BAC Information

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BAC

Clone NameB6Ng01-088A21
Chromosome18 (Build37)
Map Location 17,800,068 - 17,910,755
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A21.bB6Ng01-088A21.g
ACCDH901016DH901017
length1,1841,175
definitionDH901016|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A21, 5' end.DH901017|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,909,581 - 17,910,755)(17,800,068 - 17,801,222)
sequence
gaattcaaatttataatgcctatatgacaacccaggctaggccatatatt
tcatgcagacccagggatgtttggaatccagagggggatcagcaagacca
ctgggatttcctgaccaccatccaagttccaggttcagagagagactatg
tcttactagagcaagggaaagattgatagaacagtcactggtcatcctcc
tctggtcttcaatctaggtacagggacaagcatctgcctaaacacacaca
cacctcattgtttttattgcttacaaatctgtaacaacacttatctaatg
gagatgtcctctactgcaggaataaatgaatgaacacacatatatttcac
atacagagagagagagagacagagataagagagagacatagtggaggcac
agaaaaataatttataaagaattctattcccccccaagacttcaacctaa
gccagttaaggcatcaaaaagaactggtgaggacattctagtgattgcta
tgcagacatatttctcttgtgttctagaaaaccaaagtttcatttatttt
tatttcaaagcaattttcacaaatgggagacaaaattgccatcttgacag
aaagcatttatctaaaagaatattatagacctctgcacaaggcaagacaa
attaaaatagtttggcaataacaaaaatttatgttgagaatatagaagag
tttcttcagcaaaccaaccaaccaaccaaccaacaaacaaacaaaatccc
actttggtaggtttacatcaagtacgtatttatcatgtcctattaggtat
aggaagctctcaccatgacttagttaccttgttctcttttctgtggtact
aaccttactgtctctcatacacagtagacaacattctaccattcagctgt
gccaattttggttatacaggacatcaaacaaagcccattggaatacacag
gaacagtgttggcttgtttacccaggatgcacgaggacatgcatttgatg
ctccagtgatcagataaattaaagagcacagaagtaaaacattttacaaa
cacttaagccaatatatacgttaactgtaagtgattaaggtccttaggat
aatctgcataaataaatgatagccctcaaatatgcttttcttcatgtcca
ccttcttgtggaccttactgcctactgcaatcat
gaattccatttgccctttttacttttattaactttaaaagcctgctatga
cggtctcttttctctctttctctctttgcttctagactccccttttcttc
tttcttttctagctcttttattctaatttcttgtctttcatcctacttat
aaaattaaattaagcacgggatgtgatcctttttcgatacagaactctaa
gtttcaccttgtcactgagataatctaaatatgctcatgttctcttaagg
cattcttatagaaagtcatgcacttaacaaaattgtagatgtacaccttt
atcataggaagagcacacatacacacattaatacatacatacatagtaca
tacataatacatacacaaatatacacagagagagacagagagagagaggg
agagagagagagagagaacacacaaagcaagccatgatctagtcacagtg
gtggcaatggattttttgtaagtcttaaaagagttcttagagcttaagtg
aggtcaattattttatttgatgatcattgttttcttaataatttgacctt
tgcctactatttgacaatactgacaagaaatttgcaacatattttaaact
acatccctacaagagtaattcctaattttcagtggggatcacatcccaat
actctgaagttagccactacaatgatgtgcaattcctccatgtaaaatgg
gaaagtatttttatggaaaataattgcatctctgcactatttacaatgcc
agtcacaatgaacattctatataacttatggtttagtgtactttttaggt
aaggagggaaggaaaatgaaagcttgtatatatgttcaacacagatggaa
tttcaaataatttagtccctatttagttggaccattggttacaatatgtg
gaggaaaaactgaactaaatttgcaggtcaccaaacaagaaaagttcctt
tataagaacacagtctataatttataactgtcctcctactcacttgcttc
cgtctggaacaatttataaagaaaatttagaacttagttaaaatgaaaat
gatttccttcctgtgtgaaaggaaaagtaattgatcttctttccttatcg
gttccaagggagggtgttcttgccgttctgaattcaccactgcattctcg
agccaataccagtaccacccaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17909581_17910755
seq2: B6Ng01-088A21.b_47_1230 (reverse)

