BAC Information

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BAC

Clone NameB6Ng01-096O07
Chromosome18 (Build37)
Map Location 70,386,881 - 70,579,549
singlet/doubletdoublet
Overlap gene2310002L13Rik
Upstream geneEG225681, Tcf4, Ccdc68, Rab27b
Downstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O07.bB6Ng01-096O07.g
ACCDH907412DH907413
length9631,179
definitionDH907412|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O07, 5' end.DH907413|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,578,594 - 70,579,549)(70,386,881 - 70,388,053)
sequence
gaattcccatcttctttctctgtcagaatattgaagaataaccttctgtc
tttctcaaacgcagaggaaaagaagatgaggaggacgttcttcgtggagc
aggctaggaaacgcaaacagaattagcatttaatgaaagacttcgtattt
ttattatccttaaatgacaaatgcaattgtttttgtatatgtgcctatgt
atgtgtatagtatatgtatgtgtgtcccatatgtatgggtgacattgtga
aggcactggtgtagagattagagacagttactagggcatttcaaagttac
taaatagctaaagtcaagtcatagttctctagaaagtggagccaaagatc
aaatgctgtgttgttgttgtttttaatttactccaatttttaaaatttca
gttcttgggattaaagtctcacctttatgtctagggaagctctgttttat
gtgtcagagctctcaagtaagattcagttcatatgtctgacgggatgcca
gtgtctcagttatacttctaatgctgtgaccatgaccaaggcgcttgggg
aggaaagagttttttcaacttagggttatggcctgtcatgaaggtaagtc
agggcaggaactccaggcaggagctgatgcagaggctatggtggagtgct
gctcctggacttgcccctgatagtttgttcagcctgctttctttacaacc
aaggacctctagcctagttatggaatgacccacattggccctctcagatc
aaacatcaaccagtaacatgacctataggccaatcgggtggagacctttc
atcattgcagacaactctaccatcatccatccatccatccgtccatccat
ccatccatccttcattatctttccatccaccattccatccatcaatcctc
cattcatccatttcatcacccatccatcctccatcatcatcaccattcat
ccatccatcatcc
gaattcattacacatgtgggaagtatgaggaaaggccaagatttcttcca
aggacaaggactggttatcagtcctatgtagacacagcttctaagagatt
ctccattgctacggtctctggtcgagtcagctggacaagccgaaaggttt
aaaagtcactcatgaggcaaaagagtttcaaggaaactctcctcctggag
tctagcgttctctacccatacattaatttttcattcccgtgttccattac
cgcgttagtctagtgtatgaatccacgtgctctctttcagtattttccta
ttataagtgctttttaaaattgaattctgacatggctaaagccttctgcc
agtgttccaacagtcctagaaaggtcctagagcaagatcatgggcttgga
attcagtaagattgtaaaagctaagtcactcccttacacaggaatttacc
atcactaaggaagaaggaagtttcagaccaaaggagaaaccagaaactat
agcagagttacacccatacacatatttaaaatggcctaaggggaaggtgg
actatacaagagactaaaataggaactatggcaagggcgcgaagcccttg
accctggcttctaagattagtgaatcttaggtggagcccttgttgatccc
agctgttatcaatgtattctatcccaggtggttcccgttagaccttttgt
gttttgcattcctctgttttatgtaagattccggttatctcaattgtacc
tttgcaaatttgtcacccaacttccttattgtcctctgcataaaaagtct
gatgctcgattttgaaaatgacactcagattccacaaaatttctcctgtg
tgcgtctgtttgtcattcatccacgctttgcccacccgcgtcaagagacc
cgtttcacgcagacacagggacccagagggtctgcagcactccatcactg
aaatagcactgttattaataaagttacctctgactatctttacagcatac
taatccagccaaacaagaatatgagagtgcagccaaagcttcaataaagt
aaagtggatttaaatgtgaccccactttaaatgcttgctaaagatagcga
gagatttacgttgtctagaagtctatgtaaatcccttttaagaaacttgt
tttaacatcaaaactacaatgtaatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70578594_70579549
seq2: B6Ng01-096O07.b_46_1008 (reverse)

seq1  -------GGATGGATGGATG--GATG--GATGGA--ATGGATGGGTGGAT  37
             ||||||||| |||  ||||  ||||||  |||||||||| |||
seq2  GGATGATGGATGGATGAATGGTGATGATGATGGAGGATGGATGGGT-GAT  49

seq1  GGAATGGATGGATGGATGGATGGATGGATGGAATGGATGGATGGAATAGA  87
      | |||||||| ||||| |||| |||||||||||||| ||||||||| |||
seq2  GAAATGGATGAATGGA-GGATTGATGGATGGAATGG-TGGATGGAA-AGA  96

