BAC Information

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BAC

Clone NameB6Ng01-093C13
Chromosome18 (Build37)
Map Location 9,693,867 - 9,776,563
singlet/doubletdoublet
Overlap geneColec12, LOC665111
Upstream geneEG545242, LOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155
Downstream geneLOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093C13.bB6Ng01-093C13.g
ACCDH904722DH904723
length1,198976
definitionDH904722|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C13, 5' end.DH904723|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,693,867 - 9,695,075)(9,775,996 - 9,776,563)
sequence
gaattctttagaggtagagccctcagatacaaaggactgactgactacat
agtctaaaacatgtctggatttccaatgatcacattttctgtgtgtttat
tctgtattcatacagtgcttatctggttttcatgttggagtttttgatct
ataaaaggtcttgaaaggtcacccaaatatggagttgcaggtgagaatac
ttatgcctagccttgagaagacagccctgcaggggagagctacttcagag
ggcagggcccaaagacaaattctactgaataccagattgtggctttattc
tagttgacctgcttcatctccacagaacaaatgaatgacaaaacaaaatg
gaaggggaaatcaaagtaaatccttccacacccttgttactgcaaagaca
cacggtaaaagaaaatccaaactctataagcctggtatgcatccatcatt
agcctgcagtgttcaagtgtgatacagctgaggcctcataggaaaacaat
catgaatattttggagctacaacaaactttcttactgtctatactgtgaa
ttccctgtcgtaggaccaagttgtggtcagaaatagcaaaggagaagcct
gcatttccaacctaactaccttaaggatccatgtctgttttcactggccc
atgccttcccattgaacttaaacaaaggctctcacaccagttctaaaagc
tgtaagtagtctgcaatgggctagaaaagctatttcacatggctcctcat
gtagaataaagtacaggcagctctccacatctacagtctctatctttatg
gggtcaaccagccaagagcaaaagtgttcagaaaaagatttccagaaaag
caaaacttgagtttgccatgaagagtatcgaatttgtaggaatgaagtga
tgtacagggatcataaataagacagactttaaaacaggggagggtttggg
atacagtttagttgctagatagtttgcttagcttgtatgcataaaaccct
gaattggactccagaaaacacataaatctattagtcacagtggtgcacac
tggtaatgacagcactcagaggcagaagcaggacatcattcttgaaactt
catagtcttgactactggggcggttgaatgagaaatgttcagtattggtt
ccccataggccatataccttggtctcatgattggggaaattctgaact
gaattcaaacagtgagaaataagtgatgaaagtacaaaaaaattctcctt
actttttccattttattctcctctcagaaaataactgctgttaaaaatct
atattcttggattcgccatctgcacctgcgagctgaggctgttccacagc
cctctgtgcacaggtcctgccaaaaagagacctgacctctcaggagtgtt
tttactcctgggcacggaggtgagataagccaaattctataaaaacaaaa
caaaacaaaaaaacaaaaaaaaaccaactgtgtagaacggtgctggccag
gagcacatggggtgtaagatcagtagagcagctgggacaggatccttcct
gtgcaccctctgcacccttgagctgaggatgatccacaggccactgtgca
cgggtcccaccaccaggagagacttgttcttctaggagtgattttacttc
tgggctcgtgggtgagatagccactttctctccaataactatctggagct
gggcagtgaggagcacacagggagcaagaacagtggaacatatgggacag
gatccttccagtcaccatttggacccagagcttgggctgttcctgagccc
tttgtacacaagttctgccaggatcttgtctccccaaatgttgacacagg
cttatagactcacaggaggaagaaattctagccagagacagcaagaccaa
ataacaccagagataaccagatggcaaaaggcaaatgcaagaatcttaca
aacagaaaccaagactacttggcaccatcagaacccagttctcccaatac
agcaagtcttggattccccaacacaccggaaaatcaagatgtggatataa
atcacatctcatgatgatgatagaggattttaagaaggacataaataact
cccttaaagaaaaacaggagacacaggtagacaggtagaagcccttaaag
agctaacacaaaaatcccttaaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_9693867_9695075
seq2: B6Ng01-093C13.b_41_1238

