BAC Information

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BAC

Clone NameB6Ng01-088P16
Chromosome18 (Build37)
Map Location 57,990,464 - 58,100,045
singlet/doubletdoublet
Overlap geneSlc12a2, 9330166H04Rik
Upstream geneMarch3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P16.bB6Ng01-088P16.g
ACCDH901685DH901686
length1,1551,045
definitionDH901685|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P16, 5' end.DH901686|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,098,873 - 58,100,045)(57,990,464 - 57,991,508)
sequence
gaattcctaaaagcttgctccggtaccactggccagccagttagtagtac
atcatttaatttaactcagggcagagaaaagcgcaggtaaccatttcaag
tcagcttatctgcatctgaccaggcgactggaattggaaatgcatagaga
ataattatccagcaacttacttttctttttttggcttggtgttgatatct
ccaaggaccatgatatcagagaagtctatccggaatttactcaataaagt
agccatcctatgacaagaagaacagaatcagacatggtaaggatgttcac
aagcatccctacgccctacacatgtggtaagatgacttagagggaaagtc
tatcagctgctgctcaaatttcctgctcatactctccattaaaaaagaaa
acatcgcaaccgcccaagtagagatgactatagtctgtctatctccctgc
ttactgtacggggttaaaccttcactccatctggcatcacttaggaggct
gtgtcacttttggctgtgtcactaagtaaatttccagaaaaactgagcag
cgatgcttctgtttcctggctgcagacacagtttgaccaactgctgcata
agcagccagcatgccttcctcctctgatggactactgtaccctcggactg
tgagctatcacaagcccttccttctctcaacgtgtcattcaggcacctca
tagcagtgaggaagtaacgaatacagcagctaatcatgggtgagcaaaga
aggctgtccataatgaaacgggacagctctcttgatgaattttagtcaaa
gcatattgcaacatagatttaataacaataaaaagcctcttttaagttat
tttgggttattacttactagattttatcttaaaatatgttaaggcccaaa
taaaatctttaaaaccatgtttaagattcagttcatagaagagaaaaaac
tcatggtattgtctttggagatggtgagagaaagtgcgccagtctgacgt
tggtaaagacatgtccaaggtctgggtcagagtcacgaaacacgagggta
acaacagtgagctggagcacaagaaagcatcagctagcgaaactcatgcc
ttcataaagctttcaagagtatgacagtattcctaccagttattggtgta
gtaaa
gaattcagcgacagcttattaaatagtttgcattcacttcctaaatacag
acatacttgtttttttttttaaagaaaaagctatcttccttataattaaa
tttccttacgattaaatgcaatatagtaggcactggtaaagtgatcgcat
taatgcaatcaagcccagagattaggtagctaatactacatcttcaacat
tttgaattatcttctatatgaacaggttctgtattgtgtaaaaaagaaaa
aaaattaaaactttgttatttttttttctccccaaactggtgattcagtt
ctgacaatgtttttaagtgtgaatgcctcacataacatgtgataattact
agtagaaagcctataggttatacctgggaactatagaaacaaaaccagat
aatcagagtaaattccagcacgcttgttaacactggccaatcagcacaca
ggctttctaccttcctgttacatgtctcaatatcacgaagtcagttttag
agtgttcatcattatccagtttagactgcaagctaaacatgactcccagc
accctcggttattagccatatgcagccttggctcatctacaatttacctg
tctctgatgtccatattagtccaccatggtctctgatcctgtgttctgat
gactctccttggaataatgaagacagctgttgggcattgagctgttggaa
gcacttggcgtatgcatataaatcgggtctcctttaactttacatcattt
tcttttccttatctgtattcatctagcagctgaggaaaatgcatcctagc
atctaaataattcggcatttcctctgcagaattgtaaaagcagcataatg
gacagaggttatgaatgtcccgaggcaaactcattgaatcgctacatttc
ttacacatttgctaactgctttcatttttgaggttcaagtagagaatcgc
cataaatggatgaacccacttggatgaaatgtgtaagaatttggaactcg
ttataattgatgccatgctacatttaatagaaaggtgagatcggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58098873_58100045
seq2: B6Ng01-088P16.b_49_1203 (reverse)

seq1  TTTACTACAACAATAAATTGTGTAGGATATACTTGTCATACCTTCCTTTT  50
      ||||||||| |||||| |   |||||| |||| |||||||     || ||
seq2  TTTACTACACCAATAACT--GGTAGGA-ATAC-TGTCATA-----CTCTT  41

seq1  GAAAGCTTTTTATGAA-GCATGAGTGTCGCTTAGCTGATTGCTTTTCTTG  99
      ||||||  |||||||| |||||||| |||| ||||||| ||| |||||| 
seq2  GAAAGC--TTTATGAAGGCATGAGTTTCGC-TAGCTGA-TGC-TTTCTT-  85

seq1  GTGCTCCAGCTCACTGTTGTTACCCTCGTGTTTCGTGACTCCTGACCCAG  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGCTCCAGCTCACTGTTGTTACCCTCGTGTTTCGTGACT-CTGACCCAG  134

