BAC Information

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BAC

Clone NameB6Ng01-089G18
Chromosome18 (Build37)
Map Location 19,405,685 - 19,406,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G18.bB6Ng01-089G18.g
ACCDH902004DH902005
length1,2371,102
definitionDH902004|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G18, 5' end.DH902005|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttccttctttgtgttgtgctgtgtgtgtgtgtgcgcgcatgtgt
gtgtgcacatgctaatgaagggatgggaaagcaagcacattagtaaaatg
ttagtataggccagagatcagtgtccagcattttcttacttgcttttgac
tttagcttttaggacacggtctttcactgaggttagagctgacaaagtca
gctagattggctaacccgtgagttctgaggatctgtttgtcttcctctcc
tctctcattgagctctataagcatcttctagtgtatctggttttcttaca
tgagtcttcttacgtgggctatgggaatttgatattgatacctgatgtca
gacaactttaatgatggaatcatctctccaacatacttttattatgtttg
tatttcattgacccatttttattattttattatattgaaaatacattatt
tcctcaaacaatatatactgattatagtttcccctccctttactcctcac
agttgcttccccttgcactccgtttctgtctctcattagaaaagagcagg
cttctaagagataagaaccaaatttaacaaaataaaatataataagatta
gacaaaactattatataaaaattggaaaaggtaacagagcaaagagaaag
aattccaagaccacgcacaaaacttacttgttctcatacaaggagtccca
taaaaatactaatctaatagctgtaacatatatgcagaggacctgataca
catcaatgtagtacctttgctttctgtttcagtgttggtgagctcatatg
tgccttctttagcttattcagaggaccttgttcttctggtatcactcatc
gcctctggctcataaatttttctgcctcttcttcctttgaaagtcattga
gctctgaagtaagggactggatggttgacttccatttatattctctgtgg
aatgtctggctgtgggtgtctgcatttgttcccatctgctgctggaagaa
tcctctatatgatgactagataagaaaattgtgctacagatatgccagat
attcattaggaatcattgctgatgccgaggtgcaacgtgtcacaatacct
attggaaatcaattttgttgagttctccgaaaagggcaatgtctacctca
gaccactgtgaccacctctgggcaattactaaaagagtctgtttctcaca
atggcacttgttcacaggtttctttttgggtatcagt
gaattctctactacatacttttaatcccaagcaattatgtctaattgagg
gacagacaatttggcaaatcagagaaatatttgacagaatgagtcagagg
tagcatatacccaactctcaggagaaaagctgtttaaagacatcataggg
ggactaaaggcagttctgttcagtcaattgtaagtgccatgagtatagta
gagtcgtgtttgttcatgaattcatccagttcagtgaatgtcagcagagg
cagttgaagccatagattaagaaggagccaaaagattgcaacacattacc
acaaccaatttgaagccaaacaaagcaattcagtcagagacttagagaag
gcagatcgatcaggaagcttgggaagaagtttgagctggaccaggcagcc
agagttcagaaagagattgaaagaatgagcttagtcagcagtgaccgtct
gtcactacaactactcaagaggaataaaagtaacttttatattctaactt
ttatattctgtgtttccaaaaacggcctcttcactttcctagaattcctt
tttatgtctacctatttataaagctctctatctcttcctccctccccctc
tctttctctctctctcttccccctttgccccctttcctgtctccctccct
cctttatatttcttcagctattcatgctttcattgttctatgaaggagtt
ttcaagaccaagatcgctgtttttgatccatgtgtttgtatatttcccct
agggttttatagtacttttctcattttacaatgtgcatagctatttttaa
ctgtggggtagacattttatttcaaaagttttataatttgttttacattt
tttggaaggtgctaagtttttctgtagaatttaggagttttctgagatta
atttcaaagacttaatttccattttaccaagcttctgacttttgaatgtg
cctctaagctggaagtatttacactgaaatctgtaaaccctggataacac
actgtttaatctttgtgtttcaaagatcattcaactccttgggtataatg
attggtttataatgaagccgtgcctgtggaagggaatataggtaacagca
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19405685_19406787
seq2: B6Ng01-089G18.g_68_1169

seq1  GAATTCTCTACTACATACTTTTAATCCCAAGCAATTATGTCTAATTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTACATACTTTTAATCCCAAGCAATTATGTCTAATTGAGG  50

seq1  GACAGACAATTTGGCAAATCAGAGAAATATTTGACAGAATGAGTCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAATTTGGCAAATCAGAGAAATATTTGACAGAATGAGTCAGAGG  100

seq1  TAGCATATACCCAACTCTCAGGAGAAAAGCTGTTTAAAGACATCATAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATACCCAACTCTCAGGAGAAAAGCTGTTTAAAGACATCATAGGG  150

