BAC Information

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BAC

Clone NameB6Ng01-090M24
Chromosome18 (Build37)
Map Location 79,381,777 - 79,514,447
singlet/doubletdoublet
Overlap geneLOC100039242
Upstream geneSlc14a2, EG620155, Setbp1
Downstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M24.bB6Ng01-090M24.g
ACCDH903015DH903016
length1,023957
definitionDH903015|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M24, 5' end.DH903016|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,381,777 - 79,382,784)(79,513,485 - 79,514,447)
sequence
gaattccaaaaggccaatgggaatagttaaggccttgtgctggcactagc
ttcatgatttattaactacagtaaaatgtctcatggggggggggttcatt
gctagactcctgatgtcttcatacaagcatttgtatgtatagatacattt
gttttgttctgttaagtgtaaggttatttatttacttatttatttttaca
tggattggtgtttttcttacatgcatgtctgtgtgagggtatcagatccc
tgggaactggagccacatacagttgtgagctgctatgtgggtgtggtgaa
ttgaacctgggtcctctggaagatcagccagtgtgctcttaaccacagag
ccatctctgcagtccagggtaagttcttaagtcacatgttcaacaagttt
acatcagcctttctagctggaacaacaaacacccccttaaagctttctga
ctcttagttcacctgcggagtttgcgaatgattctcatcctcgcatatgt
agcgtcttgggtccttttatgttcaccatgggatcttttggagtcctctg
ctcaacacttttgcatccagccagatactgatattaatgcagtaagtgtg
aatgagtgcataaggatactttagggcatgcaaaatgctgacatagcttt
ttgccaacactgcattagtcaggattcaggcacatatcttcaatttttat
tcaagaactgaagaagaagaaaaaaacaaaaggttattctggtgcccagg
aggcaaaatgggcatgctttgttggttttttttctttttttttgaataat
caagaataatttttgctattaaagtggttagtcataaacgctcagaaagt
cttacttttggttttccattgggacatggtaaggttttcaggggggatgg
ttagaatgggaatagagcacatttctcagatatggatgctaggattctgc
tctctttagatctagctgaagttctgagcactctctcagatcctctccac
tatctctctgctgagacataaag
gaattcatccatgacactgtaaacccagttaaaaaaaatcagtgactgac
actgtgtgagactatgcatggattaaatcccagctgtcacatagtgacat
ataagtacatgacatttttaaaatataaaaattaataataaaatatgggt
caagcaggttatattagaaacatgtgtatacatttacatacaatcatgta
acaacaattaatgaataaatactagtgaggtgcatgtgagagggctcaga
gggagtagcaagaagggagaacattatgttctcaaataaaatgaaatata
tatgtgtcgtttgtttgtgatatttaacttagcttatttaaactcaatag
caagttacactgtgagtatgagagtttaaagaaaagtgatcaaccataaa
gtagatatcctcaaagacaaatcaataaataatctttcccttaaacatct
tctgccaactgaaacacagatgttctatttagcttgttacttcataaaaa
tgtgttgactgtcttcttggaattctccatttcagtgtattgaattccca
aattagaatttttagattcaatggctcctgtcagcaagctcttgctggca
tccacaatagtgtctgggtttggtggttgtatatgggatggatccccagg
ttggacagtctctgggatggtcattccttcagtctctgctgcaccctttg
tctctgtaactcctttccatgggtattttgttttccccatctcagaagat
cgaagtacccacactttcgtcttccttcttcttgagtttcatgtgttttg
cgaattgcatctgggtactctggagctgtcttctgagaggtctgccagtg
cctgacaaatacagaagtggatgctcacagtcatccattggatggacaca
gggtcccaatgaggtgctgagtaagtactcagatctgaatgggttgcagc
cccctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79381777_79382784
seq2: B6Ng01-090M24.b_46_1068

seq1  GAATTCCAAAAGGCCAATGGGAATAGTTAAGGCCTTGTGCTGGCACTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGGCCAATGGGAATAGTTAAGGCCTTGTGCTGGCACTAGC  50

seq1  TTCATGATTTATTAACTACAGTAAAATGTCTCATGGGGGGGGGGTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTTATTAACTACAGTAAAATGTCTCATGGGGGGGGGGTTCATT  100

seq1  GCTAGACTCCTGATGTCTTCATACAAGCATTTGTATGTATAGATACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTCCTGATGTCTTCATACAAGCATTTGTATGTATAGATACATTT  150

seq1  GTTTTGTTCTGTTAAGTGTAAGGTTATTTATTTACTTATTTATTTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCTGTTAAGTGTAAGGTTATTTATTTACTTATTTATTTTTACA  200

