BAC Information

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BAC

Clone NameB6Ng01-093D09
Chromosome10 (Build37)18 (Build37)
Map Location 80,099,415 - 80,100,52141,472,848 - 41,473,512
singlet/doubletsingletsinglet
Overlap geneCsnk1g2
Upstream geneShc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4
Downstream geneBtbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D09.bB6Ng01-093D09.g
ACCDH904760DH904761
length1,103854
definitionDH904760|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D09, 5' end.DH904761|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,099,415 - 80,100,521)(41,472,848 - 41,473,512)
sequence
gaattccctcatgtcagctgttagagtgcttttggccacaaacgccaact
gcctaggcatcccaggcactacaccctctccacttgcatgcagtcatggg
gagatgcctccctgggacccagtggtcacaacatagcccatcctcacttt
ggaggcagccccacaaaaccacacatactaccaagatgactggttgagag
gacgtaatgctcacttcccatgctgctgaccccaccctggtaagtcagca
gtaggctcagccccagtcagtcagtctctccttgcaggcagggctcccat
ctgctgtctgagcacagtgcaggcctgcttcagcatcactagtcacaaag
accatctccagggccacccccagcggctgtacctgccacgcctgcaggga
aaggccccgactactgcagcaagtagagccactgtgatgggatctgtggc
caggttgtctacaaccacctctgtccccagtcaaagccagccaccaactt
gtaaagagtgcccccaggctgaggcatagctagccctttggggtggtctc
catcactctctagcagtcatggacatcagcaagcagccttctctgatacc
aggccaagttcagagcccacttgtagctgggcccgtttctctctgacagc
gatggcttcccacctcctgtgctctaccagggtatgccaggttatataag
gtgaagcaccatgaagtttcttccaagaggttggctcggtgacagtccag
gtcaccatgggtctggtctctaccctacaccctgcaggcacctcagatct
cctgggggagcagccaaggactgccccttgcaagggaggtggggcctaca
cagtgttaagccagctctcctctaggagggtttattcaggtctctctgga
gccatgactctcacatgtgggaagtcaaagttactcaaggaagctcaagt
tctcctcgggtttcagctgccacacctgctatgagcagacgtctctaact
ttaaccacctcagggtcactcttcttctggtggcacctccctggggtttt
acctgatccaaccctgctctacgctggcccttccccccctccccccaacc
tga
gaattcccggacagccagggctacacaaagaaaccctgtcttgaaaagtc
aaataattaaagtaatttcacagaagtgacagctggacaggtctccgggg
accttcctgagctccctgaggcacctgtctcacaagacgattccagctgg
ggggcagcaggggatggggggggttcaccaaaagatgaaagaatgagcct
tcttgttgtcccttacatattccagttaatgttctttagaatttatagaa
gatggctgattaacattgaactgacttgtgtcctaaattgattgagaagg
gagtccggaagaacccggatttgagtagggtgtgacaacttcaacttgac
ttatgagtacttaactttgttttgacaaggatccttaaggctttaaaatc
tagagcttttttaacttgggcagtcaatatacagttattcttctctttgc
aataaatccatgaaaagtccacctatacagtcttagggaggatggaggaa
gataagtaatgagattaagacttgactgtggtacttgaactctttaatga
ctgtaggactggagaaatgactctgctgttactagttctccttatacaga
ggaactgcctttagctcccagcacccatgctgggtggctcacaactactt
ggaatttcgcagcaggggaactcctctcacctctgaggcattttagccat
gcacataatctcatactctgatacacacacacacacacacacacacacac
acgtttaatataactgtatatattatatgtgttagaataagaatcatatt
aaatatatcaaagtctggttgagcaaaatatctgtataactccaaaaaga
ctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80099415_80100521
seq2: B6Ng01-093D09.b_44_1146 (reverse)

seq1  TCAGGTTGGGGGGGGGGGGGGGGAGAGGCCAGCGGTAGAGCAGGGTTGGA  50
      |||||||  |||||| ||||||||  ||||||| ||||||||||||||||
seq2  TCAGGTT--GGGGGGAGGGGGGGAAGGGCCAGC-GTAGAGCAGGGTTGGA  47

seq1  TCAGTGAAAACCCCAGGGGAGGTGGCCACAGAAGAAGAGTGACCCTGAGG  100
      ||||  ||||||||| |||||||| |  ||||||||||||||||||||||
seq2  TCAGGTAAAACCCCA-GGGAGGTGCCACCAGAAGAAGAGTGACCCTGAGG  96

