BAC Information

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BAC

Clone NameB6Ng01-093K20
Chromosome18 (Build37)
Map Location 29,886,949 - 30,086,356
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093K20.bB6Ng01-093K20.g
ACCDH905097DH905098
length1,100257
definitionDH905097|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K20, 5' end.DH905098|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,085,246 - 30,086,356)(29,886,949 - 29,887,205)
sequence
gaattccaataaagttttattcaagatgttgtcaaagtcagttacctact
gtttgtgaggacatcatccacaccacacattcaactggtgaaaggtttat
atatatgtcttttactttcagaatttattgctattgccactgtttttcct
tgttgcctttaaaggtgattgcattttagtatttatttatcgcaattgtt
agctttttcagccatttctctcaatctttcaagtagttgattgggactac
tactgcatttggagttaatatcatagcacttcgggtaacatgtaattgcc
tcacagacactgacatctcagcttcacattctgttctgtcacaatcaaat
agttgacatggacacgtaccacaagctctatcacaaacaccactcctgat
gccgaaacagccatgtacttttttagtaaagataaaaatgctatcacttc
atacttacccacatatttactatttctaatgacttaatgaatctgagtgt
cttttagttttgaattgaaaattgttctacatgatatattctgatcagac
ttctcccttcccacaagtcctcccagatgccttccacccatccaaatcgg
tacaccctgcatctctcctctttctacaaaacaatctgaatttctactgc
atgcattttatcttcagatgaagaacttaaaatccttctcactcagatat
gcttacaacatattttctccgcatttgtatatctgatgatgatttggtat
atttgttttcaagggttttttttcagcagatttgggattctagattagtt
tcttttgtaaagtactttaactatgtcatttcattttctgttgggtgcca
ccatctttcagaagttggtccttgttttgtgctatttttctttgtgtgaa
acgttccttcccacaccactaactagttgctgttctgttactatttgtgc
ttttagtgtaggaacctacattcttataagtaatcactttattgtttcct
catagactacatggaacatttggatcgggaaatttgcagttcttaatcag
tttacttctttcgtcaaatactggcatatctaacgtttctccgaaactta

agagttagaatctccacgagataaaaacaggtcagtcattgcccactatc
atatggccagccaggctgccagggcagagacacaaacacgtacaaaaagg
tgtagcaagaaggtgtcaaccaccttgctaacattttcagcttttttcct
gtatttttttctttaagcatccattcaagacaggtactgacgatatttca
tagtgaaatatatatatatatgtgtgtgtgtgtgtgtgtatatatatata
tatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30085246_30086356
seq2: B6Ng01-093K20.b_45_1144 (reverse)

seq1  TAAGTTTCTGAAGAAAACGTAAGATATGCCAAGTATTTGACGAAAGAAGT  50
      |||||||| ||   |||||| ||||||||| |||||||||||||||||||
seq2  TAAGTTTCGGA--GAAACGTTAGATATGCC-AGTATTTGACGAAAGAAGT  47

seq1  AAAACTGATTAAGAACTGCAAA-TTACCGATCAAAATG-TCCATGTGAGT  98
       ||||||||||||||||||||| || |||||| ||||| ||||||| |||
seq2  -AAACTGATTAAGAACTGCAAATTTCCCGATCCAAATGTTCCATGT-AGT  95

seq1  CCTAATGAGGAAAACAATAAAGTGATTACTTATAAGAATGTTAGGTTCCT  148
      |   |||||| ||||||||||||||||||||||||||||| |||||||||
seq2  C--TATGAGG-AAACAATAAAGTGATTACTTATAAGAATG-TAGGTTCCT  141

seq1  AACACTAAAAGCACAAAATAGTAAACAGAACAGCAACTAGTTAGTGGTGT  198
       ||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  -ACACTAAAAGCAC-AAATAGT-AACAGAACAGCAACTAGTTAGTGGTGT  188

seq1  GGGAAGGAACGTTTCACACAAAAGAAAAATAGCACAAAACAAGGACCAAC  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGAAGGAACGTTTCACAC-AAAGAAAAATAGCACAAAACAAGGACCAAC  237

seq1  TTCTGAAAGATGGTGGCACCCAACAGAAAATGAAATGACATAGTTAAAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGATGGTGGCACCCAACAGAAAATGAAATGACATAGTTAAAGT  287

seq1  ACTTTACAAAAGAAACTAATCTAGAATCCCAAATCTGCTGAAAAAAAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAAAAGAAACTAATCTAGAATCCCAAATCTGCTGAAAAAAAACC  337