seq1  GAATTCTTTAGAGGTAGAGCCCTCAGATACAAAGGACTGACTGACTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAGGTAGAGCCCTCAGATACAAAGGACTGACTGACTACAT  50

seq1  AGTCTAAAACATGTCTGGATTTCCAATGATCACATTTTCTGTGTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAACATGTCTGGATTTCCAATGATCACATTTTCTGTGTGTTTAT  100

seq1  TCTGTATTCATACAGTGCTTATCTGGTTTTCATGTTGGAGTTTTTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTCATACAGTGCTTATCTGGTTTTCATGTTGGAGTTTTTGATCT  150

seq1  ATAAAAGGTCTTGAAAGGTCACCCAAATATGGAGTTGCAGGTGAGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTCTTGAAAGGTCACCCAAATATGGAGTTGCAGGTGAGAATAC  200

seq1  TTATGCCTAGCCTTGAGAAGACAGCCCTGCAGGGGAGAGCTACTTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTAGCCTTGAGAAGACAGCCCTGCAGGGGAGAGCTACTTCAGAG  250

seq1  GGCAGGGCCCAAAGACAAATTCTACTGAATACCAGATTGTGGCTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCCCAAAGACAAATTCTACTGAATACCAGATTGTGGCTTTATTC  300

seq1  TAGTTGACCTGCTTCATCTCCACAGAACAAATGAATGACAAAACAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACCTGCTTCATCTCCACAGAACAAATGAATGACAAAACAAAATG  350

seq1  GAAGGGGAAATCAAAGTAAATCCTTCCACACCCTTGTTACTGCAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAATCAAAGTAAATCCTTCCACACCCTTGTTACTGCAAAGACA  400

seq1  CACGGTAAAAGAAAATCCAAACTCTATAAGCCTGGTATGCATCCATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTAAAAGAAAATCCAAACTCTATAAGCCTGGTATGCATCCATCATT  450

seq1  AGCCTGCAGTGTTCAAGTGTGATACAGCTGAGGCCTCATAGGAAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGTGTTCAAGTGTGATACAGCTGAGGCCTCATAGGAAAACAAT  500

seq1  CATGAATATTTTGGAGCTACAACAAACTTTCTTACTGTCTATACTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATATTTTGGAGCTACAACAAACTTTCTTACTGTCTATACTGTGAA  550

seq1  TTCCCTGTCGTAGGACCAAGTTGTGGTCAGAAATAGCAAAGGAGAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCGTAGGACCAAGTTGTGGTCAGAAATAGCAAAGGAGAAGCCT  600

seq1  GCATTTCCAACCTAACTACCTTAAGGATCCATGTCTGTTTTCACTGGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCAACCTAACTACCTTAAGGATCCATGTCTGTTTTCACTGGCCC  650

seq1  ATGCCTTCCCATTGAACTTAAACAAAGGCTCTCACACCAGTTCTAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCCCATTGAACTTAAACAAAGGCTCTCACACCAGTTCTAAAAGC  700

seq1  TGTAAGTAGTCTGCAATGGGCTAGAAAAGCTATTTCACATGGCTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAGTCTGCAATGGGCTAGAAAAGCTATTTCACATGGCTCCTCAT  750

seq1  GTAGAATAAAGTACAGGCAGCTCTCCACATCTACAGTCTCTATCTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAAAGTACAGGCAGCTCTCCACATCTACAGTCTCTATCTTTATG  800

seq1  GGGTCAACCAGCCAAGAGCAAAAGTGTTCAGAAAAAGATTTCCAG-AAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGTCAACCAGCCAAGAGCAAAAGTGTTCAGAAAAAGATTTCCAGAAAAG  850

seq1  CAAAACTTGAGTTTGCCATGAAGAGTATCGAATTTGTAGGAATGAAGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGAGTTTGCCATGAAGAGTATCGAATTTGTAGGAATGAAGTGA  900

seq1  TGTACAGGGATCATAAATAAGACAGACTTTAAAACAGGGGAGGGTTTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGGATCATAAATAAGACAGACTTTAAAACAGGGGAGGGTTTGGG  950

seq1  ATACAGTTTAGTTGCTAGATAGTTTGCTTAGCTTGTATGCACAAAACCCT  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACAGTTTAGTTGCTAGATAGTTTGCTTAGCTTGTATGCATAAAACCCT  1000