seq1  TGGTTAAAGTTAGAGACGTCTGCTCATAAGCAGGTGTTGGCAGCTG-CAG  149
      ||||||||||||||||||||||||||| |||||||| |||||||||  | 
seq2  TGGTTAAAGTTAGAGACGTCTGCTCAT-AGCAGGTG-TGGCAGCTGAAAC  144

seq1  CCGAGGAG-ACTTGAGCTTCCTTGGGTAACTTTGACTTCCCACATGTGAG  198
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CCGAGGAGAACTTGAGCTTCCTTGAGTAACTTTGACTTCCCACATGTGAG  194

seq1  AGTCATGGCTCCAGAGAGACCTGAATAAACCCTCCTAGAGGAGAGCTGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGCTCCAGAGAGACCTGAATAAACCCTCCTAGAGGAGAGCTGGC  244

seq1  TTAACACTGTGTAGGCCCCACCTCCCTTGCAAGGGGCAGTCCTTGGCTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGTGTAGGCCCCACCTCCCTTGCAAGGGGCAGTCCTTGGCTGC  294

seq1  TCCCCCAGGAGATCTGAGGTGCCTGCAGGGTGTAGGGTAGAGACCAGACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGGAGATCTGAGGTGCCTGCAGGGTGTAGGGTAGAGACCAGACC  344

seq1  CATGGTGACCTGGACTGTCACCGAGCCAACCTCTTGGAAGAAACTTCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGACCTGGACTGTCACCGAGCCAACCTCTTGGAAGAAACTTCATG  394

seq1  GTGCTTCACCTTATATAACCTGGCATACCCTGGTAGAGCACAGGAGGTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCACCTTATATAACCTGGCATACCCTGGTAGAGCACAGGAGGTGG  444

seq1  GAAGCCATCGCTGTCAGAGAGAAACGGGCCCAGCTACAAGTGGGCTCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATCGCTGTCAGAGAGAAACGGGCCCAGCTACAAGTGGGCTCTGA  494

seq1  ACTTGGCCTGGTATCAGAGAAGGCTGCTTGCTGATGTCCATGACTGCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCTGGTATCAGAGAAGGCTGCTTGCTGATGTCCATGACTGCTAG  544

seq1  AGAGTGATGGAGACCACCCCAAAGGGCTAGCTATGCCTCAGCCTGGGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGGAGACCACCCCAAAGGGCTAGCTATGCCTCAGCCTGGGGGC  594

seq1  ACTCTTTACAAGTTGGTGGCTGGCTTTGACTGGGGACAGAGGTGGTTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTACAAGTTGGTGGCTGGCTTTGACTGGGGACAGAGGTGGTTGTA  644

seq1  GACAACCTGGCCACAGATCCCATCACAGTGGCTCTACTTGCTGCAGTAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGGCCACAGATCCCATCACAGTGGCTCTACTTGCTGCAGTAGT  694

seq1  CGGGGCCTTTCCCTGCAGGCGTGGCAGGTACAGCCGCTGGGGGTGGCCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCTTTCCCTGCAGGCGTGGCAGGTACAGCCGCTGGGGGTGGCCCT  744

seq1  GGAGATGGTCTTTGTGACTAGTGATGCTGAAGCAGGCCTGCACTGTGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTCTTTGTGACTAGTGATGCTGAAGCAGGCCTGCACTGTGCTC  794

seq1  AGACAGCAGATGGGAGCCCTGCCTGCAAGGAGAGACTGACTGACTGGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGATGGGAGCCCTGCCTGCAAGGAGAGACTGACTGACTGGGGC  844

seq1  TGAGCCTACTGCTGACTTACCAGGGTGGGGTCAGCAGCATGGGAAGTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTACTGCTGACTTACCAGGGTGGGGTCAGCAGCATGGGAAGTGAG  894

seq1  CATTACGTCCTCTCAACCAGTCATCTTGGTAGTATGTGTGGTTTTGTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACGTCCTCTCAACCAGTCATCTTGGTAGTATGTGTGGTTTTGTGGG  944

seq1  GCTGCCTCCAAAGTGAGGATGGGCTATGTTGTGACCACTGGGTCCCAGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCAAAGTGAGGATGGGCTATGTTGTGACCACTGGGTCCCAGGG  994