seq1  ATGATTTCAAGTA-GCAGTAAAGATCACAAGAAGGT-GACATTGAAGAAA  48
      |||||| | |||| ||||||| |  ||||||||||| |||| ||||||||
seq2  ATGATTGC-AGTAGGCAGTAAGGTCCACAAGAAGGTGGACA-TGAAGAAA  48

seq1  A-CATATTTGATGGTTATCATT--ATTATGCAGATTATCTTAAAGGACTT  95
      | ||||||||| || |||||||   |||||||||||||| ||| |  |||
seq2  AGCATATTTGAGGGCTATCATTTATTTATGCAGATTATCCTAAGGACCTT  98

seq1  AATCACTTACAGTTAA-GTATATATT-GCTTAAGTGTTTGTAAAATGTTT  143
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AATCACTTACAGTTAACGTATATATTGGCTTAAGTGTTTGTAAAATGTTT  148

seq1  --ATTCTGTGCTCTTTAATTTATCTTGAT-ACTGG-GCATCAAATGCATG  189
         ||||||||||||||||||||| |||| ||||| ||||||||||||||
seq2  TACTTCTGTGCTCTTTAATTTATC-TGATCACTGGAGCATCAAATGCATG  197

seq1  TCCTCGTGCATCCTGGGTAAACAAGCCAACACTGTTCCTGTGTATT-CAA  238
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTCGTGCATCCTGGGTAAACAAGCCAACACTGTTCCTGTGTATTCCAA  247

seq1  TGGGCTTTGTTTGATGTCCTGTATAACCAAAATTGGCACAGCTGAATGGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGTTTGATGTCCTGTATAACCAAAATTGGCACAGCTGAATGGT  297

seq1  AGAATGTTGTCTACTGTGTATGAGAGACAGTAAGGTTAGTACCACAGAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTGTCTACTGTGTATGAGAGACAGTAAGGTTAGTACCACAGAAA  347

seq1  AGAGAACAAGGTAACTAAGTCATGGTGAGAGCTTCCTATACCTAATAGGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGGTAACTAAGTCATGGTGAGAGCTTCCTATACCTAATAGGA  397

seq1  CATGATAAATACGTACTTGATGTAAACCTACCAAAGTGGGATTTTGTTTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAATACGTACTTGATGTAAACCTACCAAAGTGGGATTTTGTTTG  447

seq1  TTTGTTGGTTGGTTGGTTGGTTGGTTTGCTGAAGAAACTTTTCTATATTC  488
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTGTTGGTTGGTTGGTTGGTTGGTTTGCTGAAGAAACTCTTCTATATTC  497

seq1  TCAACATAAATTTTTGTTATTGCCAAACTATTTTAATTTGTCTTGCCTTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATAAATTTTTGTTATTGCCAAACTATTTTAATTTGTCTTGCCTTG  547

seq1  TGCAGAGGTCTATAATATTCTTTTAGATAAATGCTTTCTGTCAAGATGGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGTCTATAATATTCTTTTAGATAAATGCTTTCTGTCAAGATGGC  597

seq1  AATTTTGTCTCCCATTTGTGAAAATTGCTTTGAAATAAAAATAAATGAAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTCCCATTTGTGAAAATTGCTTTGAAATAAAAATAAATGAAA  647

seq1  CTTTGGTTTTCTAGAACACAAGAGAAATATGTCTGCATAGCAATCACTAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTTCTAGAACACAAGAGAAATATGTCTGCATAGCAATCACTAG  697

