BAC Information

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BAC

Clone NameB6Ng01-096O24
Chromosome18 (Build37)
Map Location 36,780,508 - 36,905,403
singlet/doubletdoublet
Overlap geneEif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik
Upstream geneSlc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979
Downstream geneWdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O24.bB6Ng01-096O24.g
ACCDH907442DH907443
length1,1491,140
definitionDH907442|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O24, 5' end.DH907443|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,780,508 - 36,781,663)(36,904,269 - 36,905,403)
sequence
gaattcaatcattgctaagcctttatacttactctgcttatgtcattgta
tttattcatgaagctgaaatttttacttgtgttgtgctaaggatttttat
attgctctttgtgacagttttaccttctttttctttcctgctaattgtta
aaaatgtttggcttctgtaaagtcttatgaaagtaataatcaaatcatct
ctcaaatttaatggcttttgctctgaaaaaaaatagtcttttcccaccac
tttgctcaagtaggaatatgatattaaatatgacatgcttttcagatttt
gcattagggagtaagtaggcctctgaaagtgattgcattgtgtactgaaa
ctggtcttctgaccttgctaaaaacagtacccaggggaaagcttggattg
ttttcatagttaaaatatatatgtataagtttaaacttcctaaagttttc
aatttaattttttagagacatggtcttaattctgttggccttgaattcct
cttccttcagtttgctaaggaactagtgttgtaggtgtgtgccaccaggt
ctggcgtgtagttctaagatctgatttatttcctttgagtgtgtaagtct
tttaagcttgagaatgatttaaacttgaagatgatttttcttttaaaatt
tcttatgttgaggctggcaaatggctcagagggaagaggcactgtctcct
agcctgatgacttatatttgatccctcgccctacttggtagaaggaagaa
aactgacttctgcaagttgtcctcttgacttcacaatattatgtgacatg
agagctcacacacatcctttctctcttctcccacttcctaaacaaacaaa
caacaaacaaacaaacaacaaacaaactgtgagtttaaggccagccaact
gagactcaatctcacacaaacaaacatcttaaaatgatgatctatgtttt
atatatgctaactacagtttagaaaaataatcagctgtttttacccagat
tgttttgtttgagtttgatagctttattgggactagagagatggcttgta
ttgggtttagaggtatgttggttacaggttcaactccagtaccatatact
gcttcacagctctgtaaagctcttagttccacggattgagaccctcttc
gaattctttcgccctctctactatctctcttgctcattgctaaacccatt
cctccaaagacaaaacactcactggtggaaggaatgaggatcatccacat
cgtggccatctggagccaaagggttagagaagggctcaccttaaaggggg
aaaaaatgacattaaatcaatcactcgtttaatgtgtgaagttccgtaca
agaactagcgattataaaaatgagcaacatagtaggcaagaagaggagca
gtgattatgcagtaatgctgaactgggaggactacaagaaactctattac
cagaaactgggaatggtgacccaaacctataatcccagcaccagggagat
tgaagcagcaaggccgtcgagatttcgaggccagtttgtgctacacattc
agattatctcaaaaggaaacgagcaaaagagctgtttgtggcggcaggca
cctgtcaacccagcacttgactagtggagacagaaagacccctgcgttct
agatcctagctcactcgtaaaaaataaataaaaagttataaaaccgggtt
tccttaaacgaggaatcaacaaccttcctccccctccggccccaacccca
aaagatcgcttctaaagcactacgcactacgcaactatatgggactttga
ggtttgcctcagagcgttagcgagcccctcccctcccgcgtcaaataaat
aaaccacgtccctaaaagagaggcacaagccatgggtttactaaggaagg
gatagggaggtagagctgcctcaaaaaattcaaaacgccggtcctccaca
aaagaaatgaaacttgagggcagctcagctgggcctctcctaagggacca
atggttcgcgcggctccatcagtcacacgacacctttgctaaaattcagc
aaactcgacgagccttagcgtctctagttcccgcgggcaggaaaggagtg
gttcgactcgagccttactatctcggtcctgggcatttttggcagcggct
ctcaacgtccgccattcgcgaatgtcccctaacagacaggcgggcgacaa
acttttatcacaatgcacaacgaaaactgtctcttcgcgtcacccacacg
atctcatgtcattggactagaattatcccggaccctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36780508_36781663
seq2: B6Ng01-096O24.b_47_1195

seq1  GAATTCAATCATTGCTAAGCCTTTATACTTACTCTGCTTATGTCATTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCATTGCTAAGCCTTTATACTTACTCTGCTTATGTCATTGTA  50

seq1  TTTATTCATGAAGCTGAAATTTTTACTTGTGTTGTGCTAAGGATTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATGAAGCTGAAATTTTTACTTGTGTTGTGCTAAGGATTTTTAT  100

