BAC Information

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BAC

Clone NameB6Ng01-094B11
Chromosome7 (Build37)18 (Build37)
Map Location 105,479,506 - 105,479,90961,916,097 - 61,917,305
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
Downstream geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094B11.bB6Ng01-094B11.g
ACCDH905401DH905402
length3291,189
definitionDH905401|Mus musculus domesticus DNA, BAC clone: B6Ng01-094B11, 5' end.DH905402|Mus musculus domesticus DNA, BAC clone: B6Ng01-094B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,479,506 - 105,479,909)(61,916,097 - 61,917,305)
sequence
tactcagggccgggcatggtggtgcacgcctttaatcccagcactcggga
ggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagt
gagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaca
aaacaaaacaaaacaaaacaaaaacaaaaacaaaaaaacaacaacagaaa
aaaagaattctactctagccacatatgtaacagaggatggcctaatcggt
catcagtgggaggagagtcccttggtcctgtgaaggttctatgtcccagt
ataggggaatgctaggtccaggaagcagg
gtaagttccctcttagccctgaaccatccctctaacgcacacgtgttcac
atgcatgtacacaaaggtgtctcttgctgctcttggctttcacacagagc
cattaggtctccttgggggtcctgggccctggcagctctgtaagctgcct
gaatctgtagggaaggactcaccccaagcttgcaggagtgaacgtgcaag
ccagatagcccaacccagggtggtcaccttacagccattgctgtccatca
gtcacggccaccaagcctggctgagcgatccagacactcgggaggaagta
ggagctatggctggggagagtggtggcctgggcctgagagcagccatgct
gtgagagagagggagccatgtgaccatgatagagaagaaagtactgagag
aggtatggtctaggggagttgttgccactacagtccctgcacatcagaca
tgggagcccctccccgctgcaggaaaccctatgcctccgtgtcataccat
caaagacctttaaagcacctcacgaagatagtccactgtcgtctctctct
gaaagccaggcaagagacatgagtgaggccaacctccagaagatgcccag
ggcactgtcagctatctgatgaggttcctgatcatggaggaagtccagcc
tggattcacaggcaggcctcccggatcccaaaccctctgccatgtttgtc
cttggttttctccgtagactgtgacctgggtgaccttcgggatatgtcgg
acgatggggaacccagcaaaggagccagccctgagccaaccaagagccca
tctctgagaagcgtgagtctgaccccacctctagcaagggtgagggaagc
tcttcctgtaaccccaggggccactgctgctgtgcaggaccgtcttctct
ccatggtgatgattaagggcagatgtcgtaccttgtgacatatcactggg
caggacatgcttacagtggtcacacagagtagagaagtgcgagcctagtc
tgtgcctctggccaaggacttcacatctagctcagttatataacaggaga
gagacgagacgaaggacgagagagagagaacggaaccacctctggactag
ggaggttggccttctgctatcccctcctcttgttggagccatggaacaaa
caccttcttagagcgctgaatttttccataccttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105479506_105479909
seq2: B6Ng01-094B11.b_66_382 (reverse)

seq1  CCTGCTTCCTGGACCTCGGCCATGGTCTGGCTTTACTGCTAAACATCCCT  50
      |||||||||||||||| |  |||   |   || |||||  | | |     
seq2  CCTGCTTCCTGGACCTAG--CATTCCC---CTATACTGGGACATA-----  40

seq1  GGGAACCTAATGCCCAGGACCCTGCAAGGCCTGGATGGCAGAACAGGTTG  100
        |||||   | | ||||||    |||||                    |
seq2  --GAACC---TTCACAGGAC----CAAGG--------------------G  61

seq1  GCTCTGCATTTCCCGACGGCTGCTCTAGGTGCCTGATCCTGGAATCAGTT  150
       |||| |   ||||                  |||||    || |  |  
seq2  ACTCTCC---TCCC-----------------ACTGATGACCGATTAGG--  89

seq1  CTGAAAATTTCCCCCTGACACTTCCATCC-CAGGTACTGAGGGCCACAAT  199
                             |||||| | | |||           ||
seq2  -----------------------CCATCCTCTGTTAC-----------AT  105

seq1  ATTTGGATGGACTAAGAAATTCAAGATGGACAATAGCTG-------GACG  242
      || ||| | || ||   |||||    |   |  | | ||       |   
seq2  ATGTGGCTAGAGTA--GAATTC-TTTTTTTCTGTTGTTGTTTTTTTGTTT  152

seq1  GGATCCCTTTTTTGGTTTGTTT--GTTTGTTTTTTGAGACAGGGTTTTTC  290
         |   | ||||| |||||||   ||||||||| |||||||||||| ||
seq2  TTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTC  202

seq1  TGTGTAGTCCTGGCTGGCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  340
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  252

seq1  GAACTCAGAAATCTACCTGCCTCTGC--CACAAGTGTTGGGATTAAAGGC  388
      |||||||||||||| |||||||||||  | | |||| |||||||||||||
seq2  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  302

seq1  GTGCACCACCACTGCC  404
      ||||||||||| ||||
seq2  GTGCACCACCA-TGCC  317

seq1: chr18_61916097_61917305
seq2: B6Ng01-094B11.g_75_1263 (reverse)

seq1  TTTTGA--GTATGGAAAAAATCAG-GCTCTAAGAAAGGTGTTTTGCTCAT  47
      ||||||  ||||||||||| |||| |||||||| |||||||||    |||
seq2  TTTTGAAGGTATGGAAAAATTCAGCGCTCTAAG-AAGGTGTTTGTTCCAT  49

