BAC Information

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BAC

Clone NameB6Ng01-093J11
Chromosome18 (Build37)
Map Location 65,858,190 - 66,012,629
singlet/doubletdoublet
Overlap gene5330437I02Rik, Sec11c
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532
Downstream geneGrp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093J11.bB6Ng01-093J11.g
ACCDH905036DH905037
length1,1791,043
definitionDH905036|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J11, 5' end.DH905037|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,858,190 - 65,859,386)(66,011,578 - 66,012,629)
sequence
caaggacaccacgcaggaaacagatgacgaagccgtgatgggggagggtc
accactgcagaaggctgtaaaaccagtctggaaatgccattgtaatgaaa
tcaatagaattctactttccaagacatgtctgggtctattcttcttttga
gacatttgatctgttttggggagcacgttgctttttttatttagggtacc
cagctcatccattcttatgcctagagtagactctaaggtatgcactggag
aaacgcacaggctcagacgagcaatgagaggcgtctttgcgtgtgtgctt
tgtctggacttgagtagttgtaatttgacttttgtgtgtttctcaaattt
atacacatacctttctgcctgagcacaggctgaaaccaaattagttttca
acagggtacctcttttgaaatggaagtcattgttgttgctgatggaaatc
accaacaagaaaaatgtgaaaactctgttaaaagccagataggctaacag
agccatttccatttagaaatgcatggccacttctgtatttaaaactacct
gtattataatagagaataaaaatagaacacttggataattcaagatacta
caacatttgaagcaaattctgttctacactgggtcagatatcccaggatt
tgatgaaattgtggcaaaatataaactcagatatctcaataggttattta
agtcctgtttttggaactgattgtgtttcataacaatacttggtaaaaat
gataggggatgttgcaaccgagccaggcaagtagccaagagtctccagaa
ggtctgatagcaggctcagctttgtggtatagagacagccttaaagagtc
atcaacagtcacagacacatgaaccctgtcggccctgatcctctctaccc
atgcgttatccacgttctgtccgcagacacctggaaatttaaaatccttg
gtttttttgttctcatgaaagtagaaacttcttagttaaggagacactca
gttgtaaggtgctttaatctcgttagcaggtcgacctgaagtgcaatccc
caccactcccacaaaaagctgggtgtggtgtccccttttatccccacaaa
gagaggcacgacggtagattctcgagtttgctgactgacggtttcctgat
cgtgagtcccggccgtgaagactgatgac
gaattcccctgtggggtttcaagtctataattgtgttcagaaatggttga
gcctatattagaaagaataattggaggcttttgaatctgcctggcttgtt
gctcattagattctctttcaccatgtgcgtagagatcaattttcttatta
aatttcttaacttcttacctggaatagcaggcagaccaggacgatattca
tttcctgagtcactgcatctattaatcttttcctgaatctgaagtttgga
agtatgcaaggtcctggggtcctactggtatcttcagcaagggccaccat
ggctttaagtagcaagaccctaaaatgtctcccacttctgtttaagaact
gaagtctagaaatcccttaactagttagtggccacctataacattttttt
ttttttttttttttttggtttttagagacagggtttctctgtgtagcctg
gctgtcctggaacttactctgtagatcgggctggccttgaactcagaaat
tcgcctgcctctgcctcccaagtgctgggattaaaggcatgtgccaccac
gcccggctataacatcttctaatcaattttttttctccatctttgccaag
tttgtccactcacccttaccacaccctacttctaggggatatttgaccat
acctcaagacatttttggttgtcacctcttgaatgcccaacagcaatacg
accacatcaggagggtaggaccagaaacactgctgatcgcctggcagtgc
acgctacagcacctagcacaggctgaccctgaactgcaatctgcctaccg
ttatcccggataggaatttaggtatgcatgactatgtctgctttctccta
tctttttgaaaagaggtcttcccacccccttggaagtcggggtctagcct
atgcttgcttgctttgaaaaaagagatgctcccaggacgtgttaagtcat
tactgttggctggtggaactccctttggtaagtgggtggaggaagcctct
gactgtacttggtgaacagccctggttggaaaggagctgggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65858190_65859386
seq2: B6Ng01-093J11.b_55_1233

seq1  CAAGGACACCACGCAGGAAACAGATGACGAAGCCGTGATGGGGGAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACACCACGCAGGAAACAGATGACGAAGCCGTGATGGGGGAGGGTC  50

seq1  ACCACTGCAGAAGGCTGTAAAACCAGTCTGGAAATGCCATTGTAATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCAGAAGGCTGTAAAACCAGTCTGGAAATGCCATTGTAATGAAA  100

seq1  TCAATAGAATTCTACTTTCCAAGACATGTCTGGGTCTATTCTTCTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAATTCTACTTTCCAAGACATGTCTGGGTCTATTCTTCTTTTGA  150

seq1  GACATTTGATCTGTTTTGGGGAGCACGTTGCTTTTTTTATTTAGGGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGATCTGTTTTGGGGAGCACGTTGCTTTTTTTATTTAGGGTACC  200