seq1  TGGATTGGTGTTTTTCTTACATGCATGTCTGTGTGAGGGTATCAGATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGTGTTTTTCTTACATGCATGTCTGTGTGAGGGTATCAGATCCC  250

seq1  TGGGAACTGGAGCCACATACAGTTGTGAGCTGCTATGTGGGTGTGGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGGAGCCACATACAGTTGTGAGCTGCTATGTGGGTGTGGTGAA  300

seq1  TTGAACCTGGGTCCTCTGGAAGATCAGCCAGTGTGCTCTTAACCACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTGGGTCCTCTGGAAGATCAGCCAGTGTGCTCTTAACCACAGAG  350

seq1  CCATCTCTGCAGTCCAGGGTAAGTTCTTAAGTCACATGTTCAACAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGCAGTCCAGGGTAAGTTCTTAAGTCACATGTTCAACAAGTTT  400

seq1  ACATCAGCCTTTCTAGCTGGAACAACAAACACCCCCTTAAAGCTTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCCTTTCTAGCTGGAACAACAAACACCCCCTTAAAGCTTTCTGA  450

seq1  CTCTTAGTTCACCTGCGGAGTTTGCGAATGATTCTCATCCTCGCATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTTCACCTGCGGAGTTTGCGAATGATTCTCATCCTCGCATATGT  500

seq1  AGCGTCTTGGGTCCTTTTATGTTCACCATGGGATC-TTTGGAGTCCTCTG  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCGTCTTGGGTCCTTTTATGTTCACCATGGGATCTTTTGGAGTCCTCTG  550

seq1  CTCAACAC-TTTGCATCCAGCCAGATACTGATA-TAATGCAGTAAGTGTG  597
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAACACTTTTGCATCCAGCCAGATACTGATATTAATGCAGTAAGTGTG  600

seq1  AATGAGTGCAT-AGGATACTTTAGGGCATGC-AAATGCTGACATAGC-TT  644
      ||||||||||| ||||||||||||||||||| ||||||||||||||| ||
seq2  AATGAGTGCATAAGGATACTTTAGGGCATGCAAAATGCTGACATAGCTTT  650

seq1  CTGCCAACACTGCATTAGTCA-GAATCAGGCACATATC-TCCATTTATAT  692
       |||||||||||||||||||| || ||||||||||||| || |||| |||
seq2  TTGCCAACACTGCATTAGTCAGGATTCAGGCACATATCTTCAATTTTTAT  700

seq1  TCAAGAACTGAAGAAGAAG-AAAAAACACA--GTTATCCTGTTGCCCA-G  738
      ||||||||||||||||||| |||||||| |  ||||| ||| |||||| |
seq2  TCAAGAACTGAAGAAGAAGAAAAAAACAAAAGGTTATTCTGGTGCCCAGG  750

seq1  AGGCAAA--TGGCATGCTTTGTTGGTTTTTT---CTTTTTTTTGAATAAT  783
      |||||||   |||||||||||||||||||||    |||||||||||||||
seq2  AGGCAAAATGGGCATGCTTTGTTGGTTTTTTTTCTTTTTTTTTGAATAAT  800

seq1  C-AGAATAATTTCTGCTA-TAAAGT-GTTAGTCATAAACGCTCAGAAAGT  830
      | |||||||||| ||||| |||||| ||||||||||||||||||||||||
seq2  CAAGAATAATTTTTGCTATTAAAGTGGTTAGTCATAAACGCTCAGAAAGT  850

seq1  CTTAC-TTTGGTTTTCCATTGGGACATGGTAAGGTTTTCAGGGGTGGATG  879
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTACTTTTGGTTTTCCATTGGGACATGGTAAGGTTTTCAGGGG-GGATG  899

seq1  GTTAGAAT-GGAATAGAGCACATTTCTCCAGAATATGGATGCTA-GATTC  927
      |||||||| |||||||||||||||||| ||| |||||||||||| |||||
seq2  GTTAGAATGGGAATAGAGCACATTTCT-CAG-ATATGGATGCTAGGATTC  947

seq1  TGCTCTCTTTAGAATCTTAGCTG-AGGTCTGAGCACTCTCTCAGAATCCC  976
      |||||||||||| ||| |||||| || ||||||||||||||||||   ||
seq2  TGCTCTCTTTAG-ATC-TAGCTGAAGTTCTGAGCACTCTCTCAGA--TCC  993

seq1  TCTCACACTATCTCTCTGCTGAGAACATAAAG  1008
      |||| |||||||||||||||||| ||||||||
seq2  TCTC-CACTATCTCTCTGCTGAG-ACATAAAG  1023

