  TGTTTTATTTAGACATTGTCCACTAATCTTGCCCTAGATATTAATAATGC  1149
      ||||||| |||||| |||| |||| ||| ||||  |   ||||| | |||
seq2  TGTTTTA-TTAGACCTTGT-CACT-ATC-TGCCTGA---ATTAA-ATTGC  1127

seq1  ACTGGACTGTGAAGGCTG  1167
      ||||||||||| ||||||
seq2  ACTGGACTGTG-AGGCTG  1144

seq1: chr18_61129794_61130285
seq2: B6Ng01-087L17.g_68_560 (reverse)

seq1  GCGTGGC-TTCCCCAGACACTGCCCGGGACTGTGGGTAGACAGAAGGAAC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCATTCCCCAGACACTGCCCGGGACTGTGGGTAGACAGAAGGAAC  50

seq1  TCTCTCTTAACGTTAGCTTATGGGTTTATTTCACTTCACTCTGTCTAATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTAACGTTAGCTTATGGGTTTATTTCACTTCACTCTGTCTAATC  100

seq1  AGAGGACATTAACATATTTAAGCATTAGATGCACAGTAATAACATATATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACATTAACATATTTAAGCATTAGATGCACAGTAATAACATATATT  150

seq1  TTCCATTTGAGATAAGTCATTTTAGGTTGTGGTTGTTGTTTTTGTCTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGAGATAAGTCATTTTAGGTTGTGGTTGTTGTTTTTGTCTCTT  200

seq1  AATGACATCATTTTAAAAAACATGAATCAGTAAGAATAACTGGATAGAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATCATTTTAAAAAACATGAATCAGTAAGAATAACTGGATAGAGC  250

seq1  CGGGCGTGGTGTCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGTGGTGTCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCA  300

seq1  GGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  350

seq1  ACAGCCAGGGCTATACAGAGAAACCTTGTCTTGAAAACAAAAACAAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTATACAGAGAAACCTTGTCTTGAAAACAAAAACAAAAAC  400

seq1  ACCCCCTCCCAAAACAAAACAAAACAAAAAAGAATAACAGAATAGAGTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCCCAAAACAAAACAAAACAAAAAAGAATAACAGAATAGAGTAC  450

seq1  AAAAATCCAGGAAGTTCAGTCACAGGAGCATGCCCGTGAATTC  492
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAGGAAGTTCAGTCACAGGAGCATGCCCGTGAATTC  493