seq1  ACCTTGGACATGGTCTTTACCAAACGTCAGACTTGGCGCACTTTCTCTCA  199
      ||||||||||| ||||||||| |||||||||| |||||||||||||||||
seq2  ACCTTGGACAT-GTCTTTACC-AACGTCAGAC-TGGCGCACTTTCTCTCA  181

seq1  CCATCTCCAAAGACAATACCATGAGTTTTTTCTCTTCTATGAACTGAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCAAAGACAATACCATGAGTTTTTTCTCTTCTATGAACTGAATC  231

seq1  TTAAACATGGTTTTAAAGATTTTATTTGGGCCTTAACATATTTTAAGAT-  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAAACATGGTTTTAAAGATTTTATTTGGGCCTTAACATATTTTAAGATA  281

seq1  AAATCTAGTAAGTAATAACCCAAAATAACTTAAAAGAGGCTTTTTATTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGTAAGTAATAACCCAAAATAACTTAAAAGAGGCTTTTTATTGT  331

seq1  TATTAAATCTATGTTTGCAATATGCTTTGACTAAAATTCATCAAGAGAGC  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTAAATCTATG-TTGCAATATGCTTTGACTAAAATTCATCAAGAGAGC  380

seq1  TGTCCCGTTTCATTATGGACAGCCTTCTTTGCTCACCCATGATTAGCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGTTTCATTATGGACAGCCTTCTTTGCTCACCCATGATTAGCTGC  430

seq1  TGTATTCGTTACTTCCTCACTGCTATGAGGTGCCTGAATGACACGTTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCGTTACTTCCTCACTGCTATGAGGTGCCTGAATGACACGTTGAG  480

seq1  AGAAGGAAGGGCTTGTGATAGCTCACAGTCCGAGGGTACAGTAGTCCATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGGGCTTGTGATAGCTCACAGTCCGAGGGTACAGTAGTCCATC  530

seq1  AGAGGAGGAAGGCATGCTGGCTGCTTATGCAGCAGTTGGTCAAACTGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAAGGCATGCTGGCTGCTTATGCAGCAGTTGGTCAAACTGTGT  580

seq1  CTGCAGCCAGGAAACAGAAGCATCGCTGCTCAGTTTTTCTGGAAATTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCAGGAAACAGAAGCATCGCTGCTCAGTTTTTCTGGAAATTTAC  630

seq1  TTAGTGACACAGCCAAAAGTGACACAGCCTCCTAAGTGATGCCAGATGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACACAGCCAAAAGTGACACAGCCTCCTAAGTGATGCCAGATGGA  680

seq1  GTGAAGGTTTAACCCCGTACAGTAAGCAGGGAGATAGACAGACTATAGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTTTAACCCCGTACAGTAAGCAGGGAGATAGACAGACTATAGTC  730

seq1  ATCTCTACTTGGGCGGTTGCGATGTTTTCTTTTTTAATGGAGAGTATGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACTTGGGCGGTTGCGATGTTTTCTTTTTTAATGGAGAGTATGAG  780

seq1  CAGGAAATTTGAGCAGCAGCTGATAGACTTTCCCTCTAAGTCATCTTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATTTGAGCAGCAGCTGATAGACTTTCCCTCTAAGTCATCTTACC  830

seq1  ACATGTGTAGGGCGTAGGGATGCTTGTGAACATCCTTACCATGTCTGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTAGGGCGTAGGGATGCTTGTGAACATCCTTACCATGTCTGATT  880

seq1  CTGTTCTTCTTGTCATAGGATGGCTACTTTATTGAGTAAATTCCGGATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCTTGTCATAGGATGGCTACTTTATTGAGTAAATTCCGGATAG  930

seq1  ACTTCTCTGATATCATGGTCCTTGGAGATATCAACACCAAGCCAAAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGATATCATGGTCCTTGGAGATATCAACACCAAGCCAAAAAAA  980

seq1  GAAAAGTAAGTTGCTGGATAATTATTCTCTATGCATTTCCAATTCCAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAGTTGCTGGATAATTATTCTCTATGCATTTCCAATTCCAGTC  1030

seq1  GCCTGGTCAGATGCAGATAAGCTGACTTGAAATGGTTACCTGCGCTTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCAGATGCAGATAAGCTGACTTGAAATGGTTACCTGCGCTTTTC  1080

seq1  TCTGCCCTGAGTTAAATTAAATGATGTACTACTAACTGGCTGGCCAGTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGAGTTAAATTAAATGATGTACTACTAACTGGCTGGCCAGTGG  1130

seq1  TACCGGAGCAAGCTTTTAGGAATTC  1173
      |||||||||||||||||||||||||
seq2  TACCGGAGCAAGCTTTTAGGAATTC  1155

seq1: chr18_57990464_57991508
seq2: B6Ng01-088P16.g_73_1117

seq1  GAATTCAGCGACAGCTTATTAAATAGTTTGCATTCACTTCCTAAATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGACAGCTTATTAAATAGTTTGCATTCACTTCCTAAATACAG  50