seq1  AATGTCCTCACCAGTTCTTTTTGATGCCTTAACTGGCTTAGGTTGAAGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTCACCAGTTCTTTTTGATGCCTTAACTGGCTTAGGTTGAAGTC  747

seq1  TTGGGGGGGAATAGAATTCTTTATAAATTATTTTTCTGTGCCTCCACTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGGAATAGAATTCTTTATAAATTATTTTTCTGTGCCTCCACTAT  797

seq1  GTCTCTCTCTTATCTCTGTCTCTCTCTCTCTCTGTATGTGAAATATATGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTTATCTCTGTCTCTCTCTCTCTCTGTATGTGAAATATATGT  847

seq1  GTGTTCATTCATTTATTCCTGCAGTAGAGGACATCTCCATTAGATAAGTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTCATTTATTCCTGCAGTAGAGGACATCTCCATTAGATAAGTG  897

seq1  TTGTTACAGATTTGTAAGCAATAAAAACAATGAGGTGTGTGTGTGTTTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAGATTTGTAAGCAATAAAAACAATGAGGTGTGTGTGTGTTTAG  947

seq1  GCAGATGCTTGTCCCTGTACCTAGATTGAAGACCAGAGGAGGATGACCAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTTGTCCCTGTACCTAGATTGAAGACCAGAGGAGGATGACCAG  997

seq1  TGACTGTTCTATCAATCTTTCCCTTGCTCTAGTAAGACATAGTCTCTCTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTCTATCAATCTTTCCCTTGCTCTAGTAAGACATAGTCTCTCTC  1047

seq1  TGAACCTGGAACTTGGATGGTGGTCAGGAAATCCCAGTGGTCTTGCTGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGAACTTGGATGGTGGTCAGGAAATCCCAGTGGTCTTGCTGAT  1097

seq1  CCCCCTCTGGATTCCAAACATCCCTGGGTCTGCATGAAATATATGGCCTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTGGATTCCAAACATCCCTGGGTCTGCATGAAATATATGGCCTA  1147

seq1  GCCTGGGTTTTCATATAGGCATTATAAATTTGAATTC  1175
      ||||||||| |||||||||||||||||||||||||||
seq2  GCCTGGGTTGTCATATAGGCATTATAAATTTGAATTC  1184

seq1: chr18_17800068_17801222
seq2: B6Ng01-088A21.g_67_1241

seq1  GAATTCCATTTGCCCTTTTTACTTTTATTAACTTTAAAAGCCTGCTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGCCCTTTTTACTTTTATTAACTTTAAAAGCCTGCTATGA  50

seq1  CGGTCTCTTTTCTCTCTTTCTCTCTTTGCTTCTAGACTCCCCTTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTCTTTTCTCTCTTTCTCTCTTTGCTTCTAGACTCCCCTTTTCTTC  100

seq1  TTTCTTTTCTAGCTCTTTTATTCTAATTTCTTGTCTTTCATCCTACTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTAGCTCTTTTATTCTAATTTCTTGTCTTTCATCCTACTTAT  150

seq1  AAAATTAAATTAAGCACGGGATGTGATCCTTTTTCGATACAGAACTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATTAAGCACGGGATGTGATCCTTTTTCGATACAGAACTCTAA  200

seq1  GTTTCACCTTGTCACTGAGATAATCTAAATATGCTCATGTTCTCTTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCTTGTCACTGAGATAATCTAAATATGCTCATGTTCTCTTAAGG  250

seq1  CATTCTTATAGAAAGTCATGCACTTAACAAAATTGTAGATGTACACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTATAGAAAGTCATGCACTTAACAAAATTGTAGATGTACACCTTT  300

seq1  ATCATAGGAAGAGCACACATACACACATTAATACATACATACATAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGAAGAGCACACATACACACATTAATACATACATACATAGTACA  350

seq1  TACATAATACATACACAAATATACACAGAGAGAGACAGAGAGAGAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATACATACACAAATATACACAGAGAGAGACAGAGAGAGAGAGGG  400