seq1  TGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGATGGT  137
      | || || ||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAT-GAAGGATGGATGGATGGATGGACGGATGGATGGATGGATGATGGT  145

seq1  AGAGTTGTCTGCAATTGATGAAAGGTCTCCACCCGATTGGCCTATAGGTC  187
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTCTGCAA-TGATGAAAGGTCTCCACCCGATTGGCCTATAGGTC  194

seq1  ATGTTACTGGTTGATGTTTGATCTGAGAGGGCCAATGTGGGTCATTCCAT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTGGTTGATGTTTGATCTGAGAGGGCCAATGTGGGTCATTCCAT  244

seq1  AACTAGGCTAGAGGTCCTTGGTTGTAAAGAAAGCAGGCTGAACAAACTAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCTAGAGGTCCTTGGTTGTAAAGAAAGCAGGCTGAACAAACTAT  294

seq1  CAGGGGCAAGTCCAGGAGCAGCACTCCACCATAGCCTCTGCATCAGCTCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAAGTCCAGGAGCAGCACTCCACCATAGCCTCTGCATCAGCTCC  344

seq1  TGCCTGGAGTTCCTGCCCTGACTTACCTTCATGACAGGCCATAACCCTAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAGTTCCTGCCCTGACTTACCTTCATGACAGGCCATAACCCTAA  394

seq1  GTTGAAAAAACTCTTTCCTCCCCAAGCGCCTTGGTCATGGTCACAGCATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAAACTCTTTCCTCCCCAAGCGCCTTGGTCATGGTCACAGCATT  444

seq1  AGAAGTATAACTGAGACACTGGCATCCCGTCAGACATATGAACTGAATCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATAACTGAGACACTGGCATCCCGTCAGACATATGAACTGAATCT  494

seq1  TACTTGAGAGCTCTGACACATAAAACAGAGCTTCCCTAGACATAAAGGTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGAGCTCTGACACATAAAACAGAGCTTCCCTAGACATAAAGGTG  544

seq1  AGACTTTAATCCCAAGAACTGAAATTTTAAAAATTGGAGTAAATTAAAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAATCCCAAGAACTGAAATTTTAAAAATTGGAGTAAATTAAAAA  594

seq1  CAACAACAACACAGCATTTGATCTTTGGCTCCACTTTCTAGAGAACTATG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACACAGCATTTGATCTTTGGCTCCACTTTCTAGAGAACTATG  644

seq1  ACTTGACTTTAGCTATTTAGTAACTTTGAAATGCCCTAGTAACTGTCTCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTTTAGCTATTTAGTAACTTTGAAATGCCCTAGTAACTGTCTCT  694

seq1  AATCTCTACACCAGTGCCTTCACAATGTCACCCATACATATGGGACACAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTACACCAGTGCCTTCACAATGTCACCCATACATATGGGACACAC  744

seq1  ATACATATACTATACACATACATAGGCACATATACAAAAACAATTGCATT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACTATACACATACATAGGCACATATACAAAAACAATTGCATT  794

seq1  TGTCATTTAAGGATAATAAAAATACGAAGTCTTTCATTAAATGCTAATTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTAAGGATAATAAAAATACGAAGTCTTTCATTAAATGCTAATTC  844

seq1  TGTTTGCGTTTCCTAGCCTGCTCCACGAAGAACGTCCTCCTCATCTTCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCGTTTCCTAGCCTGCTCCACGAAGAACGTCCTCCTCATCTTCTT  894

seq1  TTCCTCTGCGTTTGAGAAAGACAGAAGGTTATTCTTCAATATTCTGACAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCGTTTGAGAAAGACAGAAGGTTATTCTTCAATATTCTGACAG  944

seq1  AGAAAGAAGATGGGAATTC  956
      |||||||||||||||||||
seq2  AGAAAGAAGATGGGAATTC  963

seq1: chr18_70386881_70388053
seq2: B6Ng01-096O07.g_68_1246

seq1  GAATTCATTACACATGTGGGAAGTATGAGGAAAGGCCAAGATTTCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACACATGTGGGAAGTATGAGGAAAGGCCAAGATTTCTTCCA  50

seq1  AGGACAAGGACTGGTTATCAGTCCTATGTAGACACAGCTTCTAAGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGACTGGTTATCAGTCCTATGTAGACACAGCTTCTAAGAGATT  100

seq1  CTCCATTGCTACGGTCTCTGGTCGAGTCAGCTGGACAAGCCGAAAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCTACGGTCTCTGGTCGAGTCAGCTGGACAAGCCGAAAGGTTT  150

seq1  AAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGAAACTCTCCTCCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACTCATGAGGCAAAAGAGTTTCAAGGAAACTCTCCTCCTGGAG  200

