BAC Information

Click to search

BAC

Clone NameB6Ng01-087P05
Chromosome18 (Build37)
Map Location 66,568,706 - 66,773,015
singlet/doubletdoublet
Overlap genePmaip1, LOC100042852
Upstream geneLOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P05.bB6Ng01-087P05.g
ACCDH900936DH900937
length1,190789
definitionDH900936|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P05, 5' end.DH900937|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,568,706 - 66,569,913)(66,772,227 - 66,773,015)
sequence
gaattccaaacctgccagggttacaagaaatcccatcaaacgaacaaaat
cctctccatgcctgaaatcaatgcaggcatgtcattaacgaagaataatg
aggtggaccaaaccgaaccaaggctcagtgttcaccctgccactgtctgt
ggcgtcatttttatgctccttcatcatagatcctttcacgtgtctgctat
atcaaacatccttttgcctgtgtctgctttgtaaaaacgttatttcctgt
gtctgctttagctagacatcctttcacctgtgtgccccagcaaaccatca
tttgacaaaactgactttccaaacaaaccagaagtttccacttcacatcg
tggctttgtttaaagtggtggtggtgcggggtgctttcgtttatgttcta
atttgagtgacgactgttttgcttcattttatttttgtgtgtctgtgctc
agtgcaaatgtgaatgggagcattcacatgtatgcacatatgtgttaaga
ccagagaggtcaacctctggtgtcattcctcagggctactgtgacacaca
ctttttaattgtggcagtcggaggaaagaggcaggcagatctttgtgaac
ttaaggacagcctggtgtactatatatctatatagtgtacgctacttaca
ctatacacacacacacacaattatctatccatctctatccatctatctat
gagctccaggacagccaggaatatctagagacaccctggagagacagaga
cagagacacagagagacagagagagaactgcagctgtaggagctagtccg
cctcgcctcctgtcttcacccaacagtctttgacaatgggtaatagcttt
gactctgtgatggcccaccgcatggaggagccagatcttctagtcagttc
ttcctttgggaacactgctgttttcttccacccaccttccttagaatagt
ctcccatgtacctctttcgagtgtgtgtgaaagtattctttacaggaccc
ccaatggtaggatgcccattcacactgtagatgtgtcactttgaaactta
ctttcatgtatctgtctggaagttgagccaaaaccaccctggcgtaaggc
agatgctcaagctcggttcctaccctcgtgacattacaatcgacaatata
aaactaaaccaaacaagacatcgctgggtgatggtgtaca
gaattcattgcaactttattccaacatgctgtctagatttacaaagagat
gtgagttttaagtagaatggaattgcttttagctgcacacgttcacgggt
aatagtatggtatttcaatatgtctatgttttctaatgatcagatcgggt
taatttgcatatctttcagacgcctctgagtatctagtagaaaagatcct
ttacccggaggcttctaaataagtgtgcagatgtgtttattgggacactc
atgagtcacccctccaccaggaaatcaaacaaagatggcgtacatgcgtg
attacaagatccttttcctcaggtcaggcagggctcactctgcacagctc
attttcttctgaacccacctcaccctgtgctccttacattatgtgtatta
ttatgtatatgtattattccttgctgcaattttactatagtgagcacgtt
cagaagactcaatcttagaacagctcaactctagtctttaaaattagccc
ccaattctctcagccaattatttcatattcagaacttccagaattttttt
aataaggacaaaataacaaatgcaaagcagaggtgatatataaaatattt
tatattttattagatattaggtgttttgatattttatattgcatgttata
tattgtatgttatatgctatatatttattatatgttatattttgtatgtt
atatgtttgtgattgtttgcacagctcatcccatggaatggcactattag
gagtggacctgttgggagttggtggtgtcctgtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_66568706_66569913
seq2: B6Ng01-087P05.b_49_1238

seq1  GAATTCCAAACCTGCCAGGGTTACAAGAAATCCCATCAAACGAACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTGCCAGGGTTACAAGAAATCCCATCAAACGAACAAAAT  50

seq1  CCTCTCCATGCCTGAAATCAATGCAGGCATGTCATTAACGAAGAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCATGCCTGAAATCAATGCAGGCATGTCATTAACGAAGAATAATG  100

seq1  AGGTGGACCAAACCGAACCAAGGCTCAGTGTTCACCCTGCCACTGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACCAAACCGAACCAAGGCTCAGTGTTCACCCTGCCACTGTCTGT  150