seq1  AGAGAGAGAGAGAGAGAACACACAAAGCAAGCCATGATCTAGTCACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAACACACAAAGCAAGCCATGATCTAGTCACAGTG  450

seq1  GTGGCAATGGATTTTTTGTAAGTCTTAAAAGAGTTCTTAGAGCTTAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATGGATTTTTTGTAAGTCTTAAAAGAGTTCTTAGAGCTTAAGTG  500

seq1  AGGTCAATTATTTTATTTGATGATCATTGTTTTCTTAATAATTTGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATTATTTTATTTGATGATCATTGTTTTCTTAATAATTTGACCTT  550

seq1  TGCCTACTATTTGACAATACTGACAAGAAATTTGCAACATATTTTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTATTTGACAATACTGACAAGAAATTTGCAACATATTTTAAACT  600

seq1  ACATCCCTACAAGAGTAATTCCTAATTTTCAGTGGGGATCACATCCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTACAAGAGTAATTCCTAATTTTCAGTGGGGATCACATCCCAAT  650

seq1  ACTCTGAAGTTAGCCACTACAATGATGTTCAATTCCTCCATGTAAAATGG  700
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTCTGAAGTTAGCCACTACAATGATGTGCAATTCCTCCATGTAAAATGG  700

seq1  GAAAGTATTTTTATGGAAAATAATTGCATCTCTGCACTATTTACAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTTTTATGGAAAATAATTGCATCTCTGCACTATTTACAATGCC  750

seq1  AGTCACAATGAACATTCTATATAACTTATGGTTTAGTGTACTTTTTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAATGAACATTCTATATAACTTATGGTTTAGTGTACTTTTTAGGT  800

seq1  AAGGAGGGAAGGAAAATGAAAGCTTGTATATATGTTCAACACAGATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGAAGGAAAATGAAAGCTTGTATATATGTTCAACACAGATGGAA  850

seq1  TTTCAAATAATTTAGTCCCTATTTAGTTGGACCATTGGTTACAATATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATAATTTAGTCCCTATTTAGTTGGACCATTGGTTACAATATGTG  900

seq1  GAGGAAAAACTGAACTAAATTTGCAGGTCACCAAACAAGATAAGTTCCTT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGGAAAAACTGAACTAAATTTGCAGGTCACCAAACAAGAAAAGTTCCTT  950

seq1  TATAAG-ACACAGTCTAT-ATTTATAACTGT-CTCCTACTCACTTGC-TC  996
      |||||| ||||||||||| |||||||||||| ||||||||||||||| ||
seq2  TATAAGAACACAGTCTATAATTTATAACTGTCCTCCTACTCACTTGCTTC  1000

seq1  CGTCTGGAAC-ATTTATAAAG-ATATTTAG-ACTTAGTT-AAATG-AAAT  1041
      |||||||||| |||||||||| | |||||| |||||||| ||||| ||||
seq2  CGTCTGGAACAATTTATAAAGAAAATTTAGAACTTAGTTAAAATGAAAAT  1050

seq1  GATTT-CTTCC--TGTGAAAGG-AAAGTAATTGTTCTCTTTCCCTTATCA  1087
      ||||| |||||  ||||||||| |||||||||| |||  || ||||||| 
seq2  GATTTCCTTCCTGTGTGAAAGGAAAAGTAATTGATCTTCTTTCCTTATCG  1100

seq1  GTCCCA--GGCAGGTG-TCT--GCGTTCTAGAATCACCACTGCATTCT--  1130
      || |||  ||  |||| |||   ||||||  | |||||||||||||||  
seq2  GTTCCAAGGGAGGGTGTTCTTGCCGTTCTGAATTCACCACTGCATTCTCG  1150

seq1  AGCCAATACCAGTACACACCAAGGT  1155
      |||||||||||||||   |||||||
seq2  AGCCAATACCAGTACCACCCAAGGT  1175