BAC Information

Click to search

BAC

Clone NameB6Ng01-093L16
Chromosome18 (Build37)
Map Location 41,784,087 - 41,972,625
singlet/doubletdoublet
Overlap geneLOC100041988
Upstream geneEG225416, LOC677182
Downstream geneLOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L16.bB6Ng01-093L16.g
ACCDH905135DH905136
length1,167684
definitionDH905135|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L16, 5' end.DH905136|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,971,441 - 41,972,625)(41,784,087 - 41,784,783)
sequence
gaattcacctgtgacccaggaaataaagtctcaccagacactgaatcccc
cagtgccctgatcttgggcttcatggggtatagagccacaaaccaaacca
aaataaaacaaacaaacaaacaaacaaacaaataaacacatcctgatgta
gattaggtaaatctatgacattttgctatagcaactcaaattgaccaaga
taattgtaatgatatgtatctttcagatatttttgtgtttatttgcatta
tatcttttcttgtacctcatgagattcaaaatattaggggatatacctgc
ttttgatttcatctaaaagtgaaaaatacatgaagaagaaaaataccatt
agtgaggggtgtagacattgtgaatgtagcagaagtttggcaatgaccta
tttggtgggcactgaaaatgtccaacatatcacaggttcttaaagaaact
agattgtatgaatgagcaaatgagatatagtatatggtaccaaaatctaa
actttctctaagataatttaatcatagaaagatatgttatgaagctggga
agaagacctgaatgctatttttagtttataataatactcaaagtcttgaa
tctatatacttttcattgctttgcaagccatagcatctgcaaaatgattt
tttatgtgtgtgtatgtttgaggggcattgggagactcacaggtctccta
tgtgatctttgaagtaagtaggctgcaaatttttagtgattttattttgg
aatgtcagataacaggcagctgaaattgaaacagcttcaaatgtcaagca
atcaaattttcaagcattagatgcattaaaccttaaaggcacagtcttaa
ctttccagtatccctgtaaatttgaacagtcccggcagaacaatcctacc
caagaagctgttcttatctgaattacccacattcttgatttcctccaaat
cctcagttttcagataacagcaagagcagaggtttgaaactacttcttta
caacactgttctagtaaatagctcagattttctggctttctgctggtgtt
ccagtactcagctctctgcactgcctaagggaaccagttctgtgcgactt
gtggttgtgttcaataaactttagtaaataaccgaggactggctgccgga
ggagcctttctggccag
gaattcaggagatatttgatggtaagaatcaagtggatttttttctacac
atatattgacatatatcaattatacatagtaatgttttccatgtgtgcct
accacatagttgatgatgtttggcccctctagtacccttcttccagcctt
tctggctttcttcctcccacaacactaattatattcctctgacttttgtg
tctttttctccccacaaccaagagatagcaagaaatacttgtatttgtga
ggctatcttagctcatctactgtgaaagactctagttctgtccatttttt
ataaaaatcacagtttcattcttctttatgtgcatgaggcagactattct
gggctgattgcacgcagaagatgaggaaggagaaacagtcaaaataaact
ctagttttttttttttttttgggatattttctttatttacattttaaatg
ttatccccttttctggtttcccacccatccccactcccggaagctcccct
atccatcctccctcctcgcttctatgaaattattcctccaaccacccacc
cactcccatttcccaccctggatggcctaaccgggcatttttcaagcctt
ctaaaaccaaggaacctcccttcattgatgcctaaaagccatcatcggtc
ctttgcgctgcattggtactccttcttcatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41971441_41972625
seq2: B6Ng01-093L16.b_46_1212 (reverse)

seq1  CTGGCCAGAAA-GCTCACTACCTGCAGCCAGTCCTCTGGGTTATTTATAC  49
      ||||||||||| |||| || || |||||||||||||  |||||||||   
seq2  CTGGCCAGAAAGGCTC-CT-CCGGCAGCCAGTCCTC--GGTTATTTA---  43

seq1  ATAAAGTTTTATTGGAACA-AACCACAAGTCTGCACAGAACTGTTTCCCT  98
       ||||| |||||| ||||| ||||||||||| ||||||||||| ||||||
seq2  CTAAAG-TTTATT-GAACACAACCACAAGTC-GCACAGAACTGGTTCCCT  90

