BAC Information

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BAC

Clone NameB6Ng01-089B17
Chromosome18 (Build37)
Map Location 88,445,318 - 88,582,513
singlet/doubletdoublet
Overlap geneLOC100039972
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961
Downstream geneLOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089B17.bB6Ng01-089B17.g
ACCDH901774DH901775
length1,1221,021
definitionDH901774|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B17, 5' end.DH901775|Mus musculus domesticus DNA, BAC clone: B6Ng01-089B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,581,389 - 88,582,513)(88,445,318 - 88,446,359)
sequence
gaattcagcatagcgacacactattggcttattcaaacatcagcagaaaa
attacatgtacgtacagggtgtcagagttctgtgagttgttgactcagtt
cagatagcctgttatgtcctcacattcctctttatctttaggtcaagctg
ttcccaggatgttttaactacggggcatacccgagtttgtttttctttgt
tctcagccccagacagcctctaggctcacaaaaaaacagcaatttctgag
tactttatatgacttacaggtcttgaaatttcatctttctttcaccttct
aagtgaagatgtataaaatcaatcttctgagtttcttggctgttgctggt
ataccattagagcacatggcccagtccccctcctatctttactgtttgtg
tgtgcgagcgccatttcttcatttccagttacaccagttaggtaaatcct
tatgttctgtaagttgcagttcattttgattttttagttcctaaaattga
gttttgggctttttttttggaagtaataatttgtcagactcacaaatttc
atcatttaatcatttaaaccaccatgcagttacaaaacaacaatgacaac
agcaacatcaacctgattttggaaccaagtgaccttgattagaattttaa
gtttgcacttctccatctgtataatggtgcataagtttatgcatctgtga
gactgtcttggggttactactgctgtgattaaacaccatggtcaacagca
acttgggaaggaaaggatttccttcacgcacagttccctataacagtgta
tcagaaggaaagagatagcaggaactcaagtaaacctggcagcaggagct
gatgcagaagccaaggaggagtgctgctttctgtcttcttctccaaggct
tgctcagtctgcttttttttatagaacctaggcccatccacagtgggcta
ggttctcccacatcagtcactaagtaagagaatgcactagaggtttgctt
cagcctgagctaatggaggcattttctcaatggaagcgcctctcttgaaa
actgtagtttgtgccaaggttgataaaaactaagccagcatactaacttt
atattctgttggtgtgtgtgag
gaattctaattgatggctttctcagatgtcttcagaaccattattattct
gtctgcagaggccgataatctctggaaatttcatgacatcttcacatctt
gagacagatgttctgaaataattttcaattatgtgtcagcttttggcagt
gtgaggtagatggggaagagacaacagaaaacaggttccaatatgctgtt
ttatttctattgggtctgtcacttggaaagggctctggaatcttgggggc
agttcctatggtagaccctctcccactagatatcagcattcatcacatgg
gcatgtttttttttttgtttttttttttttatcagaaaaattagtttgtc
tagtatggagcaataaaccagttattttgcatgcttatttcccactttga
caatcattttttgaatttgtatgtgagaattatatgtgagtagataagtt
acaggttaaaaaactttcctgagagaagtccaggtctagtgagaaagaag
ccatggctatattacagcatgattagtgttgtgattcctggagaaggttg
tgttaaatgtggatcaaaaaaaaaagatcatctaaattcaatttttaatg
agggaatttcttctgtacaaattgagttttgaaggattaacaggaaaatg
catcctaggaaggacaagcacaggtataacagctgataggagctgtgaca
tgcgatggcagcttgggttatcaaggactatagcacattgctctgcgaat
gggatagggaaagatagggatttggcagctgcagctacacaaaagagacc
ttgacgactgttttgttgtgctttggttttgtttgtttatttgttttttt
taagtaagtcagcttgatatcctggagtactcaaaacaggacttataaag
gttcagtatacattagaagcactctggttctacgtgagagtggggtatgt
gtcattaaccaacaggttccaccttctctagactgggataatctagaaga
tgatgagatgaacttacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88581389_88582513
seq2: B6Ng01-089B17.b_45_1166 (reverse)

seq1  CTCAACACACA-CAACAGATGTATAAAGTTAGTATGCTGGC-TAGTTTTA  48
      ||| ||||||| |||||||  |||||||||||||||||||| ||||||| 
seq2  CTC-ACACACACCAACAGA-ATATAAAGTTAGTATGCTGGCTTAGTTTTT  48

seq1  TTAAAACTTGGCACAAACTACAGTTATCAGAGA-AGGCGCTTCCATTGAG  97
       | || ||||||||||||||||||| ||| ||| ||||||||||||||||
seq2  ATCAACCTTGGCACAAACTACAGTTTTCA-AGAGAGGCGCTTCCATTGAG  97

