BAC Information

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BAC

Clone NameB6Ng01-090H15
Chromosome18 (Build37)
Map Location 27,913,786 - 28,081,584
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H15.bB6Ng01-090H15.g
ACCDH902766DH902767
length1,1711,163
definitionDH902766|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H15, 5' end.DH902767|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,913,786 - 27,914,976)(28,080,422 - 28,081,584)
sequence
gaattccattgagaaacgcacttttcatcttagaactcatggaacgaaca
ttcatgtaggttgaccatgtttccaccaacagtgcatttattcctggtgt
tcctggcttcctaacccatagaactggatactgtttctactgctttgagt
agaacttttaaagtccaaagtctaaagtttgacttaaataaaatactatg
taacattcaactctctgcttattatacctttgcttactgaccaaactaat
tgtgtttagatacttgacacttgaagtaaagaacctcttttgaggcgcat
ctttcaggcttgattgtactgttatggtatgagctgtctaccccatagct
tggttaaatgtgactgtcttcttagaatctttctacttggaggctccagc
taaaggtgtctgtcttttggtttgaatcaaaccatcacctctacttatcc
caaagtacctctgccaacggatacttgatttttttatacgtagcaaatat
aattgtaataattatattatatatgtatatgtaatatgttgtatgtccag
tattaactgatttaacattttatatacagattatgctataaagtaatatg
aaggcatgccttgagagatagaaatagaaggaatttacaaaacttaattg
ttttatgctatagatcatagacctggcacagtacagaagcaggaaagcat
ctcaccttttattccctctttgctaagggtctgcatgtatgctctcggtt
agggattattgtagataaagaagtgaatagacatgaggcagattgtatta
aaatttgacaggcaggtatctttaacattttcaggaataacttgaaactt
tctatattttaaatttctttttattatttatcctctcatatatatatcct
gactatagtctgtccttgctccctgtgcccataaccttctccatcttctt
cctccctatccactcctccttcatttcccatacaaaaaagtataggtctc
acagagatttcaagtcaatgtgtatatcagttaccactgcctttctatta
gactgtcaagcaaccccgtaaaagtacaaggttcttcaaagcaggcaagt
atcgatcgaccaggctccctctccttagagttcccaaaatgaccaagctg
tcaagtactgtaacattatag
gaattctgcaggagtccatgagtttctcaaggaagctgtcttctgtgtgg
ctactctgccactcagatgggctccgtttcttaaaagaaaattctgttga
aaaaagaaaacaagttttctgacagaactttaggtccactctgcttacta
ctgttatttaggaaaatggaaacactgtgaagttctatttatacttgtag
acaaatggcattctaagccttgactagagaagtttcttttcctcatgaac
agttgagaagactgcacaaaatgctgacaacaaatgagagttgagtgatc
agatgtacacaagacaatcatagcattccttctaagaacccaacaccatt
acagaaaatgtggtagagagaacatggaaggcagagataagaatagagct
ataaaatatcatcttgtggacaagacaaactcattgcaacataaactcag
atcagctgtgaatgctgcaaaaagaaagtgctcactgattgtcaggcaat
gtgggagttggtgactgggttgaggaaatggatctaccctctctgatgaa
ttatatgcttctggaggtctcagggacaaggaactcatcaccttcagctt
ctgacccaatgtggactttttcaacttccagtgaacgctaatgttcacat
ggctagccctggttaaactaaatttgttgcaaaagaaaaccaacagtcat
gaagctaataaggaaatgaggaagataatatgggtagagagaggaaacta
atcatgatgcattgtcaataaacaaaattaataataaaaatatttttgga
caatatatgtgtgaaagtaggggagagacagagaaagggagaaccgagag
agatagagagagagagagaaagagagagagagagagagagaaagagagag
agagttaccagcactactgcacccctcatgctgaaggtgggggagaaagg
acatcatatatactgccctcaggctgcttagttcaggcaatctcttatcc
tccagttcagagagttggtattacacatgcacccgagttactgcttcttt
atgtaagggactggatattgaactcagttctcctgcctcattctcatcca
ctctgccatctgtctagcgcccgtcgttcatatgccaaataaacttaaag
acaaagaatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27913786_27914976
seq2: B6Ng01-090H15.b_45_1215