seq1  GGCGTCATTTTTATGCTCCTTCATCATAGATCCTTTCACGTGTCTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCATTTTTATGCTCCTTCATCATAGATCCTTTCACGTGTCTGCTAT  200

seq1  ATCAAACATCCTTTTGCCTGTGTCTGCTTTGTAAAAACGTTATTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACATCCTTTTGCCTGTGTCTGCTTTGTAAAAACGTTATTTCCTGT  250

seq1  GTCTGCTTTAGCTAGACATCCTTTCACCTGTGTGCCCCAGCAAACCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTAGCTAGACATCCTTTCACCTGTGTGCCCCAGCAAACCATCA  300

seq1  TTTGACAAAACTGACTTTCCAAACAAACCAGAAGTTTCCACTTCACATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAAACTGACTTTCCAAACAAACCAGAAGTTTCCACTTCACATCG  350

seq1  TGGCTTTGTTTAAAGTGGTGGTGGTGCGGGGTGCTTTCGTTTATGTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGTTTAAAGTGGTGGTGGTGCGGGGTGCTTTCGTTTATGTTCTA  400

seq1  ATTTGAGTGACGACTGTTTTGCTTCATTTTATTTTTGTGTGTCTGTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTGACGACTGTTTTGCTTCATTTTATTTTTGTGTGTCTGTGCTC  450

seq1  AGTGCAAATGTGAATGGGAGCATTCACATGTATGCACATATGTGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAATGTGAATGGGAGCATTCACATGTATGCACATATGTGTTAAGA  500

seq1  CCAGAGAGGTCAACCTCTGGTGTCATTCCTCAGGGCTACTGTGACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGGTCAACCTCTGGTGTCATTCCTCAGGGCTACTGTGACACACA  550

seq1  CTTTTTAATTGTGGCAGTCGGAGGAAAGAGGCAGGCAGATCTTTGTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATTGTGGCAGTCGGAGGAAAGAGGCAGGCAGATCTTTGTGAAC  600

seq1  TTAAGGACAGCCTGGTGTACTATATATCTATATAGTGTACGCTACTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACAGCCTGGTGTACTATATATCTATATAGTGTACGCTACTTACA  650

seq1  CTATACACACACACACACAATTATCTATCCATCTCTATCCATCTATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACACACACACACAATTATCTATCCATCTCTATCCATCTATCTAT  700

seq1  GAGCTCCAGGACAGCCAGGAATATCTAGAGACACCCTGGAGAGACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGGACAGCCAGGAATATCTAGAGACACCCTGGAGAGACAGAGA  750

seq1  CAGAGACACAGAGAGACAGAGAGAGAACTGCAGCTGTAGGAGCTAGTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAGAGAGACAGAGAGAGAACTGCAGCTGTAGGAGCTAGTCCG  800

seq1  CCTCGCCTCCTGTCTTCACCCAACAGTCTTTGACAATGGGTAATAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCTCCTGTCTTCACCCAACAGTCTTTGACAATGGGTAATAGCTTT  850

seq1  GACTCTGTGATGGCCCACCGCATGGAGGAGCCAGATCTTCTAGTCAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGATGGCCCACCGCATGGAGGAGCCAGATCTTCTAGTCAGTTC  900

seq1  TTCCTTTGGGAACACTGCTGTTTTCTTCCACCCACCTTCCTTTAGGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TTCCTTTGGGAACACTGCTGTTTTCTTCCACCCACCTTCCTT--AGAATA  948

seq1  GTCTCCCATGTACCTCTTTCGAGTTGTGTGTGAAAGTATTCTTTACAGGA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCTCCCATGTACCTCTTTCGAG-TGTGTGTGAAAGTATTCTTTACAGGA  997

seq1  CCCCCCAATGGTAGGATGCCCATTCACACTGTAAGGATGTGTCACTTTGA  1050
       ||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  -CCCCCAATGGTAGGATGCCCATTCACACTGTA--GATGTGTCACTTTGA  1044

seq1  AACTTACTTCCAATGTATCTGTCTGGAAGTTGAGCCAAAACCACACT-GC  1099
      ||||||||| | |||||||||||||||||||||||||||||||| || ||
seq2  AACTTACTTTC-ATGTATCTGTCTGGAAGTTGAGCCAAAACCACCCTGGC  1093

