BAC Information

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BAC

Clone NameB6Ng01-096K19
Chromosome18 (Build37)1 (Build37)
Map Location 63,261,496 - 63,261,54553,921,856 - 53,923,003
singlet/doubletsingletsinglet
Overlap gene9030411M15Rik
Upstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K19.bB6Ng01-096K19.g
ACCDH907257DH907258
length9921,157
definitionDH907257|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K19, 5' end.DH907258|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,261,496 - 63,261,545)(53,921,856 - 53,923,003)
sequence
gaattctctgtttagctctgtaccccattttttaattggttcatttggtt
tgttgatatctttcttgagttctttatatactttggatattagccctctg
tcaaatgtagagttggtaaagatcttttctcattctgtaagttgtcatgc
tgtcctattgacagtgtccttatccgtgcaagagcttctcactttcatga
agtcccatttatcaagtgttggtcttatactcattagtatgctgttcagg
aagttgcctcctgtgccaatgaattcaaagctattccccactttctcttc
tattagatttagtatatctggttttggctgatgtctatgatccacttgaa
cttgagttgtgtgcagagtaatgaatatgaatctgttttcattcttctac
atgcaggcatccagttagacctgcatcatttgttgaagatgcttccattt
ttccattgcatggttttgccttctgtgtcaaatatcaagtgtccataggt
gtgtgtgcttatttctaggtcttcaattctatcccattgatcaagcctgt
ctgtttttatgccaataccatgcaggttttattcctgctgatgagctctt
cttaattagaggagccttctcctccctccctccctctacacccccccccc
catttatgttcctgttttgtcttatgatataccattgtcctttcttacca
gtttatttttctcagaagattattctggcatccaaagtgtccatataagt
agctctaaggctacctttatagtgtgagtttttagttaccttgctttatg
ctcctggtgggtcatgcttccagccagctgcccagagaatctttggatct
gtgaatgaaagacacacacacacacacacacacacacacacacacacaca
cacacacaaactagcttatttttattatgccatcaattagtgactgggca
cttctaatcctctgcctgctaccctagcccaatccgggaagt
gaattcccatatgtagtaggaagactcacctggtgagttctggggagatg
atacgggggagccacgcggggactgacagtagctggggtggagtaaggca
tgaggaggcacatatgacattatctcttcctcgaataagctaggaaaaga
catggaacagaggatatacgttagccaatgaggccaagtaagctgcttcc
acagtgaggaggaggtaggattctatgagggctttcttgttttcttccat
tgtgatttaacaggtagtttccttccatagtttcatactcagaaacatcc
gtgcacagataaaacatagttttgtcataaacattgctaaatgttgtctg
taagtatttattatgcttgaattttacctacatcctcaatcaaaaatatt
attgtagtctgatatctgtgtggatacataaaggtttaggtggctgtata
tcaggccattctatgaatatactagtttattatccctatgtctttcccca
acttcctgctttttattaccaatggcaccaagaatgttctctacatggta
tcccctgtacctgtgagtttcatagtgtgaatacagtacatatacaaagt
cagatttgttcagtcaaagcacacacccacccaatccaccctgacctctt
catcaagccctgcatcttttgctatacaactttaaaactttttatacatc
caaatttactaattacttcctatttcatatgtctgaatttactaatcact
cgataaacctgataaaagtacattttaaatcaaatcagttattgagagta
tataggaaatgaataatcaataaacaaattcaagtcatttacattttttt
atattttataatagcaatagaaaaatatctttacatgggttttaatgtga
tttgaatcatatcctaaagctacacagactctctcacaccttagttgtac
agattaaccaagtacatttttaccagaactattctcttcttaaaatataa
aacaccaaaggaagacacagattccacttagtatgtggcaagcacacttt
cttagctcttgactgtaataacctaaagtaaaatacagaagaacttagaa
tggtgaatagaacacccccccacttcccaatagctagttaatattattta
ttaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63261496_63261545
seq2: B6Ng01-096K19.b_683_956

seq1  --------------------------------------------------  0
                                                        
seq2  ACACCCCCCCCCCCATTTATGTTCCTGTTTTGTCTTATGATATACCATTG  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCCTTTCTTACCAGTTTATTTTTCTCAGAAGATTATTCTGGCATCCAAAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  TGTCCATATAAGTAGCTCTAAGGCTACCTTTATAGTGTGAGTTTTTAGTT  150

seq1  --------------------------------------------------  0
                                                        
seq2  ACCTTGCTTTATGCTCCTGGTGGGTCATGCTTCCAGCCAGCTGCCCAGAG  200

seq1  ------------------------ACACCCCCCCCCCCCCCCCCACACAC  26
                              |||| | | | | | | | |||||||
seq2  AATCTTTGGATCTGTGAATGAAAGACACACACACACACACACACACACAC  250

seq1  ACACACACACACACACACACAAAC  50
      ||||||||||||||||||||||||
seq2  ACACACACACACACACACACAAAC  274

seq1: chr1_53921856_53923003
seq2: B6Ng01-096K19.g_67_1223

seq1  GAATTCCCATATGTAGTAGGAAGACTCACCTGGTGAGTTCTGGGGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATATGTAGTAGGAAGACTCACCTGGTGAGTTCTGGGGAGATG  50