seq1  TAGGCAGTGCAGAAGAGCTGAGTACTTGGAACACCAAGCAGATAGCCAGA  148
      |||||||||||| |||||||||||| ||||||||| |||||| |||||||
seq2  TAGGCAGTGCAG-AGAGCTGAGTAC-TGGAACACC-AGCAGAAAGCCAGA  137

seq1  AAATCTGAGCTATTTACTAGAAACAGTGTATGTAAAAGAAGTAGTTTTCA  198
      |||||||||||||||||||| |||||||| ||| |||||||||| |||||
seq2  AAATCTGAGCTATTTACTAG-AACAGTGT-TGT-AAAGAAGTAG-TTTCA  183

seq1  AACCTCTGCTCTTTGCTGTTATCTGGAAAACTGAGGATTTGGAGGAAATC  248
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  AACCTCTGCTC-TTGCTGTTATCT-GAAAACTGAGGATTTGGAGGAAATC  231

seq1  AAGAATGTGGGTAATTCAGATAAGAACAGCTTCTTGGGTAGGATTGTTTC  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAATGTGGGTAATTCAGATAAGAACAGCTTCTTGGGTAGGATTG-TTC  280

seq1  TGCCGGGACTGTTCAAATTTACAGGGATACTGGAAAGTTAAGACTGTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGGACTGTTCAAATTTACAGGGATACTGGAAAGTTAAGACTGTGCC  330

seq1  TTTAAGGTTTAATGCATCTAATGCTTGAAAATTTGATTGCTTGACATTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTTTAATGCATCTAATGCTTGAAAATTTGATTGCTTGACATTTG  380

seq1  AAGCTGTTTCAATTTCAGCTGCCTGTTATCTGACATTCCAAAATAAAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTCAATTTCAGCTGCCTGTTATCTGACATTCCAAAATAAAATC  430

seq1  ACTAAAAATTTGCAGCCTACTTACTTCAAAGATCACATAGGAGACCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTTGCAGCCTACTTACTTCAAAGATCACATAGGAGACCTGTG  480

seq1  AGTCTCCCAATGCCCCTCAAACATACACACACATAAAAAATCATTTTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAATGCCCCTCAAACATACACACACATAAAAAATCATTTTGCA  530

seq1  GATGCTATGGCTTGCAAAGCAATGAAAAGTATATAGATTCAAGACTTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATGGCTTGCAAAGCAATGAAAAGTATATAGATTCAAGACTTTGA  580

seq1  GTATTATTATAAACTAAAAATAGCATTCAGGTCTTCTTCCCAGCTTCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTATAAACTAAAAATAGCATTCAGGTCTTCTTCCCAGCTTCATA  630

seq1  ACATATCTTTCTATGATTAAATTATCTTAGAGAAAGTTTAGATTTTGGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTTTCTATGATTAAATTATCTTAGAGAAAGTTTAGATTTTGGTA  680

seq1  CCATATACTATATCTCATTTGCTCATTCATACAATCTAGTTTCTTTAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACTATATCTCATTTGCTCATTCATACAATCTAGTTTCTTTAAGA  730

seq1  ACCTGTGATATGTTGGACATTTTCAGTGCCCACCAAATAGGTCATTGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGATATGTTGGACATTTTCAGTGCCCACCAAATAGGTCATTGCCA  780

seq1  AACTTCTGCTACATTCACAATGTCTACACCCCTCACTAATGGTATTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGCTACATTCACAATGTCTACACCCCTCACTAATGGTATTTTTC  830

seq1  TTCTTCATGTATTTTTCACTTTTAGATGAAATCAAAAGCAGGTATATCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGTATTTTTCACTTTTAGATGAAATCAAAAGCAGGTATATCCC  880

seq1  CTAATATTTTGAATCTCATGAGGTACAAGAAAAGATATAATGCAAATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTTGAATCTCATGAGGTACAAGAAAAGATATAATGCAAATAAA  930

seq1  CACAAAAATATCTGAAAGATACATATCATTACAATTATCTTGGTCAATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATATCTGAAAGATACATATCATTACAATTATCTTGGTCAATTT  980

seq1  GAGTTGCTATAGCAAAATGTCATAGATTTACCTAATCTACATCAGGATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTATAGCAAAATGTCATAGATTTACCTAATCTACATCAGGATGT  1030

