BAC Information

Click to search

BAC

Clone NameB6Ng01-091C15
Chromosome18 (Build37)
Map Location 20,430,924 - 20,564,066
singlet/doubletdoublet
Overlap geneDsg1c, Dsg1a, Dsg1b
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
Downstream geneDsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091C15.bB6Ng01-091C15.g
ACCDH903269DH903270
length1,0821,145
definitionDH903269|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C15, 5' end.DH903270|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,430,924 - 20,432,015)(20,562,905 - 20,564,066)
sequence
gaattctcagacaactggaaggcaatcattttctttatctctggaaatga
gggaaattggtttgaaatagaaatgaatgaaagaacaaatgtaggaactc
tgaaggttgtcaaggtatggtataattaccctaaatcatttgttttgctg
gtcttttctatttcacaacatcaagttaaaatgatattagcattttataa
attagtttatgaaataacaaaatttactgtgctttaaaattatgtaaaat
acagaaaactctaatatgaatgcatatgcttataataatctctggaaaac
aagcattcaaaatttgaaattctttttattaattcaattctttccaaaca
tcaggtttggtgaaagcatttttatataagagggtttcaaacaagaaagt
atgattaacctttaaagtcaacattttgtttacatttaaagatttgcttc
ttcacttttaattgcatgtgcacttgagtgtagtgccctcagacaccata
gatatcagatcccctcaagctgaatttatgtgcatttatgagctgcccag
tgctgtcctatgaactgaactctggtcttcttcaagagtattatgtgctc
taaatcatcaaaacatccctccagcctcaaagtcaataattaaatactat
ttttaaaatcagatttttagatgtaccatgccaacattgagatgctaata
tgatgctttagaaatatttatcatataaattaaaagttgatttttccctc
cagggtgataaaattaaatcattataattctgccagtgtgcttttatgga
attcatctgtgacaatcatagaattatataaccttcttattcccatttca
ttgtggctgctggccaaagcttattttgcttctcctctgtatcaatcatt
caccacatttacattcataagatgtcaatgtaagtgaaatctgactcatg
agaagctgagagtgaggttttccttctggttaagtctttacaattctgac
gattgtatgtgatgcaaacaatacgaatcatcagaataaataaaaccctt
cttcactacaactttttttatttttctgaggg
gaattcactcagctgttaaaggatacgtaggctcacaaacaaaaataaaa
tatacagcctatcagatcagtttcagtaggctgtcctttatcattcatct
catttacatatatgttattgaagaaggaattataaaaacacatttaaaaa
caaccccctcccatcccactacccaccccttcccaaacaaaaatgctaaa
caataagatacccaaccagagaggacagagcccattttagtctttggttg
ctggaaagttgtctttttcttacctgagttgtcaatatattctataacat
tggcattaccaggtggcatttgtggcacacagatggtggttatcccctaa
aagacaaaagacaacattttcccatttgtaatgagccttttcttcctcta
cttgtatatttttattctaaaattaccacagagttcataaaagaagacta
tttaggatcattttaaattcaacttaaaagctgaatctcatttttgtctt
ggctggtgacctctactgaattttgaggtacaaactcttcctttccttcc
tagctacccaagaactacagatagtgtaatttttatcattgtagggcaca
tctggagacagaattttggtgagtccccaaatctcattcttggacttagc
acttacatcgtggggttcaggctgtggcccttctatggcccacgtgtgaa
ttgctccatcagaacattctggaacaggttcaaatccagctccaccacca
ggggcccctccacaatcacagcagatcagcaggaatggaaccactgaagg
agagaggggtgaggggttagcagtgcacaatgttgaaagaaaacactccg
atttttactggctaaatgagaactcctgagctgtctgagtttaaattgct
atttaatatatcaggacaccaattaatattggttggatgcccataaatca
cgaacttagaaacactagactgccatgaattttaatttgcttattagtgt
gaaattataaaaaatcataatagataggtgaatcttcatcacatgatcat
ccatcacgatcaggtagctcatcctggatgcaggatggtttaatttggga
aatccatcaacgtaatccacctattaacaactcaaagacgaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_20430924_20432015
seq2: B6Ng01-091C15.b_44_1125

seq1  GAATTCTCAGACAACTGGAAGGCAATCATTTTCTTTATCTCTGGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGACAACTGGAAGGCAATCATTTTCTTTATCTCTGGAAATGA  50

seq1  GGGAAATTGGTTTGAAATAGAAATGAATGAAAGAACAAATGTAGGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTGGTTTGAAATAGAAATGAATGAAAGAACAAATGTAGGAACTC  100

seq1  TGAAGGTTGTCAAGGTATGGTATAATTACCCTAAATCATTTGTTTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTGTCAAGGTATGGTATAATTACCCTAAATCATTTGTTTTGCTG  150