seq1  GAATTCCATTGAGAAACGCACTTTTCATCTTAGAACTCATGGAACGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGAGAAACGCACTTTTCATCTTAGAACTCATGGAACGAACA  50

seq1  TTCATGTAGGTTGACCATGTTTCCACCAACAGTGCATTTATTCCTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAGGTTGACCATGTTTCCACCAACAGTGCATTTATTCCTGGTGT  100

seq1  TCCTGGCTTCCTAACCCATAGAACTGGATACTGTTTCTACTGCTTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTCCTAACCCATAGAACTGGATACTGTTTCTACTGCTTTGAGT  150

seq1  AGAACTTTTAAAGTCCAAAGTCTAAAGTTTGACTTAAATAAAATACTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTAAAGTCCAAAGTCTAAAGTTTGACTTAAATAAAATACTATG  200

seq1  TAACATTCAACTCTCTGCTTATTATACCTTTGCTTACTGACCAAACTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAACTCTCTGCTTATTATACCTTTGCTTACTGACCAAACTAAT  250

seq1  TGTGTTTAGATACTTGACACTTGAAGTAAAGAACCTCTTTTGAGGCGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGATACTTGACACTTGAAGTAAAGAACCTCTTTTGAGGCGCAT  300

seq1  CTTTCAGGCTTGATTGTACTGTTATGGTATGAGCTGTCTACCCCATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGCTTGATTGTACTGTTATGGTATGAGCTGTCTACCCCATAGCT  350

seq1  TGGTTAAATGTGACTGTCTTCTTAGAATCTTTCTACTTGGAGGCTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAATGTGACTGTCTTCTTAGAATCTTTCTACTTGGAGGCTCCAGC  400

seq1  TAAAGGTGTCTGTCTTTTGGTTTGAATCAAACCATCACCTCTACTTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTCTGTCTTTTGGTTTGAATCAAACCATCACCTCTACTTATCC  450

seq1  CAAAGTACCTCTGCCAACGGATACTTGATTTTTTTATACGTAGCAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACCTCTGCCAACGGATACTTGATTTTTTTATACGTAGCAAATAT  500

seq1  AATTGTAATAATTATATTATATATGTATATGTAATATGTTGTATGTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATAATTATATTATATATGTATATGTAATATGTTGTATGTCCAG  550

seq1  TATTAACTGATTTAACATTTTATATACAGATTATGCTATAAAGTAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTGATTTAACATTTTATATACAGATTATGCTATAAAGTAATATG  600

seq1  AAGGCATGCCTTGAGAGATAGAAATAGAAGGAATTTACAAAACTTAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGCCTTGAGAGATAGAAATAGAAGGAATTTACAAAACTTAATTG  650

seq1  TTTTATGCTATAGATCATAGACCTGGCACAGTACAGAAGCAGGAAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTATAGATCATAGACCTGGCACAGTACAGAAGCAGGAAAGCAT  700

seq1  CTCACCTTTTATTCCCTCTTTGCTAAGGGTCTGCATGTATGCTCTCGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTTTATTCCCTCTTTGCTAAGGGTCTGCATGTATGCTCTCGGTT  750

seq1  AGGGATTATTGTAGATAAAGAAGTGAATAGACATGAGGCAGATTGTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTATTGTAGATAAAGAAGTGAATAGACATGAGGCAGATTGTATTA  800

seq1  AAATTTGACAGGCAGGTATCTTTAACATTTTCAGGAATAACTTGAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGACAGGCAGGTATCTTTAACATTTTCAGGAATAACTTGAAACTT  850