seq1  CAGCTCATCCATTCTTATGCCTAGAGTAGACTCTAAGGTATGCACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATCCATTCTTATGCCTAGAGTAGACTCTAAGGTATGCACTGGAG  250

seq1  AAACGCACAGGCTCAGACGAGCAATGAGAGGCGTCTTTGCGTGTGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCACAGGCTCAGACGAGCAATGAGAGGCGTCTTTGCGTGTGTGCTT  300

seq1  TGTCTGGACTTGAGTAGTTGTAATTTGACTTTTGTGTGTTTCTCAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGACTTGAGTAGTTGTAATTTGACTTTTGTGTGTTTCTCAAATTT  350

seq1  ATACACATACCTTTCTGCCTGAGCACAGGCTGAAACCAAATTAGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACCTTTCTGCCTGAGCACAGGCTGAAACCAAATTAGTTTTCA  400

seq1  ACAGGGTACCTCTTTTGAAATGGAAGTCATTGTTGTTGCTGATGGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTACCTCTTTTGAAATGGAAGTCATTGTTGTTGCTGATGGAAATC  450

seq1  ACCAACAAGAAAAATGTGAAAACTCTGTTAAAAGCCAGATAGGCTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAGAAAAATGTGAAAACTCTGTTAAAAGCCAGATAGGCTAACAG  500

seq1  AGCCATTTCCATTTAGAAATGCATGGCCACTTCTGTATTTAAAACTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCCATTTAGAAATGCATGGCCACTTCTGTATTTAAAACTACCT  550

seq1  GTATTATAATAGAGAATAAAAATAGAACACTTGGATAATTCAAGATACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATAATAGAGAATAAAAATAGAACACTTGGATAATTCAAGATACTA  600

seq1  CAACATTTGAAGCAAATTCTGTTCTACACTGGGTCAGATATCCCAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGAAGCAAATTCTGTTCTACACTGGGTCAGATATCCCAGGATT  650

seq1  TGATGAAATTGTGGCAAAATATAAACTCAGATATCTCAATAGGTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATTGTGGCAAAATATAAACTCAGATATCTCAATAGGTTATTTA  700

seq1  AGTCCTGTTTTTGGAACTGATTGTGTTTCATAACAATACTTGGTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTTTTTGGAACTGATTGTGTTTCATAACAATACTTGGTAAAAAT  750

seq1  GATAGGGGATGTTGCAACCGAGCCAGGCAAGTAGCCAAGAGTCTCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGATGTTGCAACCGAGCCAGGCAAGTAGCCAAGAGTCTCCAGAA  800

seq1  GGTCTGATAGCAGGCTCAGCTTTGTGGTATAGAGACAGCCTTAAAGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATAGCAGGCTCAGCTTTGTGGTATAGAGACAGCCTTAAAGAGTC  850

seq1  ATCAACAGTCACAGACACATGAACCCTGTCGGCCCTGATCCTCTCTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTCACAGACACATGAACCCTGTCGGCCCTGATCCTCTCTACCC  900

seq1  ATGCGTTATCCACGTTCTGTCCGCAGACACCTGGAAATTTAAAATCCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTATCCACGTTCTGTCCGCAGACACCTGGAAATTTAAAATCCTTG  950

seq1  GTTTTTTTGTTCTCATGAAAGTAGAAACTTCTTAGGTTAAGGAGACAACT  1000
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GTTTTTTTGTTCTCATGAAAGTAGAAACTTCTTA-GTTAAGGAGAC-ACT  998

seq1  CAGTTGTAAGGTGCTTT-ATCTCGTAGGCAGGTCGACCTG-AGTGCAATC  1048
      ||||||||||||||||| |||||||  ||||||||||||| |||||||||
seq2  CAGTTGTAAGGTGCTTTAATCTCGTTAGCAGGTCGACCTGAAGTGCAATC  1048

seq1  CCCAGCACCCACACAAGAAAGCTGGGTGTGGTTGTCCACCTTTGTAATCC  1098
      |||| ||| | ||||| |||||||||||||| ||||| | |||   ||||
seq2  CCCACCACTCCCACAA-AAAGCTGGGTGTGG-TGTCCCCTTTT---ATCC  1093

seq1  CCACAATAGAGAGGCAGCGACAGGTAGATTCTCGAGGTTTGCTGGACTGA  1148
      |||||| ||||||||| |||| ||||||||||||| ||||||| ||||||
seq2  CCACAA-AGAGAGGCA-CGAC-GGTAGATTCTCGA-GTTTGCT-GACTGA  1138

seq1  CGGTTTACCCTGATCAGTGAGTCCCAGGCCAGTGAGAGACTTGGATGAC  1197
      ||||||  ||||||| ||||||||| |||| |||| |||||  ||||||
seq2  CGGTTT--CCTGATC-GTGAGTCCC-GGCC-GTGA-AGACT--GATGAC  1179

seq1: chr18_66011578_66012629
seq2: B6Ng01-093J11.g_69_1111 (reverse)