seq1  ACATACTTGTTTTTTTTTTTAAAGAAAAAGCTATCTTCCTTATAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTGTTTTTTTTTTTAAAGAAAAAGCTATCTTCCTTATAATTAAA  100

seq1  TTTCCTTACGATTAAATGCAATATAGTAGGCACTGGTAAAGTGATCGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTACGATTAAATGCAATATAGTAGGCACTGGTAAAGTGATCGCAT  150

seq1  TAATGCAATCAAGCCCAGAGATTAGGTAGCTAATACTACATCTTCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAATCAAGCCCAGAGATTAGGTAGCTAATACTACATCTTCAACAT  200

seq1  TTTGAATTATCTTCTATATGAACAGGTTCTGTATTGTGTAAAAAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTATCTTCTATATGAACAGGTTCTGTATTGTGTAAAAAAGAAAA  250

seq1  AAAATTAAAACTTTGTTATTTTTTTTTCTCCCCAAACTGGTGATTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAACTTTGTTATTTTTTTTTCTCCCCAAACTGGTGATTCAGTT  300

seq1  CTGACAATGTTTTTAAGTGTGAATGCCTCACATAACATGTGATAATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATGTTTTTAAGTGTGAATGCCTCACATAACATGTGATAATTACT  350

seq1  AGTAGAAAGCCTATAGGTTATACCTGGGAACTATAGAAACAAAACCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGCCTATAGGTTATACCTGGGAACTATAGAAACAAAACCAGAT  400

seq1  AATCAGAGTAAATTCCAGCACGCTTGTTAACACTGGCCAATCAGCACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTAAATTCCAGCACGCTTGTTAACACTGGCCAATCAGCACACA  450

seq1  GGCTTTCTACCTTCCTGTTACATGTCTCAATATCACGAAGTCAGTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTACCTTCCTGTTACATGTCTCAATATCACGAAGTCAGTTTTAG  500

seq1  AGTGTTCATCATTATCCAGTTTAGACTGCAAGCTAAACATGACTCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCATCATTATCCAGTTTAGACTGCAAGCTAAACATGACTCCCAGC  550

seq1  ACCCTCGGTTATTAGCCATATGCAGCCTTGGCTCATCTACAATTTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCGGTTATTAGCCATATGCAGCCTTGGCTCATCTACAATTTACCTG  600

seq1  TCTCTGATGTCCATATTAGTCCACCATGGTCTCTGATCCTGTGTTCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGTCCATATTAGTCCACCATGGTCTCTGATCCTGTGTTCTGAT  650

seq1  GACTCTCCTTGGAATAATGAAGACAGCTGTTGGGCATTGAGCTGTTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTTGGAATAATGAAGACAGCTGTTGGGCATTGAGCTGTTGGAA  700

seq1  GCACTTGGCGTATGCATATAAATCGGGTCTCC-TTAAC-TTACATCAATT  748
      |||||||||||||||||||||||||||||||| ||||| |||||||| ||
seq2  GCACTTGGCGTATGCATATAAATCGGGTCTCCTTTAACTTTACATCATTT  750

seq1  TC-TTTCCTTATCTGTATTCATCTAGCAGCTGAGGAAACTGCATCCTAGC  797
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTTTCCTTATCTGTATTCATCTAGCAGCTGAGGAAAATGCATCCTAGC  800

seq1  ATCTAAATAATTCGGCACTTCCTCTGCAGAATTGTAAAAGCAGCATAAAT  847
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ATCTAAATAATTCGGCATTTCCTCTGCAGAATTGTAAAAGCAGCAT-AAT  849

seq1  GGACAGAGGTAATGAATGTCCCGAGGCAAACTCATTGAATCGCTACATTT  897
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGGTTATGAATGTCCCGAGGCAAACTCATTGAATCGCTACATTT  899

seq1  CTTACACATTTGCTAACTGCTTTCATTTTTGAAGGTCAAGTAGAG-ATCG  946
      |||||||||||||||||||||||||||||||| | |||||||||| ||||
seq2  CTTACACATTTGCTAACTGCTTTCATTTTTGAGGTTCAAGTAGAGAATCG  949

seq1  CCATAAATGGATGATACAACTTGGATGAAATGTGTAAGAATTTGAAACTC  996
      ||||||||||||||  | |||||||||||||||||||||||||| |||||
seq2  CCATAAATGGATGAACCCACTTGGATGAAATGTGTAAGAATTTGGAACTC  999

seq1  G-TATAAATGATGCCAATGCTAACCATTTAATAGAAATGTGAGAATCGGC  1045
      | ||||| ||||||| ||||||  ||||||||||||| ||||| ||||||
seq2  GTTATAATTGATGCC-ATGCTA--CATTTAATAGAAAGGTGAG-ATCGGC  1045