seq1  TCTAGCGTTCTCTACCCATACATTAATTTTTCATTCCCGTGTTCCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGTTCTCTACCCATACATTAATTTTTCATTCCCGTGTTCCATTAC  250

seq1  CGCGTTAGTCTAGTGTATGAATCCACGTGCTCTCTTTCAGTATTTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTAGTCTAGTGTATGAATCCACGTGCTCTCTTTCAGTATTTTCCTA  300

seq1  TTATAAGTGCTTTTTAAAATTGAATTCTGACATGGCTAAAGCCTTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGCTTTTTAAAATTGAATTCTGACATGGCTAAAGCCTTCTGCC  350

seq1  AGTGTTCCAACAGTCCTAGAAAGGTCCTAGAGCAAGATCATGGGCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCAACAGTCCTAGAAAGGTCCTAGAGCAAGATCATGGGCTTGGA  400

seq1  ATTCAGTAAGATTGTAAAAGCTAAGTCACTCCCTTACACAGGAATTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAGATTGTAAAAGCTAAGTCACTCCCTTACACAGGAATTTACC  450

seq1  ATCACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAAACTAT  500

seq1  AGCAGAGTTACACCCATACACATATTTAAAATGGCCTAAGGGGAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTTACACCCATACACATATTTAAAATGGCCTAAGGGGAAGGTGG  550

seq1  ACTATACAAGAGACTAAAATAGGAACTATGGCAAGGGCGCGAAGCCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACAAGAGACTAAAATAGGAACTATGGCAAGGGCGCGAAGCCCTTG  600

seq1  ACCCTGGCTTCTAAGATTAGTGAATCTTAGGTGGAGCCCTTGTTGATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTTCTAAGATTAGTGAATCTTAGGTGGAGCCCTTGTTGATCCC  650

seq1  AGCTGTTATCAATGTATTCTATCCCAGGTGGTTCCCGTTAGACCTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTATCAATGTATTCTATCCCAGGTGGTTCCCGTTAGACCTTTTGT  700

seq1  G-TTTGCATTCCTCTGTTTTATGTAAGATTCCGGTTATCTCAATTGTACC  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATTCCTCTGTTTTATGTAAGATTCCGGTTATCTCAATTGTACC  750

seq1  -TTGCAAATTTGTCACCCAACTTCCTTATTGTCCTCTGCATAAAAAGTCT  798
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTTGTCACCCAACTTCCTTATTGTCCTCTGCATAAAAAGTCT  800

seq1  GATGCTCGA-TTTGAAAATGACACTCAGATTCCACAAAATTTCTCCTGTG  847
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCGATTTTGAAAATGACACTCAGATTCCACAAAATTTCTCCTGTG  850

seq1  TGCGTCTGTTTGTCATTCATCCACGCTTTGCCCACCCGCGTCAAGAGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTGTTTGTCATTCATCCACGCTTTGCCCACCCGCGTCAAGAGACC  900

seq1  CGTTCCACGCAGACACAGGGACCCAGAGGGTCTGCAGCACTCCATCACTG  947
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCACGCAGACACAGGGACCCAGAGGGTCTGCAGCACTCCATCACTG  950

seq1  AAAATAGCACTGTTATTTATAAAGTTACCTCTGACTATCTTTACAGCATA  997
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  -AAATAGCACTGTTATTAATAAAGTTACCTCTGACTATCTTTACAGCATA  999

seq1  CT-ATCCAG-CAAACAAG-ATATGAGAGTGCAGCCAAAGCTTCATTAAAG  1044
      || |||||| |||||||| ||||||||||||||||||||||||| |||||
seq2  CTAATCCAGCCAAACAAGAATATGAGAGTGCAGCCAAAGCTTCAATAAAG  1049

seq1  TAAAGTGGATTTAAATGTGACCCCACTTT-AATGC-TGCT-AAGATAGC-  1090
      ||||||||||||||||||||||||||||| ||||| |||| |||||||| 
seq2  TAAAGTGGATTTAAATGTGACCCCACTTTAAATGCTTGCTAAAGATAGCG  1099

seq1  AGAGATTTACCTTGTCTTAGAGTTCTATGTTAATTCTCTTTTATAATACT  1140
      |||||||||| ||||| ||||  |||||| ||| || ||||||  | |||
seq2  AGAGATTTACGTTGTC-TAGAAGTCTATG-TAAATCCCTTTTAAGAAACT  1147

seq1  TTGTTTTTAACATC-AAACTACAATTGTATCATT  1173
      |   |||||||||| ||||||||||   ||||||
seq2  T--GTTTTAACATCAAAACTACAATGTAATCATT  1179