seq1  GGACTAAAGGCAGTTCTGTTCAGTCAATTGTAAGTGCCATGAGTATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAGGCAGTTCTGTTCAGTCAATTGTAAGTGCCATGAGTATAGTA  200

seq1  GAGTCGTGTTTGTTCATGAATTCATCCAGTTCAGTGAATGTCAGCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGTGTTTGTTCATGAATTCATCCAGTTCAGTGAATGTCAGCAGAGG  250

seq1  CAGTTGAAGCCATAGATTAAGAAGGAGCCAAAAGATTGCAACACATTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGCCATAGATTAAGAAGGAGCCAAAAGATTGCAACACATTACC  300

seq1  ACAACCAATTTGAAGCCAAACAAAGCAATTCAGTCAGAGACTTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAATTTGAAGCCAAACAAAGCAATTCAGTCAGAGACTTAGAGAAG  350

seq1  GCAGATCGATCAGGAAGCTTGGGAAGAAGTTTGAGCTGGACCAGGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCGATCAGGAAGCTTGGGAAGAAGTTTGAGCTGGACCAGGCAGCC  400

seq1  AGAGTTCAGAAAGAGATTGAAAGAATGAGCTTAGTCAGCAGTGACCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAGAAAGAGATTGAAAGAATGAGCTTAGTCAGCAGTGACCGTCT  450

seq1  GTCACTACAACTACTCAAGAGGAATAAAAGTAACTTTTATATTCTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTACAACTACTCAAGAGGAATAAAAGTAACTTTTATATTCTAACTT  500

seq1  TTATATTCTGTGTTTCCAAAAACGGCCTCTTCACTTTCCTAGAATTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTGTGTTTCCAAAAACGGCCTCTTCACTTTCCTAGAATTCCTT  550

seq1  TTTATGTCTACCTATTTATAAAGCTCTCTATCTCTTCCTCCCTCCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCTACCTATTTATAAAGCTCTCTATCTCTTCCTCCCTCCCCCTC  600

seq1  TCTTTCTCTCTCTCTCTTCCCCCTTTGCCCCCTTTCCTGTCTCCCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTCTCTCTTCCCCCTTTGCCCCCTTTCCTGTCTCCCTCCCT  650

seq1  CCTTTATATTTCTTCAGCTATTCATGCTTTCATTGTTCTATGAAGGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATTTCTTCAGCTATTCATGCTTTCATTGTTCTATGAAGGAGTT  700

seq1  TTCAAGACCAAGATCGCTGTTTTTGATCCATGTGTTTGTATATTTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCAAGATCGCTGTTTTTGATCCATGTGTTTGTATATTTCCCCT  750

seq1  AGGGTTTTATAGTACTTTTCTCATTTTACAATGTGCATAGCTATTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTATAGTACTTTTCTCATTTTACAATGTGCATAGCTATTTTTAA  800

seq1  CTGTGGGGTAGACATTTTATTTCAAAAGTTTTATAATTTGTTTTACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGTAGACATTTTATTTCAAAAGTTTTATAATTTGTTTTACATTT  850

seq1  TTTGGAAGGTGCTAAGTTTTTCTGTAGAATTTAGGAGTTTTCTGAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGGTGCTAAGTTTTTCTGTAGAATTTAGGAGTTTTCTGAGATTA  900

seq1  ATTTCAAAGACTTAATTTCCATTTTACCAAGCTTCTGACTTTTGAATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGACTTAATTTCCATTTTACCAAGCTTCTGACTTTTGAATGTG  950

seq1  CCTTCTAAGCTGGAAGTATTTACACTGAAATCTGTAAAACCCTGGATAAC  1000
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CC-TCTAAGCTGGAAGTATTTACACTGAAATCTGT-AAACCCTGGATAAC  998

seq1  ACACTGTTTTATCTTTGTTGTTTCAAAG-TCATTCAAACTCTTGGTTATT  1049
      ||||||||| ||||||| |||||||||| ||||||||   ||||| ||| 
seq2  ACACTGTTTAATCTTTG-TGTTTCAAAGATCATTCAACTCCTTGGGTATA  1047

seq1  ATGATTGTTTTATAATGAGCCAGTGCCTGTGG-AGGGAATATAGGTAACA  1098
      ||||||| ||||||||||  | |||||||||| |||||||||||||||||
seq2  ATGATTGGTTTATAATGAAGCCGTGCCTGTGGAAGGGAATATAGGTAACA  1097

seq1  GCAGG  1103
      |||||
seq2  GCAGG  1102