seq1  AGGCATCTCCCCATGACTGCATGCAAGTGGAGAGGGTGTAGTGCCTGGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTCCCCATGACTGCATGCAAGTGGAGAGGGTGTAGTGCCTGGGA  1044

seq1  TGCCTAGGCAGTTGGCGTTTGTGGCCAAAAGCACTTTAACAGCTGACATG  1098
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCCTAGGCAGTTGGCGTTTGTGGCCAAAAGCACTCTAACAGCTGACATG  1094

seq1  AGGGAATTC  1107
      |||||||||
seq2  AGGGAATTC  1103

seq1: chr18_41472848_41473512
seq2: B6Ng01-093D09.g_265_922 (reverse)

seq1  AGTGTCTTTTCTGGAGTTAATACAGATATATTTGCTCAAACCAGACTTTT  50
      || ||||||| ||||||| |||||||||| ||||||| ||||||||||| 
seq2  AGAGTCTTTT-TGGAGTT-ATACAGATAT-TTTGCTC-AACCAGACTTTG  46

seq1  ATCTATTTTATATGATTTTTATTCTTAATACATATAATATATACAGTATA  100
      || ||||| |||||||| |||||| ||| |||||||||||||||||| ||
seq2  ATATATTTAATATGATTCTTATTC-TAACACATATAATATATACAGT-TA  94

seq1  TATTAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCAGAGTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCAGAGTATGA  144

seq1  GATTATGTGCATGGCTAAAATGCCTCAGAGGTGAGAAGAGTT-CCCTGCA  199
      |||||||||||||||||||||||||||||||||||| ||||| |||||| 
seq2  GATTATGTGCATGGCTAAAATGCCTCAGAGGTGAGAGGAGTTCCCCTGCT  194

seq1  GCTGAAATTCCAAGTAGTTGTGAGCCACCCAGCATGGGTGCTGGGAGCTA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-GAAATTCCAAGTAGTTGTGAGCCACCCAGCATGGGTGCTGGGAGCTA  243

seq1  AAGGCAGTTCCTCTGTATAAGGAGTACTAGTAACAGCAGAGTCATTTCTC  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGGCAGTTCCTCTGTATAAGGAGAACTAGTAACAGCAGAGTCATTTCTC  293

seq1  CAGTCCTACAGTCTTTTAAAGAGTTCAAGTACCACAGTCATGTCTTAATC  349
      |||||||||||||  ||||||||||||||||||||||||| |||||||||
seq2  CAGTCCTACAGTC-ATTAAAGAGTTCAAGTACCACAGTCAAGTCTTAATC  342

seq1  TCATTACTTAACTTCCTCCATCCTCCCTAAGACTGTATAGGTTGACTTTT  399
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TCATTACTTATCTTCCTCCATCCTCCCTAAGACTGTATAGGTGGACTTTT  392

seq1  CATGGATTTATTGCAAAGAGAAGAATAACTGTATATTGACTGCCCAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTATTGCAAAGAGAAGAATAACTGTATATTGACTGCCCAAGTT  442

seq1  AAAAAAGCTCTAGATTTTCAAGCCTTACGGATCCTTGTCAAAACAAAGTT  499
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AAAAAAGCTCTAGATTTTAAAGCCTTAAGGATCCTTGTCAAAACAAAGTT  492

seq1  AAATACTTATAAGTTAAATTGAAGTTGTCACATACTACTCAAAACCGGGC  549
      || |||| |||||| || ||||||||||||||  ||||||||| ||||| 
seq2  AAGTACTCATAAGTCAAGTTGAAGTTGTCACACCCTACTCAAATCCGGGT  542

seq1  TCTTCCAGACTCACTTCTCAATCAATTTAGGACCTAAGTCAGTTCAATGT  599
      |||||| ||||| ||||||||||||||||||||  |||||||||||||||
seq2  TCTTCCGGACTCCCTTCTCAATCAATTTAGGACACAAGTCAGTTCAATGT  592

seq1  TAATCAGCCATCTTCTATAAATTCTAAAGAACATTAACTCGAATATGTAA  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATCAGCCATCTTCTATAAATTCTAAAGAACATTAACTGGAATATGTAA  642

seq1  GTGACAACAAGAAGGC  665
      | ||||||||||||||
seq2  GGGACAACAAGAAGGC  658