seq1  ATACGGGGGAGCCACGCGGGGACTGACAGTAGCTGGGGTGGAGTAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGGGGAGCCACGCGGGGACTGACAGTAGCTGGGGTGGAGTAAGGCA  100

seq1  TGAGGAGGCACATATGACATTATCTCTTCCTCGAATAAGCTAGGAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGCACATATGACATTATCTCTTCCTCGAATAAGCTAGGAAAAGA  150

seq1  CATGGAACAGAGGATATACGTTAGCCAATGAGGCCAAGTAAGCTGCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACAGAGGATATACGTTAGCCAATGAGGCCAAGTAAGCTGCTTCC  200

seq1  ACAGTGAGGAGGAGGTAGGATTCTATGAGGGCTTTCTTGTTTTCTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGAGGAGGTAGGATTCTATGAGGGCTTTCTTGTTTTCTTCCAT  250

seq1  TGTGATTTAACAGGTAGTTTCCTTCCATAGTTTCATACTCAGAAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTAACAGGTAGTTTCCTTCCATAGTTTCATACTCAGAAACATCC  300

seq1  GTGCACAGATAAAACATAGTTTTGTCATAAACATTGCTAAATGTTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGATAAAACATAGTTTTGTCATAAACATTGCTAAATGTTGTCTG  350

seq1  TAAGTATTTATTATGCTTGAATTTTACCTACATCCTCAATCAAAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTATTATGCTTGAATTTTACCTACATCCTCAATCAAAAATATT  400

seq1  ATTGTAGTCTGATATCTGTGTGGATACATAAAGGTTTAGGTGGCTGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTCTGATATCTGTGTGGATACATAAAGGTTTAGGTGGCTGTATA  450

seq1  TCAGGCCATTCTATGAATATACTAGTTTATTATCCCTATGTCTTTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCATTCTATGAATATACTAGTTTATTATCCCTATGTCTTTCCCCA  500

seq1  ACTTCCTGCTTTTTATTACCAATGGCACCAAGAATGTTCTCTACATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGCTTTTTATTACCAATGGCACCAAGAATGTTCTCTACATGGTA  550

seq1  TCCCCTGTACCTGTGAGTTTCATAGTGTGAATACAGTACATATACAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACCTGTGAGTTTCATAGTGTGAATACAGTACATATACAAAGT  600

seq1  CAGATTTGTTCAGTCAAAGCACACACCCACCCAATCCACCCTGACCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGTTCAGTCAAAGCACACACCCACCCAATCCACCCTGACCTCTT  650

seq1  CATCAAGCCCTGCATCTTTTGCTATACAACTTTAAAACTTTTTATACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCCCTGCATCTTTTGCTATACAACTTTAAAACTTTTTATACATC  700

seq1  CAAATTTACTAATTACTTCCTATTTCATATGTCTGAATTTACTAATCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTACTAATTACTTCCTATTTCATATGTCTGAATTTACTAATCACT  750

seq1  CGATAAACCTGATAAAAGTACATTTTAAATCAAATCAGTTATTGAGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAACCTGATAAAAGTACATTTTAAATCAAATCAGTTATTGAGAGTA  800

seq1  TATAGGAAATGAATAATCAAT-AACAAATTCAAGTCATTTACA-TTTTTT  848
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TATAGGAAATGAATAATCAATAAACAAATTCAAGTCATTTACATTTTTTT  850

seq1  ATATTTTATAATAGCAATAGAAAAATATCTTTACATGGG-TTTAATGTGA  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATTTTATAATAGCAATAGAAAAATATCTTTACATGGGTTTTAATGTGA  900

seq1  TTTGAATCATATCCTAAAGCTACACAGACTCTCTCACACCTTAG-TGTAC  946
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGAATCATATCCTAAAGCTACACAGACTCTCTCACACCTTAGTTGTAC  950

seq1  AGA-TAACCAAGTACATTTTTACCAGAACTAATTCTCTTCTTTAAAATAT  995
      ||| |||||||||||||||||||||||||| ||||||||| |||||||||
seq2  AGATTAACCAAGTACATTTTTACCAGAACT-ATTCTCTTC-TTAAAATAT  998

seq1  AAAACACCAA--GGAGACACAGATT-CACTTAGTATGTGGCAAGCACACT  1042
      ||||||||||  | ||||||||||| ||||||||||||||||||||||||
seq2  AAAACACCAAAGGAAGACACAGATTCCACTTAGTATGTGGCAAGCACACT  1048

seq1  CT-TAAGCCTTTGACTGAAATAAACTTAAAGTAAAATACAGAAGAACTTA  1091
       | | |||  ||||||| ||| ||| ||||||||||||||||||||||||
seq2  TTCTTAGCTCTTGACTGTAAT-AACCTAAAGTAAAATACAGAAGAACTTA  1097

seq1  GAAT-GTGAATAG-ACAACCCCCCACTT-CCAATAAGTAGTAAATATTAT  1138
      |||| |||||||| ||| |||||||||| ||||||  |||| ||||||||
seq2  GAATGGTGAATAGAACACCCCCCCACTTCCCAATAGCTAGTTAATATTAT  1147

seq1  TTATTAAAGA  1148
      ||||||||||
seq2  TTATTAAAGA  1157