BAC Information

Click to search

BAC

Clone NameB6Ng01-090N12
Chromosome18 (Build37)
Map Location 70,365,859 - 70,366,953
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68, Rab27b
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N12.bB6Ng01-090N12.g
ACCDH903035DH903036
length1,2361,086
definitionDH903035|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N12, 5' end.DH903036|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagttttatgtttgatgccaaattctttacaaaatgaagtaaat
tttttgctagaacaggatggcccgttatctgccttaataagtttaggcaa
tcccatggcattaaaggcttgtaggcaatgatcaattacatttttggagg
cttctccagtacgcagagaaacaaaaagaaatcttgaacaagtatcaata
caaatgtgcatatattttaattttccaaattctgcataatgagttatatc
catttgccaaatatgattaaggcatgtggcactggagataatgtaataca
tttaggatattgttttacaatcattcttgcctgctccttagtgatcttaa
gtcgaagccttaaggtctgcctagagagatgaaaattttcatgatcacgt
ttggccaaagcaacaggatctgaaattaaggcttctcctattagaactct
gtcgatgcaatcattgccttcagctaaacgtccaggaagaccagaatgag
atcgtatgtggccaatatagaacgggtgttttggggcaagaatgatgttt
tgtaattgtgaaaagagggatcctgctggtgtattaaagttaaaagtacc
acaggtctccaataagggttctgattgtgcaacatataaactattagtaa
aaatattaaaagcctcatgcacagactgaaagacattcagtactgctgtt
aattctgctaattgagctgagaggccaggagtctttatgattacctgttg
attatttataagatatccagctcgccctttagaggagccatcagtaaaca
ccagaacagcattgtgtaagggtagtaaagaggtcatattaggaatatca
cctcatgtacatttaaaattttatcaacctatcttgagggtaatggctgt
ctatagttcttttaaatcctatttgagcagcagccatctgtactatgctg
tttcagccaagtgtcttgacttacgctgtaagctgaacaataatatctgg
ctctttgccaaatagttagtgctgctcctcccatgataatcatctgggct
actgcttcataatatgacaagaaattgcgttagagaatcctcatgtatcc
aatcaagaggactttgtctacatttgtagcatgatcgataaaataaaggt
acgcagaatctatcgcaatgctttaagcttctgtaggcaacctgagtaga
taggaatgaacgactcttgaatacatagggttatcg
gaattctatggatgaggaagactatttttttaaactattcagaaaggtta
atttaaagattctatagagtatccatctgtccatgtgtgggcctttcttc
acccatgtatggatggagtcgttcatgactagaagtgccactctcttaag
acccaaatacttgtttatttatgctcttctggccagaaatgaaatgaaaa
tgacgatagtttggggatggttgcatacccttgaaaatagattgtaaacc
tcatggcttcgtggtggttttaacatgatcttgggtgaactaaatgatgc
tatgattaccttttgggaggttcatattgaaatatgaggaggtaaagtgc
taagatatctacagcttactttggaagtattcagttccctttaccaacag
attgattgtccacaaagtgaatgcagcaaattaatgacaatggtgacacc
gtgtcaagagagaaaccagcatctgttccctctttccagtttttatgttt
ggcctaagtttgtagtttgtgaaatatagtatgatttggaaaatgaatgg
caacacacactcccattggttgaaaaaaaatctattctttaaattctgct
ttaagtgctattatgtgtgcatgcacacacgtaaatgaaacaatcccctc
tacagtgaatttcacctctttaaacagctataatattttgttgttgtcca
ctgaattagcagtttgtcatatcttaataaatgtcttctacctgactgga
tgactggttggttgatttagatttgaaggacaagcatccagtgtctaaac
acagggttttaaggaagtgctagcaccagctgaagtgaccacatgatcac
tttgggtcatttttacacccagagcttcatatttctcctagtgtttcagt
ttctatgtggatatatgttttctaaaaattttagttgttttgggatggga
tatattatgagataaagtctaggtagccatatggcttccaaattcactgt
gctgctaagagctgccttaactcctgatactctacctctcttccttccaa
atgctatgggtttaggtgaggacctactcatcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70365859_70366953
seq2: B6Ng01-090N12.g_68_1153

seq1  GAATTCTATGGATGAGGAAGACTATTTTTTTAAACTATTCAGAAAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGATGAGGAAGACTATTTTTTTAAACTATTCAGAAAGGTTA  50

seq1  ATTTAAAGATTCTATAGAGTATCCATCTGTCCATGTGTGGGCCTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGATTCTATAGAGTATCCATCTGTCCATGTGTGGGCCTTTCTTC  100

