BAC Information

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BAC

Clone NameB6Ng01-088E12
Chromosome18 (Build37)
Map Location 37,241,384 - 37,241,898
singlet/doubletsinglet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12
Upstream geneLOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E12.bB6Ng01-088E12.g
ACCDH901180DH901181
length5271,272
definitionDH901180|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E12, 5' end.DH901181|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tgggctctctgtgatgcatttcaagccttttgaattgatgatcacattgt
acagggacctgagcatcaacatcaagtgccctggctcagtttcaagactc
accactccaacagctgcaacatgggatccaaacgcactcaactggaattg
gctaagaattcacaattgtgtaagatggcagaagcacctgttacaattcc
agataccacaaacacaaactgaattttaccagagttgaccttcacacctc
catctggttacctcacaaaactctccatcaccgatccataatcctgaaaa
gtctatgttttacgatgagctccccattactggagtcatccacttcacta
ctgcagactccctgtgagagggtgcaggatctgctcccatctgtgcacaa
taatctggctgaaggggcagctgcagtttagttccactcagctgtcctgg
aagcaccagatagctctctctctctctctctctctctctctctctctctc
tctctctctatatatatatatatatat
gaattcttatgcagggagaagatcatgtcttagaatgtatatttttaagc
acaaaaacagagtaaaaaacaaagaatcatatagaaagatttctgaattg
attctaaaaagaaaaatgagattttgtctattagcatgaatagactggtc
aaaaattgcagtgccttttactaatgctgaaattgcttcattaagaaaat
gaacattggcaaacagcttgcagattttttttgagaagttatcaacaaat
acctcaaaagtagatgacttcatttttaaaatgaaataattagatttttc
ctcatgtagtaaaagggacaccaatttctggagcttctatattctatacc
aatgtaaataaatcagaaatggcaggttataaagaaaaggtaagtaaagt
ggttcagggcccttataattcagttcacaaagcagagttgtatgccattc
ttatggtattattaggttttcctgaatctcttaatatagttgctgactct
caatatatagaaagagttgttttgcatatagaaactactgaatttattta
gaatgagccagaattagctttgctatttattcaattatgagaagtagaaa
tcatccattgtatataacacatatggatctaccaggccctctggcatgag
gtaatgatgaaattgatccggtattaataggaaatgtgctagaagcttta
gaatttcataagaaacaccatgataacagtaaagatttgaagaaaagaat
ttttctatcactttgcaacagtcaaaggaaattataagtaaatctcctac
ttggtatttgtataacaaagctccattacctgcagggagtactccaaggt
accctaggaaatgaaatttgatagatggatgtgtttcatttttcagagtt
tgggaaaataatgtatatgcactgtaccatatatacatactcaggatttc
aatgggtaactgcttttagtctgaaaatgtcaattctggtgatatgcatt
tattagacataatggctatcatgggaaattctgtaaaattaaaactgata
atgctacaacattttctttgataaaatgaaacattttttgcgattataaa
taaagcatatttatagtatctacacattcttcagggatgagcaatttaga
agaatcacattctctctaagaaggttttatattacagaaaaggtacaatt
ccgataagatacatggcttatatactttctctaatggctatgagtgagca
cacacagaagcgtgggattaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37241384_37241898
seq2: B6Ng01-088E12.b_44_558 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAT  50

seq1  CTGGTGCTTCCAGGACAGCTGAGTGGAACTAAACTGCAGCTGCCCCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTTCCAGGACAGCTGAGTGGAACTAAACTGCAGCTGCCCCTTCA  100

seq1  GCCAGATTATTGTGCACAGATGGGAGCAGATCCTGCACCCTCTCACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTATTGTGCACAGATGGGAGCAGATCCTGCACCCTCTCACAGGG  150

seq1  AGTCTGCAGTAGTGAAGTGGATGACTCCAGTAATGGGGAGCTCATCGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAGTAGTGAAGTGGATGACTCCAGTAATGGGGAGCTCATCGTAA  200

seq1  AACATAGACTTTTCAGGATTATGGATCGGTGATGGAGAGTTTTGTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGACTTTTCAGGATTATGGATCGGTGATGGAGAGTTTTGTGAGGT  250

seq1  AACCAGATGGAGGTGTGAAGGTCAACTCTGGTAAAATTCAGTTTGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATGGAGGTGTGAAGGTCAACTCTGGTAAAATTCAGTTTGTGTTT  300

seq1  GTGGTATCTGGAATTGTAACAGGTGCTTCTGCCATCTTACACAATTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATCTGGAATTGTAACAGGTGCTTCTGCCATCTTACACAATTGTGA  350

seq1  ATTCTTAGCCAATTCCAGTTGAGTGCGTTTGGATCCCATGTTGCAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCCAATTCCAGTTGAGTGCGTTTGGATCCCATGTTGCAGCTGT  400

seq1  TGGAGTGGTGAGTCTTGAAACTGAGCCAGGGCACTTGATGTTGATGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGTGAGTCTTGAAACTGAGCCAGGGCACTTGATGTTGATGCTCA  450

seq1  GGTCCCTGTACAATGTGATCATCAATTCAAAAGGCTTGAAATGCATCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGTACAATGTGATCATCAATTCAAAAGGCTTGAAATGCATCACA  500

seq1  GAGAGCCCAGAATTC  515
      |||||||||||||||
seq2  GAGAGCCCAGAATTC  515