seq1  GGCCTCCCAACAGAGCAGCGGGGATAGCAGAAGCCCACACCT-CCTAGTC  96
      |||   |||||| ||  | |||||||||||||| ||| |||| |||||||
seq2  GGC--TCCAACA-AGAGGAGGGGATAGCAGAAGGCCA-ACCTCCCTAGTC  95

seq1  CAGAGTGTGTTCTCGTTCTCTCTCTCTCTGTCTCTCTGTCTCTGTCTCTC  146
      ||||| ||| |  ||||||||||||||| ||| ||  ||||| |||||||
seq2  CAGAG-GTGGTTCCGTTCTCTCTCTCTC-GTC-CTTCGTCTC-GTCTCTC  141

seq1  TCCTGTATATATAACCTGAGGCTAAGATGGTGAAGTCCTTTGGGCCAGAG  196
      |||||| ||||||| |||| ||| |||| |||||||||||  ||||||| 
seq2  TCCTGT-TATATAA-CTGA-GCT-AGAT-GTGAAGTCCTT--GGCCAGA-  183

seq1  GGCACAGACTAGGCTCGCCACCTTCTCCCTACTCTGTGTGGACCACTGTA  246
      ||||||||||||||||||   |||||  ||||||||||| ||||||||||
seq2  GGCACAGACTAGGCTCGC--ACTTCT--CTACTCTGTGT-GACCACTGTA  228

seq1  AGCATGTCCCTGCCCAGTGATATGTCCACAAGGTACGACATCTGCCCTTA  296
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCATGT-CCTGCCCAGTGATATGT-CACAAGGTACGACATCTGCCCTTA  276

seq1  ATCATCACCATGGAGAGAAGACGGTCCTGCACAGCAGCAGTGGCCCCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACCATGGAGAGAAGACGGTCCTGCACAGCAGCAGTGGCCCCTGG  326

seq1  GGTTACAGGAAGAGCTTCCCTCACCCTTGCTAGAGGTGGGGTCAGACTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGAAGAGCTTCCCTCACCCTTGCTAGAGGTGGGGTCAGACTCA  376

seq1  CGCTTCTCAGAGATGGGCTCTTGGTTGGCTCAGGGCTGGCTCCTTTGCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTCAGAGATGGGCTCTTGGTTGGCTCAGGGCTGGCTCCTTTGCTG  426

seq1  GGTTCCCCATCGTCCGACATATCCCGAAGGTCACCCAGGTCACAGTCTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCATCGTCCGACATATCCCGAAGGTCACCCAGGTCACAGTCTAC  476

seq1  GGAGAAAACCAAGGACAAACATGGCAGAGGGTTTGGGATCCGGGAGGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACCAAGGACAAACATGGCAGAGGGTTTGGGATCCGGGAGGCCT  526

seq1  GCCTGTGAATCCAGGCTGGACTTCCTCCATGATCAGGAACCTCATCAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAATCCAGGCTGGACTTCCTCCATGATCAGGAACCTCATCAGAT  576

seq1  AGCTGACAGTGCCCTGGGCATCTTCTGGAGGTTGGCCTCACTCATGTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGTGCCCTGGGCATCTTCTGGAGGTTGGCCTCACTCATGTCTC  626

seq1  TTGCCTGGCTTTCAGAGAGAGACGACAGTGGACTATCTTCGTGAGGTGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGCTTTCAGAGAGAGACGACAGTGGACTATCTTCGTGAGGTGCT  676

seq1  TTAAAGGTCTTTGATGGTATGACACGGAGGCATAGGGTTTCCTGCAGCGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCTTTGATGGTATGACACGGAGGCATAGGGTTTCCTGCAGCGG  726

seq1  GGAGGGGCTCCCATGTCTGATGTGCAGGGACTGTAGTGGCAACAACTCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTCCCATGTCTGATGTGCAGGGACTGTAGTGGCAACAACTCCC  776

seq1  CTAGACCATACCTCTCTCAGTACTTTCTTCTCTATCATGGTCACATGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCATACCTCTCTCAGTACTTTCTTCTCTATCATGGTCACATGGCT  826

seq1  CCCTCTCTCTCACAGCATGGCTGCTCTCAGGCCCAGGCCACCACTCTCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCACAGCATGGCTGCTCTCAGGCCCAGGCCACCACTCTCCC  876

seq1  CAGCCATAGCTCCTACTTCCTCCCGAGTGTCTGGATCGCTCAGCCAGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATAGCTCCTACTTCCTCCCGAGTGTCTGGATCGCTCAGCCAGGCT  926

seq1  TGGTGGCCGTGACTGATGGACAGCAATGGCTGTAAGGTGACCACCCTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCGTGACTGATGGACAGCAATGGCTGTAAGGTGACCACCCTGGG  976

seq1  TTGGGCTATCTGGCTTGCACGTTCACTCCTGCAAGCTTGGGGTGAGTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTATCTGGCTTGCACGTTCACTCCTGCAAGCTTGGGGTGAGTCCT  1026

seq1  TCCCTACAGATTCAGGCAGCTTACAGAGCTGCCAGGGCCCAGGACCCCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAGATTCAGGCAGCTTACAGAGCTGCCAGGGCCCAGGACCCCCA  1076

seq1  AGGAGACCTAATGGCTCTGTGTGAAAGCCAAGAGCAGCAAGAGACACCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTAATGGCTCTGTGTGAAAGCCAAGAGCAGCAAGAGACACCTT  1126

seq1  TGTGTACATGCATGTGAACACGTGTGCGTTAGAGGGATGGTTCAGGGCTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATGCATGTGAACACGTGTGCGTTAGAGGGATGGTTCAGGGCTA  1176

seq1  AGAGGGAACTTAC  1209
      |||||||||||||
seq2  AGAGGGAACTTAC  1189