BAC Information

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BAC

Clone NameB6Ng01-091I18
Chromosome18 (Build37)
Map Location 54,662,032 - 54,792,756
singlet/doubletdoublet
Overlap genenone
Upstream genePrdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091I18.bB6Ng01-091I18.g
ACCDH903541DH903542
length1,015996
definitionDH903541|Mus musculus domesticus DNA, BAC clone: B6Ng01-091I18, 5' end.DH903542|Mus musculus domesticus DNA, BAC clone: B6Ng01-091I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,791,751 - 54,792,756)(54,662,032 - 54,663,028)
sequence
gaattcacatacacaccatctgatggatagataaataaacatgggctatc
cacttcaatggaatattatataaccataaaaggaaattaggtactgatat
atatcacaaaatggatgccccttagagtatcttgctaagtgaaagaaacc
agatgtcgagcattacatactatataattccatttatataaaatgttctt
aataagtaaaactacagagacaggaaaagattcatggctgcccggggctg
tagggggacccaaggtaatgactacacaatgtaacatttcttcctggaga
gggaaaagtgctctaaaatggactctgatgatgaacgccctcctctgtga
aaatacagccaatacatcattctcttaaagcagacagattggatggtgtg
cgagccatgtttcaacaaagctattaagaaaaaaagaggagggagacgga
agccctgactagatatatcagcatgccaaacgctgagctagtgtgaatga
tatttatgtcgagggggagaaataaccagaatatatagaagataggagaa
tgcaagaccaaaacacgaaggttcatctccactgtgaaccccgtgaggct
ggggcttggactaagggctctgactctggatggtcttcatctgaaacact
catcttaaaggcctggatgctggctccccagactgtggagcaaagaaaga
ctgtggtgcccacggctgtagggagataaggagtaatgactatactatgt
aacatttcttcctggagttggagggaactgattctaatgagagcctgttt
ctcagcacttatcaacaagctaacatttacatctcagtgccaagagtggg
gaaatggggaagagtcagtgtttattctgaacacttcatatagtagaggc
attagccagttagggtctccgtttgccttccggttcttgtcaattttcct
atgtgggggttatctgatttcaaatttaaaaatttgagcacattgaggct
gaggacagcgatcgt
gaattccttaaagaaactgacgattagtgagagacgatgtagaacactga
accgtcaggacttctgtctagaacaaaaccttctctgacaaaatttaaga
caggtgtgggctgtccatgcttgcgtatagaccgggtgtggatgggtctc
ccagggtgagctgagtgcacctgccttttctacatgctcgaatgagtaat
gcctcctgccttggtgtgttctctgcctaatgtgctgtcattgcagtgga
gtctgtggcacagcggcaatgatgctgctctgtgatatatgagggtcaca
gcagagttcatcacgatgtccttggcaacaagagataaggagtcagccag
tccttctctggctgcttacagtggaggccctgtttctcctacccagtaat
gtgaatagagagaaatgtactcaaattgtccatgtcccaagcccttccct
tcccatcccactgtccatatatttcttctctagacatgtttctttgaaca
gtgaatggactcagaaatatagaagtgtgagttacaaacaaacaagcaaa
caaacattgagggggtaccttgtttgttattatcccttttggtgaaatca
atattgtagaaatcttgggggctggagagatggctcaatgtaaagtcatc
tgctgtcatatctgacaaggcaaatttggcctctgctactcataaaagtg
gaaggagaaaaccaaccctcacaggttgtctcctgacttccatatactca
ccatgatctttgcatgtaaacacacacacacacacacacacacacacaca
cacacacacacgcgcgcgcgcgaacgcatgcgcgcgcacgcacacaataa
atcatttttaaatgtaataagactttctttaaaccctcattcatatgctg
atgtaaaaactgggttcaaataacttagtagggttttgttgttttgtttt
ttttatgaatgattttgcctcaatccattattattcgatccagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54791751_54792756
seq2: B6Ng01-091I18.b_51_1054 (reverse)

seq1  CTTCAGCCTCAATGTGCTCAAATTTTTAAAATTTGAAATCAGGATAACCC  50
      | ||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CCTCAGCCTCAATGTGCTCAAATTTTT-AAATTTGAAATCA-GATAACCC  48

seq1  CCACATAGGAAAATTGACAAGAACCGGAAGGCAAACGGAGACCCTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGGAAAATTGACAAGAACCGGAAGGCAAACGGAGACCCTAACTG  98