seq1  GAATTTGAACTCCAGAAAACACATAAATCTATTAGTCACAGTGGTGCACA  1049
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAA-TTGGACTCCAGAAAACACATAAATCTATTAGTCACAGTGGTGCACA  1049

seq1  CTTGTAATGACAGCACTCAAGAGGCAGAAGCAAGAACATCATTC-TGAAA  1098
      || ||||||||||||||| |||||||||||| || ||||||||| |||||
seq2  CTGGTAATGACAGCACTC-AGAGGCAGAAGC-AGGACATCATTCTTGAAA  1097

seq1  CTTCATAGTCCTTGACTACTGTGGCGGTTTGAATGAGAAATGTTCAAGTA  1148
      ||||||||| ||||||||||| ||||| ||||||||||||||||| ||||
seq2  CTTCATAGT-CTTGACTACTGGGGCGG-TTGAATGAGAAATGTTC-AGTA  1144

seq1  TTTGTGTCCCCCATAGGCCATATACCCTTGGTCCTCAATGGTTTGGGGAG  1198
      ||   || |||||||||||||||| ||||||| ||||   | ||||||| 
seq2  TT--GGTTCCCCATAGGCCATATA-CCTTGGT-CTCA--TGATTGGGGAA  1188

seq1  ATTCTGGAACT  1209
      ||||| |||||
seq2  ATTCT-GAACT  1198

seq1: chr18_9775996_9776563
seq2: B6Ng01-093C13.g_69_636 (reverse)

seq1  ATGGTGACTGGAAGGATCCTGTCCCATATGTTCCACTGTTCTTGCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACTGGAAGGATCCTGTCCCATATGTTCCACTGTTCTTGCTCCCT  50

seq1  GTGTGCTCCTCACTGCCCAGCTCCAGATAGTTATTGGAGAGAAAGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCCTCACTGCCCAGCTCCAGATAGTTATTGGAGAGAAAGTGGCT  100

seq1  ATCTCACCCACGAGCCCAGAAGTAAAATCACTCCTAGAAGAACAAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCCACGAGCCCAGAAGTAAAATCACTCCTAGAAGAACAAGTCTC  150

seq1  TCCTGGTGGTGGGACCCGTGCACAGTGGCCTGTGGATCATCCTCAGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGGTGGGACCCGTGCACAGTGGCCTGTGGATCATCCTCAGCTCA  200

seq1  AGGGTGCAGAGGGTGCACAGGAAGGATCCTGTCCCAGCTGCTCTACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCAGAGGGTGCACAGGAAGGATCCTGTCCCAGCTGCTCTACTGAT  250

seq1  CTTACACCCCATGTGCTCCTGGCCAGCACCGTTCTACACAGTTGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCCCATGTGCTCCTGGCCAGCACCGTTCTACACAGTTGGTTTTT  300

seq1  TTTTGTTTTTTTGTTTTGTTTTGTTTTTATAGAATTTGGCTTATCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTGTTTTGTTTTGTTTTTATAGAATTTGGCTTATCTCACC  350

seq1  TCCGTGCCCAGGAGTAAAAACACTCCTGAGAGGTCAGGTCTCTTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGCCCAGGAGTAAAAACACTCCTGAGAGGTCAGGTCTCTTTTTGGC  400

seq1  AGGACCTGTGCACAGAGGGCTGTGGAACAGCCTCAGCTCGCAGGTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGTGCACAGAGGGCTGTGGAACAGCCTCAGCTCGCAGGTGCAGA  450

seq1  TGGCGAATCCAAGAATATAGATTTTTAACAGCAGTTATTTTCTGAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAATCCAAGAATATAGATTTTTAACAGCAGTTATTTTCTGAGAGGA  500

seq1  GAATAAAATGGAAAAAGTAAGGAGAATTTTTTTGTACTTTCATCACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATGGAAAAAGTAAGGAGAATTTTTTTGTACTTTCATCACTTAT  550

seq1  TTCTCACTGTTTGAATTC  568
      ||||||||||||||||||
seq2  TTCTCACTGTTTGAATTC  568