seq1  GTTTATTTGTTTGTTTGTTTGTTTGTTTGTTTTATTTTGGTTTGGTTTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTGTTTGTTTGTTTGTTTGTTTGTTTTATTTTGGTTTGGTTTGT  1080

seq1  GGCTCTATACCCCATGAAGCCCAAGATCAGGGCACTGGGGGATTCAGTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATACCCCATGAAGCCCAAGATCAGGGCACTGGGGGATTCAGTGT  1130

seq1  CTGGTGAGACTTTATTTCCTGGGTCACAGGTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGACTTTATTTCCTGGGTCACAGGTGAATTC  1167

seq1: chr18_41784087_41784783
seq2: B6Ng01-093L16.g_71_754

seq1  GAATTCAGGAGATATTTGATGGTAAGAATCAAGTGGATTTTTTTCTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGATATTTGATGGTAAGAATCAAGTGGATTTTTTTCTACAC  50

seq1  ATATATTGACATATATCAATTATACATAGTAATGTTTTCCATGTGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGACATATATCAATTATACATAGTAATGTTTTCCATGTGTGCCT  100

seq1  ACCACATAGTTGATGATGTTTGGCCCCTCTAGTACCCTTCTTCCAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATAGTTGATGATGTTTGGCCCCTCTAGTACCCTTCTTCCAGCCTT  150

seq1  TCTGGCTTTCTTCCTCCCACAACACTAATTATATTCCTCTGACTTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTCTTCCTCCCACAACACTAATTATATTCCTCTGACTTTTGTG  200

seq1  TCTTTTTCTCCCCACAACCAAGAGATAGCAAGAAATACTTGTATTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTCCCCACAACCAAGAGATAGCAAGAAATACTTGTATTTGTGA  250

seq1  GGCTATCTTAGCTCATCTACTGTGAAAGACTCTAGTTCTGTCCATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTTAGCTCATCTACTGTGAAAGACTCTAGTTCTGTCCATTTTTT  300

seq1  ATAAAAATCACAGTTTCATTCTTCTTTATGTGCATGAGGCAGACTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATCACAGTTTCATTCTTCTTTATGTGCATGAGGCAGACTATTCT  350

seq1  -GGCTGATTGCACGCAGAAGATGAGGAAGGAGAAACAGTCAAAATAAACT  399
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGATTGCACGCAGAAGATGAGGAAGGAGAAACAGTCAAAATAAACT  400

seq1  CTAGTTTTCTTTTTTTTATT-GGATATTTTCTTTATTTACATTTCAAATG  448
      |||||||| |||||||| || ||||||||||||||||||||||| |||||
seq2  CTAGTTTTTTTTTTTTTTTTGGGATATTTTCTTTATTTACATTTTAAATG  450

seq1  TTATCCCCTTTTCTGGTTTCCCACCCATCCCCACTCCCGGAAGCT-CCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATCCCCTTTTCTGGTTTCCCACCCATCCCCACTCCCGGAAGCTCCCCT  500

seq1  ATCCCATCCTCCCTTCCTCTGCTTCTATGATATTATTCCTCCACCCACCC  547
      || |||||||||| ||||| |||||||||| |||||||||||| ||||||
seq2  AT-CCATCCTCCC-TCCTC-GCTTCTATGAAATTATTCCTCCAACCACCC  547

seq1  ACCCACTCCCACTTTCCCACCCTTGATTGCCCTACACTGGGCATCTATCA  597
      ||||||||||| ||||||||||| || || |||| || |||||| | |||
seq2  ACCCACTCCCA-TTTCCCACCCTGGA-TGGCCTA-ACCGGGCATTTTTCA  594

seq1  AGCCTTCATAAGACCAAGGACCTTCCCTTCCATTGATGCCTGACAAGGCC  647
      ||||||| ||| |||||||| | |||||| |||||||||||   || |||
seq2  AGCCTTC-TAAAACCAAGGAACCTCCCTT-CATTGATGCCT--AAAAGCC  640

seq1  ATCATCTGCTACATATGCAGCTGCATATGTGTACTCCTTCTTCAATGGCT  697
      |||||| |   | | ||| ||||||| || ||||||||||||| ||||||
seq2  ATCATCGG--TCCTTTGC-GCTGCAT-TG-GTACTCCTTCTTC-ATGGCT  684