seq1  GTACAGCAGTGGCTACAAGCTCGTTTCCTAACCCTCGGTAACATTTTACA  1149
      |||  ||||  ||| |||||||| ||||| |||||| || |||  |||||
seq2  GTAAGGCAGATGCT-CAAGCTCGGTTCCT-ACCCTC-GTGACA--TTACA  1138

seq1  TTCGACAATAATAAAAACTAAACACCAAAACAAGACAGCGCTGGGTGTGA  1199
       |||||||||   |||||||||   | |||||||||| ||||||  ||||
seq2  ATCGACAATA--TAAAACTAAA---CCAAACAAGACATCGCTGG--GTGA  1181

seq1  TGGTGTACA  1208
      |||||||||
seq2  TGGTGTACA  1190

seq1: chr18_66772227_66773015
seq2: B6Ng01-087P05.g_68_856 (reverse)

seq1  ACACTCACAGTGACA-CACCAACT-CCAACAGGTCCACTCCTAATAGTGC  48
      |||||||||| |||| |||||||| |||||||||||||||||||||||||
seq2  ACACTCACAG-GACACCACCAACTCCCAACAGGTCCACTCCTAATAGTGC  49

seq1  CATTCCCTGGGCTGAGCATATACAAACAATCACAAACATATAACATACAA  98
      |||||| |||| ||||| | | ||||||||||||||||||||||||||||
seq2  CATTCCATGGGATGAGC-TGTGCAAACAATCACAAACATATAACATACAA  98

seq1  AATATAACATATAATAAATATATAGCATATAACATACAATATATAACATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACATATAATAAATATATAGCATATAACATACAATATATAACATG  148

seq1  CAATATAAAATATCAAAACACCTAATATCTAATAAAATATAAAATATTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAAATATCAAAACACCTAATATCTAATAAAATATAAAATATTTT  198

seq1  ATATATCACCTCTGCTTTGCATTTGTTATTTTGTCCTTATTAAAAAAATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCACCTCTGCTTTGCATTTGTTATTTTGTCCTTATTAAAAAAATT  248

seq1  CTGGAAGTTCTGAATATGAAATAATTGGCTGAGAGAATTGGGGGCTAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTTCTGAATATGAAATAATTGGCTGAGAGAATTGGGGGCTAATT  298

seq1  TTAAAGACTAGAGTTGAGCTGTTCTAAGATTGAGTCTTCTGAACGTGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTAGAGTTGAGCTGTTCTAAGATTGAGTCTTCTGAACGTGCTC  348

seq1  ACTATAGTAAAATTGCAGCAAGGAATAATACATATACATAATAATACACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTAAAATTGCAGCAAGGAATAATACATATACATAATAATACACA  398

seq1  TAATGTAAGGAGCACAGGGTGAGGTGGGTTCAGAAGAAAATGAGCTGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGGAGCACAGGGTGAGGTGGGTTCAGAAGAAAATGAGCTGTGC  448

seq1  AGAGTGAGCCCTGCCTGACCTGAGGAAAAGGATCTTGTAATCACGCATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCCCTGCCTGACCTGAGGAAAAGGATCTTGTAATCACGCATGT  498

seq1  ACGCCATCTTTGTTTGATTTCCTGGTGGAGGGGTGACTCATGAGTGTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCATCTTTGTTTGATTTCCTGGTGGAGGGGTGACTCATGAGTGTCCC  548

seq1  AATAAACACATCTGCACACTTATTTAGAAGCCTCCGGGTAAAGGATCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACATCTGCACACTTATTTAGAAGCCTCCGGGTAAAGGATCTTT  598

seq1  TCTACTAGATACTCAGAGGCGTCTGAAAGATATGCAAATTAACCCGATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAGATACTCAGAGGCGTCTGAAAGATATGCAAATTAACCCGATCT  648

seq1  GATCATTAGAAAACATAGACATATTGAAATACCATACTATTACCCGTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAGAAAACATAGACATATTGAAATACCATACTATTACCCGTGAA  698

seq1  CGTGTGCAGCTAAAAGCAATTCCATTCTACTTAAAACTCACATCTCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCAGCTAAAAGCAATTCCATTCTACTTAAAACTCACATCTCTTTG  748

seq1  TAAATCTAGACAGCATGTTGGAATAAAGATGCAATGAATTC  789
      |||||||||||||||||||||||||||| ||||||||||||
seq2  TAAATCTAGACAGCATGTTGGAATAAAGTTGCAATGAATTC  789