seq1  GTCCCAGGCCTCCTTTCCACACAGGGCTGTTTCACAAAGTTCAAGTCAGA  50
      |||||||  ||||||||||  |||||||| ||||| |||| | |||||||
seq2  GTCCCAG--CTCCTTTCCAACCAGGGCTG-TTCACCAAGTAC-AGTCAGA  46

seq1  GGCTGTCCTCCACCCACTTTACAAAGGGAGTTTCTACCAG-CAACAGTAA  99
      |||| ||||||||||||||  ||||||||| ||| ||||| |||||||||
seq2  GGCT-TCCTCCACCCACTTACCAAAGGGAG-TTCCACCAGCCAACAGTAA  94

seq1  TGACTTAACACGTTCCTGGGAGCCATCTCTTTTTTTCAAAGCAAGCAAGC  149
      |||||||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  TGACTTAACACG-TCCTGGGAG-CATCTC-TTTTTTCAAAGCAAGCAAGC  141

seq1  ATAGGCTAGACCCCCGACTTCCAGGGGGTGGGGAAGACCTCTTATCAAAA  199
      |||||||||| |||||||||||| ||||  ||||||||||||| ||||||
seq2  ATAGGCTAGA-CCCCGACTTCCAAGGGGGTGGGAAGACCTCTTTTCAAAA  190

seq1  AGATAGGAGAAAGCAGACATAGTCATGCATACCTAAATTCCTATCCGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGAAAGCAGACATAGTCATGCATACCTAAATTCCTATCCGGGA  240

seq1  TAACGGTAGGCAGATTGCAGTTCAGGGTCAGCCTGTGCTAGGTGCTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGTAGGCAGATTGCAGTTCAGGGTCAGCCTGTGCTAGGTGCTGTAG  290

seq1  CGTGCACTGCCAGGCGATCAGCAGTGTTTCTGGTCCTACCCTCCTGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACTGCCAGGCGATCAGCAGTGTTTCTGGTCCTACCCTCCTGATGT  340

seq1  GGTCGTATTGCTGTTGGGCATTCAAGAGGTGACAACCAAAAATGTCTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTATTGCTGTTGGGCATTCAAGAGGTGACAACCAAAAATGTCTTGA  390

seq1  GGTATGGTCAAATATCCCCTAGAAGTAGGGTGTGGTAAGGGTGAGTGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTCAAATATCCCCTAGAAGTAGGGTGTGGTAAGGGTGAGTGGAC  440

seq1  AAACTTGGCAAAGATGGAGAAAAAAAATTGATTAGAAGATGTTATAGCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGCAAAGATGGAGAAAAAAAATTGATTAGAAGATGTTATAGCCG  490

seq1  GGCGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  540

seq1  CGAATTTCTGAGTTCAAGGCCAGCCCGATCTACAGAGTAAGTTCCAGGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTCTGAGTTCAAGGCCAGCCCGATCTACAGAGTAAGTTCCAGGAC  590

seq1  AGCCAGGCTACACAGAGAAACCCTGTCTCTAAAAACCAAAAAAAAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTACACAGAGAAACCCTGTCTCTAAAAACCAAAAAAAAAAAAA  640

seq1  AAAAAAAAAATGTTATAGGTGGCCACTAACTAGTTAAGGGATTTCTAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGTTATAGGTGGCCACTAACTAGTTAAGGGATTTCTAGAC  690

seq1  TTCAGTTCTTAAACAGAAGTGGGAGACATTTTAGGGTCTTGCTACTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTTAAACAGAAGTGGGAGACATTTTAGGGTCTTGCTACTTAAA  740

seq1  GCCATGGTGGCCCTTGCTGAAGATACCAGTAGGACCCCAGGACCTTGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGGCCCTTGCTGAAGATACCAGTAGGACCCCAGGACCTTGCAT  790

seq1  ACTTCCAAACTTCAGATTCAGGAAAAGATTAATAGATGCAGTGACTCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAACTTCAGATTCAGGAAAAGATTAATAGATGCAGTGACTCAGG  840

seq1  AAATGAATATCGTCCTGGTCTGCCTGCTATTCCAGGTAAGAAGTTAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATATCGTCCTGGTCTGCCTGCTATTCCAGGTAAGAAGTTAAGAA  890

seq1  ATTTAATAAGAAAATTGATCTCTACGCACATGGTGAAAGAGAATCTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAGAAAATTGATCTCTACGCACATGGTGAAAGAGAATCTAATG  940

seq1  AGCAACAAGCCAGGCAGATTCAAAAGCCTCCAATTATTCTTTCTAATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAGCCAGGCAGATTCAAAAGCCTCCAATTATTCTTTCTAATATA  990

seq1  GGCTCAACCATTTCTGAACACAATTATAGACTTGAAACCCCACAGGGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACCATTTCTGAACACAATTATAGACTTGAAACCCCACAGGGGAA  1040

seq1  TTC  1052
      |||
seq2  TTC  1043