seq1  GTCTTTTCTATTTCACAACATCAAGTTAAAATGATATTAGCATTTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTATTTCACAACATCAAGTTAAAATGATATTAGCATTTTATAA  200

seq1  ATTAGTTTATGAAATAACAAAATTTACTGTGCTTTAAAATTATGTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTATGAAATAACAAAATTTACTGTGCTTTAAAATTATGTAAAAT  250

seq1  ACAGAAAACTCTAATATGAATGCATATGCTTATAATAATCTCTGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACTCTAATATGAATGCATATGCTTATAATAATCTCTGGAAAAC  300

seq1  AAGCATTCAAAATTTGAAATTCTTTTTATTAATTCAATTCTTTCCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAAAATTTGAAATTCTTTTTATTAATTCAATTCTTTCCAAACA  350

seq1  TCAGGTTTGGTGAAAGCATTTTTATATAAGAGGGTTTCAAACAAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTGGTGAAAGCATTTTTATATAAGAGGGTTTCAAACAAGAAAGT  400

seq1  ATGATTAACCTTTAAAGTCAACATTTTGTTTACATTTAAAGATTTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAACCTTTAAAGTCAACATTTTGTTTACATTTAAAGATTTGCTTC  450

seq1  TTCACTTTTAATTGCATGTGCACTTGAGTGTAGTGCCCTCAGACACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTAATTGCATGTGCACTTGAGTGTAGTGCCCTCAGACACCATA  500

seq1  GATATCAGATCCCCTCAAGCTGAATTTATGTGCATTTATGAGCTGCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGATCCCCTCAAGCTGAATTTATGTGCATTTATGAGCTGCCCAG  550

seq1  TGCTGTCCTATGAACTGAACTCTGGTCTTCTTCAAGAGTATTATGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTATGAACTGAACTCTGGTCTTCTTCAAGAGTATTATGTGCTC  600

seq1  TAAATCATCAAAACATCCCTCCAGCCTCAAAGTCAATAATTAAATACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATCAAAACATCCCTCCAGCCTCAAAGTCAATAATTAAATACTAT  650

seq1  TTTTAAAATCAGATTTTTAGATGTACCATGCCAACATTGAGATGCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATCAGATTTTTAGATGTACCATGCCAACATTGAGATGCTAATA  700

seq1  TGATGCTTTAGAAATATTTATCATATAAATTAAAAGTTGATTTTTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTAGAAATATTTATCATATAAATTAAAAGTTGATTTTTCCCTC  750

seq1  CAGGGTGATAAAATTAAATCATTATAATTCTGCCAGTGTGCTTTTATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGATAAAATTAAATCATTATAATTCTGCCAGTGTGCTTTTATGGA  800

seq1  ATTCATCTGTGACAATCATAGAATTATATAACCTTCTTATTCCCATTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGTGACAATCATAGAATTATATAACCTTCTTATTCCCATTTCA  850

seq1  TTGTGGCTGCTGGCCAAGGCTTATTTTGCTTCTCCTCTGTATCAATCATT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTGGCTGCTGGCCAAAGCTTATTTTGCTTCTCCTCTGTATCAATCATT  900

seq1  CACCACATTTACATTCAATAAGATGTCAATGTAAGGTGAAAATCTGACTC  950
      |||||||||||||||| ||||||||||||||||| ||| |||||||||||
seq2  CACCACATTTACATTC-ATAAGATGTCAATGTAA-GTG-AAATCTGACTC  947

seq1  ATGAGAAGCTGAGAGTGAGGTTTTCCTTCTGGTTAAGTCTTTAACAATTC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGAGAAGCTGAGAGTGAGGTTTTCCTTCTGGTTAAGTCTTT-ACAATTC  996

seq1  TTGACGATTGTATGTGATGCACACAATACGAATCATTCAGAATACAATAC  1050
       |||||||||||||||||||| ||||||||||||| |||||||| |||| 
seq2  -TGACGATTGTATGTGATGCAAACAATACGAATCA-TCAGAATA-AATAA  1043

seq1  AACCCTTCTTCATCTACCACTTTCTTTTATCTTTCCTGAGGG  1092
      |||||||||||| |||| ||||| |||||| ||| |||||||
seq2  AACCCTTCTTCA-CTACAACTTT-TTTTAT-TTTTCTGAGGG  1082

seq1: chr18_20562905_20564066
seq2: B6Ng01-091C15.g_67_1211 (reverse)

seq1  GGTTTTTGTCTTTGAGTTTGTTTATAAGGTGGATTACGTTGATGGATTTC  50
       | ||| ||||||||| ||||| || ||||||||||||||||||||||||
seq2  -GGTTTCGTCTTTGAG-TTGTTAAT-AGGTGGATTACGTTGATGGATTTC  47