seq1  AAAATGCCTCCATAAGCTCAGGCTGAAGGCAAACCTCTAGTGCATTCTCT  147
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AAAATGCCTCCATTAGCTCAGGCTGAA-GCAAACCTCTAGTGCATTCTCT  146

seq1  TACTTAGTGACTGATGTGGGAGAACCTAGCCCACTGTGGATGGGGCCTAG  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACTTAGTGACTGATGTGGGAGAACCTAGCCCACTGTGGAT-GGGCCTAG  195

seq1  GTTCTATAAAAAAAAAGCAGACTGAGCAAGCCTTGGGGAAGAAGACAGAA  247
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCTAT-AAAAAAAAGCAGACTGAGCAAGCCTTGGAGAAGAAGACAGAA  244

seq1  AGCAGCACTCCTCCTTGGCTTCTGCATCAGCTCCTGCTGCCAGGTTTACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACTCCTCCTTGGCTTCTGCATCAGCTCCTGCTGCCAGGTTTACT  294

seq1  TGAGTTCCTGCTATCTCTTTCCTTCTGATACACTGTTATAGGGAACTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTGCTATCTCTTTCCTTCTGATACACTGTTATAGGGAACTGTG  344

seq1  CGTGAAGGAAATCCTTTCCTTCCCAAGTTGCTGTTGACCATGGTGTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGGAAATCCTTTCCTTCCCAAGTTGCTGTTGACCATGGTGTTTAA  394

seq1  TCACAGCAGTAGTAACCCCAAGACAGTCTCACAGATGCATAAACTTATGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGTAGTAACCCCAAGACAGTCTCACAGATGCATAAACTTATGC  444

seq1  ACCATTATACAGATGGAGAAGTGCAAACTTAAAATTCTAATCAAGGTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATACAGATGGAGAAGTGCAAACTTAAAATTCTAATCAAGGTCAC  494

seq1  TTGGTTCCAAAATCAGGTTGATGTTGCTGTTGTCATTGTTGTTTTGTAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCAAAATCAGGTTGATGTTGCTGTTGTCATTGTTGTTTTGTAAC  544

seq1  TGCATGGTGGTTTAAATGATTAAATGATGAAATTTGTGAGTCTGACAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTGGTTTAAATGATTAAATGATGAAATTTGTGAGTCTGACAAAT  594

seq1  TATTACTTCCAAAAAAAAAGCCCAAAACTCAATTTTAGGAACTAAAAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCCAAAAAAAAAGCCCAAAACTCAATTTTAGGAACTAAAAAAT  644

seq1  CAAAATGAACTGCAACTTACAGAACATAAGGATTTACCTAACTGGTGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAACTGCAACTTACAGAACATAAGGATTTACCTAACTGGTGTAA  694

seq1  CTGGAAATGAAGAAATGGCGCTCGCACACACAAACAGTAAAGATAGGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGAAGAAATGGCGCTCGCACACACAAACAGTAAAGATAGGAGG  744

seq1  GGGACTGGGCCATGTGCTCTAATGGTATACCAGCAACAGCCAAGAAACTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGCCATGTGCTCTAATGGTATACCAGCAACAGCCAAGAAACTC  794

seq1  AGAAGATTGATTTTATACATCTTCACTTAGAAGGTGAAAGAAAGATGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTGATTTTATACATCTTCACTTAGAAGGTGAAAGAAAGATGAAA  844

seq1  TTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTGCTGTTTTTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTGCTGTTTTTTTG  894

seq1  TGAGCCTAGAGGCTGTCTGGGGCTGAGAACAAAGAAAAACAAACTCGGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGAGGCTGTCTGGGGCTGAGAACAAAGAAAAACAAACTCGGGT  944

seq1  ATGCCCCGTAGTTAAAACATCCTGGGAACAGCTTGACCTAAAGATAAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCGTAGTTAAAACATCCTGGGAACAGCTTGACCTAAAGATAAAGA  994

seq1  GGAATGTGAGGACATAACAGGCTATCTGAACTGAGTCAACAACTCACAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGAGGACATAACAGGCTATCTGAACTGAGTCAACAACTCACAGA  1044

seq1  ACTCTGACACCCTGTACGTACATGTAATTTTTCTGCTGATGTTTGAATAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACACCCTGTACGTACATGTAATTTTTCTGCTGATGTTTGAATAA  1094

seq1  GCCAATAGTGTGTCGCTATGCTGAATTC  1125
      ||||||||||||||||||||||||||||
seq2  GCCAATAGTGTGTCGCTATGCTGAATTC  1122

seq1: chr18_88445318_88446359
seq2: B6Ng01-089B17.g_68_1088

seq1  GAATTCTAATTGATGGCTTTCTCAGATGTCTTCAGAACCATTATTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTGATGGCTTTCTCAGATGTCTTCAGAACCATTATTATTCT  50