seq1  GCTAATGCCTCTACTATATGAAGTGTTCAGAATAAACACTGACTCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCTCTACTATATGAAGTGTTCAGAATAAACACTGACTCTTCCC  148

seq1  CATTTCCCCACTCTTGGCACTGAGATGTAAATGTTAGCTTGTTGATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCACTCTTGGCACTGAGATGTAAATGTTAGCTTGTTGATAAGT  198

seq1  GCTGAGAAACAGGCTCTCATTAGAATCAGTTCCCTCCAACTCCAGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAACAGGCTCTCATTAGAATCAGTTCCCTCCAACTCCAGGAAGA  248

seq1  AATGTTACATAGTATAGTCATTACTCCTTATCTCCCTACAGCCGTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACATAGTATAGTCATTACTCCTTATCTCCCTACAGCCGTGGGCA  298

seq1  CCACAGTCTTTCTTTGCTCCACAGTCTGGGGAGCCAGCATCCAGGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTTTCTTTGCTCCACAGTCTGGGGAGCCAGCATCCAGGCCTTT  348

seq1  AAGATGAGTGTTTCAGATGAAGACCATCCAGAGTCAGAGCCCTTAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTGTTTCAGATGAAGACCATCCAGAGTCAGAGCCCTTAGTCCA  398

seq1  AGCCCCAGCCTCACGGGGTTCACAGTGGAGATGAACCTTCGTGTTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGCCTCACGGGGTTCACAGTGGAGATGAACCTTCGTGTTTTGGT  448

seq1  CTTGCATTCTCCTATCTTCTATATATTCTGGTTATTTCTCCCCCTCGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTCTCCTATCTTCTATATATTCTGGTTATTTCTCCCCCTCGACA  498

seq1  TAAATATCATTCACACTAGCTCAGCGTTTGGCATGCTGATATATCTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATTCACACTAGCTCAGCGTTTGGCATGCTGATATATCTAGTC  548

seq1  AGGGCTTCCGTCTCCCTCCTCTTTTTTTCTTAATAGCTTTGTTGAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCGTCTCCCTCCTCTTTTTTTCTTAATAGCTTTGTTGAAACAT  598

seq1  GGCTCGCACACCATCCAATCTGTCTGCTTTAAGAGAATGATGTATTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCACACCATCCAATCTGTCTGCTTTAAGAGAATGATGTATTGGCT  648

seq1  GTATTTTCACAGAGGAGGGCGTTCATCATCAGAGTCCATTTTAGAGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCACAGAGGAGGGCGTTCATCATCAGAGTCCATTTTAGAGCACT  698

seq1  TTTCCCTCTCCAGGAAGAAATGTTACATTGTGTAGTCATTACCTTGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTCCAGGAAGAAATGTTACATTGTGTAGTCATTACCTTGGGTC  748

seq1  CCCCTACAGCCCCGGGCAGCCATGAATCTTTTCCTGTCTCTGTAGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACAGCCCCGGGCAGCCATGAATCTTTTCCTGTCTCTGTAGTTTTA  798

seq1  CTTATTAAGAACATTTTATATAAATGGAATTATATAGTATGTAATGCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAGAACATTTTATATAAATGGAATTATATAGTATGTAATGCTCG  848

seq1  ACATCTGGTTTCTTTCACTTAGCAAGATACTCTAAGGGGCATCCATTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGTTTCTTTCACTTAGCAAGATACTCTAAGGGGCATCCATTTTG  898

seq1  TGATATATATCAGTACCTAATTTCCTTTTATGGTTATATAATATTCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATATCAGTACCTAATTTCCTTTTATGGTTATATAATATTCCATT  948

seq1  GAAGTGGATAGCCCATGTTTATTTATCTATCCATCAGATGGTGTGTATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGATAGCCCATGTTTATTTATCTATCCATCAGATGGTGTGTATGT  998

seq1  GAATTC  1006
      ||||||
seq2  GAATTC  1004

seq1: chr18_54662032_54663028
seq2: B6Ng01-091I18.g_72_1067

seq1  GAATTCCTTAAAGAAACTGACGATTAGTGAGAGACGATGTAGAACACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGAAACTGACGATTAGTGAGAGACGATGTAGAACACTGA  50