seq1  TCTATAATTTTAAATTTCTTTTTATTAATTTATCCTCTCATATATTATAT  900
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  TCTAT-ATTTTAAATTTCTTTTTATT-ATTTATCCTCTCATATA-TATAT  897

seq1  CCTGACTATAGTCTGTCCTTGCTCCCTGTGCCCATAACCTTCTCCATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTATAGTCTGTCCTTGCTCCCTGTGCCCATAACCTTCTCCATCTT  947

seq1  CTTCCTCCCTATCCACTCCTCCTTCATTTCCCATACAAAAAAGTATAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCTATCCACTCCTCCTTCATTTCCCATACAAAAAAGTATAGGT  997

seq1  CTCACAGAGATTTCAAGTCAAATGTGGTATATCAAGTTACCACTGCCTTT  1050
      ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
seq2  CTCACAGAGATTTCAAGTC-AATGT-GTATATC-AGTTACCACTGCCTTT  1044

seq1  CATATTAAGACTGGTCAAAGCAACCCCGTAGAAGTACAAGGGTTCTCCAA  1100
      | |||| ||||| ||| ||||||||||||| |||||||| |||||| |||
seq2  C-TATT-AGACT-GTC-AAGCAACCCCGTAAAAGTACAA-GGTTCTTCAA  1089

seq1  AGCAGGCAAAAGTATCAGAAACAGACCATGCTCCTCCTCTTAGGAGTCCC  1150
      |||||||  |||||||    |  ||||| |||||  ||| |  |||| ||
seq2  AGCAGGC--AAGTATC---GATCGACCAGGCTCCCTCTCCTTAGAGTTCC  1134

seq1  ACAAAATGACCAAGCTGTACAAGTAACTGTAACATATATAG  1191
       ||||||||||||||||| ||||| |||||||||| |||||
seq2  -CAAAATGACCAAGCTGT-CAAGT-ACTGTAACAT-TATAG  1171

seq1: chr18_28080422_28081584
seq2: B6Ng01-090H15.g_71_1233 (reverse)

seq1  TGACATCTTTTGTCTTTTAGTTTTATTGTGCATATGAAACGACAGAGGGG  50
      ||||||  ||||||||| || ||||||  ||||||| ||||||   ||| 
seq2  TGACATTCTTTGTCTTTAAG-TTTATTTGGCATATG-AACGAC---GGGC  45

seq1  CTTAGACAGATGGCAGAGTGGATGAGAATGAGCAGGGAGAACTGAGTTC-  99
        ||||||||||||||||||||||||||||||   |||||||||||||| 
seq2  GCTAGACAGATGGCAGAGTGGATGAGAATGAGGCAGGAGAACTGAGTTCA  95

seq1  ATATCCCAGTCCC-TACATAAAGAAGCAGTAACTCCGTGTGCATGTGTAA  148
      |||| |||||||| |||||||||||||||||||| || ||||||||||||
seq2  ATAT-CCAGTCCCTTACATAAAGAAGCAGTAACT-CGGGTGCATGTGTAA  143

seq1  TACCAACTCTCTGAACTGGA-GATAAGAAGATTGCCTG-ACT-AGCAGCC  195
      |||||||||||||||||||| |||||| |||||||||| ||| |||||||
seq2  TACCAACTCTCTGAACTGGAGGATAAG-AGATTGCCTGAACTAAGCAGCC  192

seq1  TGAGGGCAGTATATATGATGTCCTTTCT-CCCCACCTTCAGCATGA-GTG  243
      |||||||||||||||||||||||||||| ||||||||||||||||| | |
seq2  TGAGGGCAGTATATATGATGTCCTTTCTCCCCCACCTTCAGCATGAGGGG  242

seq1  TGCAGTAGTGCTTGTTATCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCT  293
      ||||||||||| || || ||||||||||||||||||||||||||||||||
seq2  TGCAGTAGTGC-TGGTAACTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCT  291