seq1  CAAATATTAAACCATCCCTGCATCCCAGGAATGAAGCCTACTTGATCGTG  100
      | || |||||||||| ||||||| ||||| ||||   |||| ||||||||
seq2  CCAA-ATTAAACCAT-CCTGCAT-CCAGG-ATGA--GCTACCTGATCGTG  91

seq1  ATGGATGATCATTGTGATGAAGAATCACCTATCTTAATTTATGATTTTTT  150
      ||||||||||| ||||||||||| ||||||||||    |||||| |||||
seq2  ATGGATGATCA-TGTGATGAAGATTCACCTATCT---ATTATGA-TTTTT  136

seq1  TATAATTTCAACACTAATAAGCAAATTAAAATTCATGGCAGTCTAGTGTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTC-ACACTAATAAGCAAATTAAAATTCATGGCAGTCTAGTGTT  185

seq1  TCTAAGTTCGTGATTTATGGGCATCCAACCAATATTAATTGGTTGTCCTG  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTAAGTTCGTGATTTATGGGCATCCAACCAATATTAATTGG-TGTCCTG  234

seq1  ATATATTAAATAGCAATTTTAAACTCAGACAGCTCAGGAGTTCTCATTTA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATATTAAATAGCAA-TTTAAACTCAGACAGCTCAGGAGTTCTCATTTA  283

seq1  GCCAGTAAAAATCGGAGTGTTTTCTTTCAACATTGTGCACTGCTAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAAAATCGGAGTGTTTTCTTTCAACATTGTGCACTGCTAACCCC  333

seq1  TCACCCCTCTCTCCTTCAGTGGTTCCATTCCTGCTGATCTGCTGTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTCTCTCCTTCAGTGGTTCCATTCCTGCTGATCTGCTGTGATTG  383

seq1  TGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTT  433

seq1  CTGATGGAGCAATTCACACGTGGGCCATAGAAGGGCCACAGCCTGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGCAATTCACACGTGGGCCATAGAAGGGCCACAGCCTGAACCC  483

seq1  CACGATGTAAGTGCTAAGTCCAAGAATGAGATTTGGGGACTCACCAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGTAAGTGCTAAGTCCAAGAATGAGATTTGGGGACTCACCAAAAT  533

seq1  TCTGTCTCCAGATGTGCCCTACAATGATAAAAATTACACTATCTGTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCAGATGTGCCCTACAATGATAAAAATTACACTATCTGTAGTT  583

seq1  CTTGGGTAGCTAGGAAGGAAAGGAAGAGTTTGTACCTCAAAATTCAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTAGCTAGGAAGGAAAGGAAGAGTTTGTACCTCAAAATTCAGTAG  633

seq1  AGGTCACCAGCCAAGACAAAAATGAGATTCAGCTTTTAAGTTGAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCAGCCAAGACAAAAATGAGATTCAGCTTTTAAGTTGAATTTAA  683

seq1  AATGATCCTAAATAGTCTTCTTTTATGAACTCTGTGGTAATTTTAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCTAAATAGTCTTCTTTTATGAACTCTGTGGTAATTTTAGAATA  733

seq1  AAAATATACAAGTAGAGGAAGAAAAGGCTCATTACAAATGGGAAAATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACAAGTAGAGGAAGAAAAGGCTCATTACAAATGGGAAAATGTT  783

seq1  GTCTTTTGTCTTTTAGGGGATAACCACCATCTGTGTGCCACAAATGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTCTTTTAGGGGATAACCACCATCTGTGTGCCACAAATGCCAC  833

seq1  CTGGTAATGCCAATGTTATAGAATATATTGACAACTCAGGTAAGAAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATGCCAATGTTATAGAATATATTGACAACTCAGGTAAGAAAAAG  883

seq1  ACAACTTTCCAGCAACCAAAGACTAAAATGGGCTCTGTCCTCTCTGGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCCAGCAACCAAAGACTAAAATGGGCTCTGTCCTCTCTGGTTG  933

seq1  GGTATCTTATTGTTTAGCATTTTTGTTTGGGAAGGGGTGGGTAGTGGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTATTGTTTAGCATTTTTGTTTGGGAAGGGGTGGGTAGTGGGAT  983

seq1  GGGAGGGGGTTGTTTTTAAATGTGTTTTTATAATTCCTTCTTCAATAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGTTGTTTTTAAATGTGTTTTTATAATTCCTTCTTCAATAACA  1033

seq1  TATATGTAAATGAGATGAATGATAAAGGACAGCCTACTGAAACTGATCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAAATGAGATGAATGATAAAGGACAGCCTACTGAAACTGATCTG  1083

seq1  ATAGGCTGTATATTTTATTTTTGTTTGTGAGCCTACGTATCCTTTAACAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGTATATTTTATTTTTGTTTGTGAGCCTACGTATCCTTTAACAG  1133

seq1  CTGAGTGAATTC  1162
      ||||||||||||
seq2  CTGAGTGAATTC  1145