seq1  ACCGTCAGGACTTCTGTCTAGAACAAAACCTTCTCTGACAAAATTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAGGACTTCTGTCTAGAACAAAACCTTCTCTGACAAAATTTAAGA  100

seq1  CAGGTGTGGGCTGTCCATGCTTGCGTATAGACCGGGTGTGGATGGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGGGCTGTCCATGCTTGCGTATAGACCGGGTGTGGATGGGTCTC  150

seq1  CCAGGGTGAGCTGAGTGCACCTGCCTTTTCTACATGCTCGAATGAGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGAGCTGAGTGCACCTGCCTTTTCTACATGCTCGAATGAGTAAT  200

seq1  GCCTCCTGCCTTGGTGTGTTCTCTGCCTAATGTGCTGTCATTGCAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGCCTTGGTGTGTTCTCTGCCTAATGTGCTGTCATTGCAGTGGA  250

seq1  GTCTGTGGCACAGCGGCAATGATGCTGCTCTGTGATATATGAGGGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGCACAGCGGCAATGATGCTGCTCTGTGATATATGAGGGTCACA  300

seq1  GCAGAGTTCATCACGATGTCCTTGGCAACAAGAGATAAGGAGTCAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTCATCACGATGTCCTTGGCAACAAGAGATAAGGAGTCAGCCAG  350

seq1  TCCTTCTCTGGCTGCTTACAGTGGAGGCCCTGTTTCTCCTACCCAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTGGCTGCTTACAGTGGAGGCCCTGTTTCTCCTACCCAGTAAT  400

seq1  GTGAATAGAGAGAAATGTACTCAAATTGTCCATGTCCCAAGCCCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGAGAGAAATGTACTCAAATTGTCCATGTCCCAAGCCCTTCCCT  450

seq1  TCCCATCCCACTGTCCATATATTTCTTCTCTAGACATGTTTCTTTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCCACTGTCCATATATTTCTTCTCTAGACATGTTTCTTTGAACA  500

seq1  GTGAATGGACTCAGAAATATAGAAGTGTGAGTTACAAACAAACAAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGACTCAGAAATATAGAAGTGTGAGTTACAAACAAACAAGCAAA  550

seq1  CAAACATTGAGGGGGTACCTTGTTTGTTATTATCCCTTTTGGTGAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGAGGGGGTACCTTGTTTGTTATTATCCCTTTTGGTGAAATCA  600

seq1  ATATTGTAGAAATCTTGGGGGCTGGAGAGATGGCTCAATGTAAAGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGAAATCTTGGGGGCTGGAGAGATGGCTCAATGTAAAGTCATC  650

seq1  TGCTGTCATATCTGACAAGGCAAATTTGGCCTCTGCTACTCAT-AAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTGTCATATCTGACAAGGCAAATTTGGCCTCTGCTACTCATAAAAGTG  700

seq1  GAAGGAGAAAACCAACCCTCACAGGTTGTCTCCTGACTTCCATATACTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAAAACCAACCCTCACAGGTTGTCTCCTGACTTCCATATACTCA  750

seq1  CCATGATCTTTGCATGTAA--ACACACACACACACACACACACACACACA  797
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CCATGATCTTTGCATGTAAACACACACACACACACACACACACACACACA  800

seq1  CACACACACACGCGCGCGCGCGCACGCATGCGCGCGCACGCACACAATAA  847
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACACACACACGCGCGCGCGCGAACGCATGCGCGCGCACGCACACAATAA  850

seq1  ATCATTTTTAAATGTAATAAGACTTTCTTTAAACCCTCATTCATATGCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTAAATGTAATAAGACTTTCTTTAAACCCTCATTCATATGCTG  900

seq1  ATTGTAATAACTGTGTTCAAATGAACTTAGTAGGGTTTTGTTTGTTTTGT  947
      | ||||| ||||| |||||||| ||||||||||||||||| |||||||||
seq2  A-TGTAAAAACTGGGTTCAAAT-AACTTAGTAGGGTTTTG-TTGTTTTGT  947

seq1  TTTTTTATAGAATGATTTTTGCTCAATTCATTATTATTCGATCTCAGGGC  997
      ||||||   ||||||||||  |||||| ||||||||||||||| ||||||
seq2  TTTTTTTATGAATGATTTTGCCTCAATCCATTATTATTCGATC-CAGGGC  996