seq1  CTTTCTCTCTCTCTCTCTTTCTCTCTCTGTTCTCCC-TTCTCTGTCTCTC  342
      |||||||||||||||||| |||||||| |||||||| |||||||||||||
seq2  CTTTCTCTCTCTCTCTCTATCTCTCTCGGTTCTCCCTTTCTCTGTCTCTC  341

seq1  CCCTACTTTCACACATATATTGTCC-AAAATATTTTTATTATTAATTTTG  391
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTACTTTCACACATATATTGTCCAAAAATATTTTTATTATTAATTTTG  391

seq1  TTTATTGACAATGCATCATGATTAGTTTCCTCTCTCTACCCATATTATCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGACAATGCATCATGATTAGTTTCCTCTCTCTACCCATATTATCT  441

seq1  TCCTCATTTCCTTATTAGCTTCATGACTGTTGGTTTTCTTTTGCAACAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTTCCTTATTAGCTTCATGACTGTTGGTTTTCTTTTGCAACAAA  491

seq1  TTTAGTTTAACCAGGGCTAGCCATGTGAACATTAGCGTTCACTGGAAGTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTAACCAGGGCTAGCCATGTGAACATTAGCGTTCACTGGAAGTT  541

seq1  GAAAAAGTCCACATTGGGTCAGAAGCTGAAGGTGATGAGTTCCTTGTCCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCCACATTGGGTCAGAAGCTGAAGGTGATGAGTTCCTTGTCCC  591

seq1  TGAGACCTCCAGAAGCATATAATTCATCAGAGAGGGTAGATCCATTTCCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTCCAGAAGCATATAATTCATCAGAGAGGGTAGATCCATTTCCT  641

seq1  CAACCCAGTCACCAACTCCCACATTGCCTGACAATCAGTGAGCACTTTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGTCACCAACTCCCACATTGCCTGACAATCAGTGAGCACTTTCT  691

seq1  TTTTGCAGCATTCACAGCTGATCTGAGTTTATGTTGCAATGAGTTTGTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGCATTCACAGCTGATCTGAGTTTATGTTGCAATGAGTTTGTCT  741

seq1  TGTCCACAAGATGATATTTTATAGCTCTATTCTTATCTCTGCCTTCCATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAAGATGATATTTTATAGCTCTATTCTTATCTCTGCCTTCCATG  791

seq1  TTCTCTCTACCACATTTTCTGTAATGGTGTTGGGTTCTTAGAAGGAATGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTACCACATTTTCTGTAATGGTGTTGGGTTCTTAGAAGGAATGC  841

seq1  TATGATTGTCTTGTGTACATCTGATCACTCAACTCTCATTTGTTGTCAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGTCTTGTGTACATCTGATCACTCAACTCTCATTTGTTGTCAGC  891

seq1  ATTTTGTGCAGTCTTCTCAACTGTTCATGAGGAAAAGAAACTTCTCTAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCAGTCTTCTCAACTGTTCATGAGGAAAAGAAACTTCTCTAGT  941

seq1  CAAGGCTTAGAATGCCATTTGTCTACAAGTATAAATAGAACTTCACAGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTAGAATGCCATTTGTCTACAAGTATAAATAGAACTTCACAGTG  991

seq1  TTTCCATTTTCCTAAATAACAGTAGTAAGCAGAGTGGACCTAAAGTTCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTCCTAAATAACAGTAGTAAGCAGAGTGGACCTAAAGTTCTG  1041

seq1  TCAGAAAACTTGTTTTCTTTTTTCAACAGAATTTTCTTTTAAGAAACGGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAACTTGTTTTCTTTTTTCAACAGAATTTTCTTTTAAGAAACGGA  1091

seq1  GCCCATCTGAGTGGCAGAGTAGCCACACAGAAGACAGCTTCCTTGAGAAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCTGAGTGGCAGAGTAGCCACACAGAAGACAGCTTCCTTGAGAAA  1141

seq1  CTCATGGACTCCTGCAGAATTC  1163
      ||||||||||||||||||||||
seq2  CTCATGGACTCCTGCAGAATTC  1163