seq1: chr18_79513485_79514447
seq2: B6Ng01-090M24.g_71_1027 (reverse)

seq1  CTAGGGGGCTGCAAACCCCTTCAGATCCTTGGGTACTTTCTCTAGCTCCT  50
      |||||||||||| ||||| ||||||||  || |||||| ||| ||| || 
seq2  CTAGGGGGCTGC-AACCCATTCAGATC--TGAGTACTTACTC-AGCACC-  45

seq1  TCATTGGGGACCCTGTGTTCCATCCAATGGATGACTGTGAGCATCCACTT  100
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATT-GGGACCCTGTG-TCCATCCAATGGATGACTGTGAGCATCCACTT  93

seq1  CTGTATTTGTCAGGCACTGGCAGAACCTCTCAGAAGACAGCT-CAGAGTA  149
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CTGTATTTGTCAGGCACTGGCAG-ACCTCTCAGAAGACAGCTCCAGAGTA  142

seq1  CCCAAGATGCAATTCGCAAAACACATGAAACTCAAGAAGAAGGAAGACGA  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCC-AGATGCAATTCGCAAAACACATGAAACTCAAGAAGAAGGAAGACGA  191

seq1  AAGTGTGGGTACTTCGATCTTTCTGAGAT-GGGAAAACAAAATACCCATG  248
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AAGTGTGGGTACTTCGATC-TTCTGAGATGGGGAAAACAAAATACCCATG  240

seq1  G-AAGGAGTTACAGAGACAAAGGGTGCAGCAGAGACTGAAGGAATGACCA  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTTACAGAGACAAAGGGTGCAGCAGAGACTGAAGGAATGACCA  290

seq1  T-CCAGAGACTGTCCAACCTGGGGATCCATCCCATATACAACCACCAAAC  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGACTGTCCAACCTGGGGATCCATCCCATATACAACCACCAAAC  340

seq1  CCAGACACTATTGTGGATGCCAGCAAGAGCTTGCTGACAGGAGCCATTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACTATTGTGGATGCCAGCAAGAGCTTGCTGACAGGAGCCATTGA  390

seq1  ATCTAAAAATTCTAATTTGGGAATTCAATACACTGAAATGGAGAATTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAATTCTAATTTGGGAATTCAATACACTGAAATGGAGAATTCCA  440

seq1  AGAAGACAGTCAACACATTTTTATGAAGTAACAAGCTAAATAGAACATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGTCAACACATTTTTATGAAGTAACAAGCTAAATAGAACATCT  490

seq1  GTGTTTCAGTTGGCAGAAGATGTTTAAGGGAAAGATTATTTATTGATTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCAGTTGGCAGAAGATGTTTAAGGGAAAGATTATTTATTGATTTG  540

seq1  TCTTTGAGGATATCTACTTTATGGTTGATCACTTTTCTTTAAACTCTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGATATCTACTTTATGGTTGATCACTTTTCTTTAAACTCTCAT  590

seq1  ACTCACAGTGTAACTTGCTATTGAGTTTAAATAAGCTAAGTTAAATATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGTGTAACTTGCTATTGAGTTTAAATAAGCTAAGTTAAATATCA  640

seq1  CAAACAAACGACACATATATATTTCATTTTATTTGAGAACATAATGTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACGACACATATATATTTCATTTTATTTGAGAACATAATGTTCT  690

seq1  CCCTTCTTGCTACTCCCTCTGAGCCCTCTCACATGCACCTCACTAGTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTGCTACTCCCTCTGAGCCCTCTCACATGCACCTCACTAGTATT  740

seq1  TATTCATTAATTGTTGTTACATGATTGTATGTAAATGTATACACATGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTAATTGTTGTTACATGATTGTATGTAAATGTATACACATGTTT  790

seq1  CTAATATAACCTGCTTGACCCATATTTTATTATTAATTTTTATATTTTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAACCTGCTTGACCCATATTTTATTATTAATTTTTATATTTTAA  840

seq1  AAATGTCATGTACTTATATGTCACTATGTGACAGCTGGGATTTAATCCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATGTACTTATATGTCACTATGTGACAGCTGGGATTTAATCCAT  890

seq1  GCATAGTCTCACACAGTGTCAGTCACTGATTTTTTTTAACTGGGTTTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCTCACACAGTGTCAGTCACTGATTTTTTTTAACTGGGTTTACA  940

seq1  GTGTCATGGATGAATTC  963
      |||||||||||||||||
seq2  GTGTCATGGATGAATTC  957