seq1  ACCCATGTATGGATGGAGTCGTTCATGACTAGAAGTGCCACTCTCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTATGGATGGAGTCGTTCATGACTAGAAGTGCCACTCTCTTAAG  150

seq1  ACCCAAATACTTGTTTATTTATGCTCTTCTGGCCAGAAATGAAATGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATACTTGTTTATTTATGCTCTTCTGGCCAGAAATGAAATGAAAA  200

seq1  TGACGATAGTTTGGGGATGGTTGCATACCCTTGAAAATAGATTGTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATAGTTTGGGGATGGTTGCATACCCTTGAAAATAGATTGTAAACC  250

seq1  TCATGGCTTCGTGGTGGTTTTAACATGATCTTGGGTGAACTAAATGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTCGTGGTGGTTTTAACATGATCTTGGGTGAACTAAATGATGC  300

seq1  TATGATTACCTTTTGGGAGGTTCATATTGAAATATGAGGAGGTAAAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTACCTTTTGGGAGGTTCATATTGAAATATGAGGAGGTAAAGTGC  350

seq1  TAAGATATCTACAGCTTACTTTGGAAGTATTCAGTTCCCTTTACCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATCTACAGCTTACTTTGGAAGTATTCAGTTCCCTTTACCAACAG  400

seq1  ATTGATTGTCCACAAAGTGAATGCAGCAAATTAATGACAATGGTGACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGTCCACAAAGTGAATGCAGCAAATTAATGACAATGGTGACACC  450

seq1  GTGTCAAGAGAGAAACCAGCATCTGTTCCCTCTTTCCAGTTTTTATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGAGAGAAACCAGCATCTGTTCCCTCTTTCCAGTTTTTATGTTT  500

seq1  GGCCTAAGTTTGTAGTTTGTGAAATATAGTATGATTTGGAAAATGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGTTTGTAGTTTGTGAAATATAGTATGATTTGGAAAATGAATGG  550

seq1  CAACACACACTCCCATTGGTTGAAAAAAAATCTATTCTTTAAATTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACACTCCCATTGGTTGAAAAAAAATCTATTCTTTAAATTCTGCT  600

seq1  TTAAGTGCTATTATGTGTGCATGCACACACGTAAATGAAACAATCCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCTATTATGTGTGCATGCACACACGTAAATGAAACAATCCCCTC  650

seq1  TACAGTGAATTTCACCTCTTTAAACAGCTATAATATTTTGTTGTTGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAATTTCACCTCTTTAAACAGCTATAATATTTTGTTGTTGTCCA  700

seq1  CTGAATTAGCAGTTTGTCATATCTTAATAAATGTCTTCTACCTGACTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGCAGTTTGTCATATCTTAATAAATGTCTTCTACCTGACTGGA  750

seq1  TGACTGGTTGGTTGATTTAGATTTGAAGGACAAGCATCCAGTGTCTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTTGGTTGATTTAGATTTGAAGGACAAGCATCCAGTGTCTAAAC  800

seq1  ACAGGGTTTTAAGGAAGTGCTAGCACCAGCTGAAGTGACCACATGATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTTAAGGAAGTGCTAGCACCAGCTGAAGTGACCACATGATCAC  850

seq1  TTTGGGTCATTTTTACACCCAGAGCTTCATATTTCTCCTAGTGTTTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCATTTTTACACCCAGAGCTTCATATTTCTCCTAGTGTTTCAGT  900

seq1  TTCTATGTGGGATATTATGTTTTCTAAAAATTTTTAGTTGTTTTGGGATG  950
      |||||||| ||||| ||||||||||||||| |||||||||||||||||||
seq2  TTCTATGT-GGATA-TATGTTTTCTAAAAA-TTTTAGTTGTTTTGGGATG  947

seq1  GGATATATATTGAGATACAGTCTTAGGTAGCCCATAATGGCTTCCAAATT  1000
      ||||||||  ||||||| |||| ||||||| |||| ||||||||||||||
seq2  GGATATATTATGAGATAAAGTC-TAGGTAG-CCAT-ATGGCTTCCAAATT  994

seq1  CACTGTGCTGCT-AGAGCTTGCCTTAAACTCCTGATACTTCTACCTCTCT  1049
      |||||||||||| ||||| |||||| |||||||||||| |||||||||||
seq2  CACTGTGCTGCTAAGAGC-TGCCTT-AACTCCTGATAC-TCTACCTCTCT  1041

seq1  TCCTTCCAAATGCTATGGTTATAGGTGAGGACTACTAC-AATCATCA  1095
      |||||||||||||||||| | |||||||||||  ||||  |||||||
seq2  TCCTTCCAAATGCTATGGGTTTAGGTGAGGAC--CTACTCATCATCA  1086