seq1  CTTGAAAACAAATATACCAAATCATCATCAGATATACAAATGCGGAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACAAATATACCAAATCATCATCAGATATACAAATGCGGAGAAA  387

seq1  ATATGTTGTAAGCATATCTGAGTGAGAAGGATTTTAAGTTCTTCATCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGTAAGCATATCTGAGTGAGAAGGATTTTAAGTTCTTCATCTGA  437

seq1  AGATAAAATGCATGCAGTAGAAATTCAGATTGTTTTGTAGAAAGAGGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATGCATGCAGTAGAAATTCAGATTGTTTTGTAGAAAGAGGAGA  487

seq1  GATGCAGGGTGTACCGATTTGGATGGGTGGAAGGCATCTGGGAGGACTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGGTGTACCGATTTGGATGGGTGGAAGGCATCTGGGAGGACTTG  537

seq1  TGGGAAGGGAGAAGTCTGATCAGAATATATCATGTAGAACAATTTTCAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGGAGAAGTCTGATCAGAATATATCATGTAGAACAATTTTCAAT  587

seq1  TCAAAACTAAAAGACACTCAGATTCATTAAGTCATTAGAAATAGTAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTAAAAGACACTCAGATTCATTAAGTCATTAGAAATAGTAAATA  637

seq1  TGTGGGTAAGTATGAAGTGATAGCATTTTTATCTTTACTAAAAAAGTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAAGTATGAAGTGATAGCATTTTTATCTTTACTAAAAAAGTACA  687

seq1  TGGCTGTTTCGGCATCAGGAGTGGTGTTTGTGATAGAGCTTGTGGTACGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTCGGCATCAGGAGTGGTGTTTGTGATAGAGCTTGTGGTACGT  737

seq1  GTCCATGTCAACTATTTGATTGTGACAGAACAGAATGTGAAGCTGAGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTCAACTATTTGATTGTGACAGAACAGAATGTGAAGCTGAGATG  787

seq1  TCAGTGTCTGTGAGGCAATTACATGTTACCCGAAGTGCTATGATATTAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTGTGAGGCAATTACATGTTACCCGAAGTGCTATGATATTAAC  837

seq1  TCCAAATGCAGTAGTAGTCCCAATCAACTACTTGAAAGATTGAGAGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGCAGTAGTAGTCCCAATCAACTACTTGAAAGATTGAGAGAAAT  887

seq1  GGCTGAAAAAGCTAACAATTGCGATAAATAAATACTAAAATGCAATCACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAAAGCTAACAATTGCGATAAATAAATACTAAAATGCAATCACC  937

seq1  TTTAAAGGCAACAAGGAAAAACAGTGGCAATAGCAATAAATTCTGAAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCAACAAGGAAAAACAGTGGCAATAGCAATAAATTCTGAAAGT  987

seq1  AAAAGACATATATATAAACCTTTCACCAGTTGAATGTGTGGTGTGGATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATATATATAAACCTTTCACCAGTTGAATGTGTGGTGTGGATGA  1037

seq1  TGTCCTCACAAACAGTAGGTAACTGACTTTGACAACATCTTGAATAAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCACAAACAGTAGGTAACTGACTTTGACAACATCTTGAATAAAAC  1087

seq1  TTTATTGGAATTC  1111
      |||||||||||||
seq2  TTTATTGGAATTC  1100

seq1: chr18_29886949_29887205
seq2: B6Ng01-093K20.g_73_329

seq1  AGAGTTAGAATCTCCACGAGATAAAAACAGGTCAGTCATTGCCCACTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGAATCTCCACGAGATAAAAACAGGTCAGTCATTGCCCACTATC  50

seq1  ATATGGCCAGCCAGGCTGCCAGGGCAGAGACACAAACACGTACAAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCAGCCAGGCTGCCAGGGCAGAGACACAAACACGTACAAAAAGG  100

seq1  TGTAGCAAGAAGGTGTCAACCACCTTGCTAACATTTTCAGCTTTTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAGAAGGTGTCAACCACCTTGCTAACATTTTCAGCTTTTTTCCT  150

seq1  GTATTTTTTTCTTTAAGCATCCATTCAAGACAGGTACTGACGATATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTCTTTAAGCATCCATTCAAGACAGGTACTGACGATATTTCA  200

seq1  TAGTGAAATATATATATATATGTGTGTGTGTGTGTGTGTATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATATATATATATATGTGTGTGTGTGTGTGTGTATATATATATA  250

seq1  TATATAT  257
      |||||||
seq2  TATATAT  257