seq1  GTCTGCAGAGGCCGATAATCTCTGGAAATTTCATGACATCTTCACATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGAGGCCGATAATCTCTGGAAATTTCATGACATCTTCACATCTT  100

seq1  GAGACAGATGTTCTGAAATAATTTTCAATTATGTGTCAGCTTTTGGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGATGTTCTGAAATAATTTTCAATTATGTGTCAGCTTTTGGCAGT  150

seq1  GTGAGGTAGATGGGGAAGAGACAACAGAAAACAGGTTCCAATATGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAGATGGGGAAGAGACAACAGAAAACAGGTTCCAATATGCTGTT  200

seq1  TTATTTCTATTGGGTCTGTCACTTGGAAAGGGCTCTGGAATCTTGGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATTGGGTCTGTCACTTGGAAAGGGCTCTGGAATCTTGGGGGC  250

seq1  AGTTCCTATGGTAGACCCTCTCCCACTAGATATCAGCATTCATCACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTATGGTAGACCCTCTCCCACTAGATATCAGCATTCATCACATGG  300

seq1  GCATGTTTTTTTTTTTGTTTTTTTTTTTTTATCAGAAAAATTAGTTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTTTTTTTTGTTTTTTTTTTTTTATCAGAAAAATTAGTTTGTC  350

seq1  TAGTATGGAGCAATAAACCAGTTATTTTGCATGCTTATTTCCCACTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGGAGCAATAAACCAGTTATTTTGCATGCTTATTTCCCACTTTGA  400

seq1  CAATCATTTTTTGAATTTGTATGTGAGAATTATATGTGAGTAGATAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTTTTTGAATTTGTATGTGAGAATTATATGTGAGTAGATAAGTT  450

seq1  ACAGGTTAAAAAACTTTCCTGAGAGAAGTCCAGGTCTAGTGAGAAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTAAAAAACTTTCCTGAGAGAAGTCCAGGTCTAGTGAGAAAGAAG  500

seq1  CCATGGCTATATTACAGCATGATTAGTGTTGTGATTCCTGGAGAAGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTATATTACAGCATGATTAGTGTTGTGATTCCTGGAGAAGGTTG  550

seq1  TGTTAAATGTGGATCAAAAAAAAAAGATCATCTAAATTCAATTTTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGTGGATCAAAAAAAAAAGATCATCTAAATTCAATTTTTAATG  600

seq1  AGGGAATTTCTTCTGTACAAATTGAGTTTTGAAGGATTAACAGGAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTTCTTCTGTACAAATTGAGTTTTGAAGGATTAACAGGAAAATG  650

seq1  CATCCTAGGAAGGACAAGCACAGGTATAACAGCTGATAGGAGCTGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGGAAGGACAAGCACAGGTATAACAGCTGATAGGAGCTGTGACA  700

seq1  TGCGATGGCAGCTTGGGTTATCAAGGACTATAGCACATTGCTCTGCGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGGCAGCTTGGGTTATCAAGGACTATAGCACATTGCTCTGCGAAT  750

seq1  GGGATAGGGAAGGATAGGGATTTGGCAGCTGCAGCTACACAAAAGAGACC  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGGAAAGATAGGGATTTGGCAGCTGCAGCTACACAAAAGAGACC  800

seq1  TTGACGACTGTTTTGTTGTTGCTTTGGTTTTTGTTTGTTTATTTGTTTTT  850
      |||||||||||||||||| |||||||| ||||||||||||||||| ||||
seq2  TTGACGACTGTTTTGTTG-TGCTTTGG-TTTTGTTTGTTTATTTG-TTTT  847

seq1  TTTTAAGTAAGTCAGCTTGATATCCTGGAGTACTCAAAACAGGGACTTAT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTAAGTAAGTCAGCTTGATATCCTGGAGTACTCAAAACA-GGACTTAT  896

seq1  AAAGGTTCAGGTTATACATTAGAAGGTCACTTCTGGTTCCTAGGTGAGGA  950
      ||||||||||  |||||||||||||  ||| ||||||| ||| |||| ||
seq2  AAAGGTTCAG--TATACATTAGAAG--CAC-TCTGGTT-CTACGTGA-GA  939

seq1  GTGGGGTATGTGTCATTTAACCAACTAGTGTTCCCACCTTCTCTAGACTG  1000
      ||||||||||||||| ||||||||| || ||| |||||||||||||||||
seq2  GTGGGGTATGTGTCA-TTAACCAAC-AG-GTT-CCACCTTCTCTAGACTG  985

seq1  GGATATATCCTAGAAGAGTGAATGAGATGGAACTTTACATCA  1042
      ||||| || |||||||| || ||||||| |||| ||||||||
seq2  GGATA-AT-CTAGAAGA-TG-ATGAGAT-GAAC-TTACATCA  1021