seq1  ATTGCTCTTTGTGACAGTTTTACCTTCTTTTTCTTTCCTGCTAATTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTTGTGACAGTTTTACCTTCTTTTTCTTTCCTGCTAATTGTTA  150

seq1  AAAATGTTTGGCTTCTGTAAAGTCTTATGAAAGTAATAATCAAATCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTGGCTTCTGTAAAGTCTTATGAAAGTAATAATCAAATCATCT  200

seq1  CTCAAATTTAATGGCTTTTGCTCTGAAAAAAAATAGTCTTTTCCCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTTAATGGCTTTTGCTCTGAAAAAAAATAGTCTTTTCCCACCAC  250

seq1  TTTGCTCAAGTAGGAATATGATATTAAATATGACATGCTTTTCAGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAAGTAGGAATATGATATTAAATATGACATGCTTTTCAGATTTT  300

seq1  GCATTAGGGAGTAAGTAGGCCTCTGAAAGTGATTGCATTGTGTACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGGGAGTAAGTAGGCCTCTGAAAGTGATTGCATTGTGTACTGAAA  350

seq1  CTGGTCTTCTGACCTTGCTAAAAACAGTACCCAGGGGAAAGCTTGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTCTGACCTTGCTAAAAACAGTACCCAGGGGAAAGCTTGGATTG  400

seq1  TTTTCATAGTTAAAATATATATGTATAAGTTTAAACTTCCTAAAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAGTTAAAATATATATGTATAAGTTTAAACTTCCTAAAGTTTTC  450

seq1  AATTTAATTTTTTAGAGACATGGTCTTAATTCTGTTGGCCTTGAATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTTTTTAGAGACATGGTCTTAATTCTGTTGGCCTTGAATTCCT  500

seq1  CTTCCTTCAGTTTGCTAAGGAACTAGTGTTGTAGGTGTGTGCCACCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCAGTTTGCTAAGGAACTAGTGTTGTAGGTGTGTGCCACCAGGT  550

seq1  CTGGCGTGTAGTTCTAAGATCTGATTTATTTCCTTTGAGTGTGTAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTGTAGTTCTAAGATCTGATTTATTTCCTTTGAGTGTGTAAGTCT  600

seq1  TTTAAGCTTGAGAATGATTTAAACTTGAAGATGATTTTTCTTTTAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTTGAGAATGATTTAAACTTGAAGATGATTTTTCTTTTAAAATT  650

seq1  TCTTATGTTGAGGCTGGCAAATGGCTCAGAGGGAAGAGGCACTGTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTGAGGCTGGCAAATGGCTCAGAGGGAAGAGGCACTGTCTCCT  700

seq1  AGCCTGATGACTTATATTTGATCCCTCGCCCTACTTGGTAGAAGGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGACTTATATTTGATCCCTCGCCCTACTTGGTAGAAGGAAGAA  750

seq1  AACTGACTTCTGCAAGTTGTCCTCTTGACTTCACAATATTATGTGACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTTCTGCAAGTTGTCCTCTTGACTTCACAATATTATGTGACATG  800

seq1  AGAGCTCACACACATCCTTTCTCTCTTCTCCCACTTCCTAAACAAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCACACACATCCTTTCTCTCTTCTCCCACTTCCTAAACAAACAAA  850

seq1  CAAACAAACAAACAAACAAACAAACAAACTGTGAGTTTAAGGCCAGCCAA  900
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  C-AACAAACAAACAAAC-AACAAACAAACTGTGAGTTTAAGGCCAGCCAA  898

seq1  CTGAGACTCAATCTCACACAAAACAAACATCTTAAAATGATGATCTATGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAGACTCAATCTCACAC-AAACAAACATCTTAAAATGATGATCTATGT  947

seq1  TTTATATATGCTAACTACAGTTTAGAAAAATAATCAGCTG-TTTTACCCA  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTATATATGCTAACTACAGTTTAGAAAAATAATCAGCTGTTTTTACCCA  997

seq1  GATTTGTTTTGTTTTGAGTTTGAATAGCTTTATTGGGGACTAGAGAGATG  1049
      || |||||||| |||||||||| ||||||||||| |||||||||||||||
seq2  GA-TTGTTTTG-TTTGAGTTTG-ATAGCTTTATT-GGGACTAGAGAGATG  1043

seq1  GC-TGTAT--GGTATAGAGTAATTGTTGGGTACCAGGTTCAACTCCAGTA  1096
      || |||||  ||| |||||  | |||||| || |||||||||||||||||
seq2  GCTTGTATTGGGTTTAGAGGTA-TGTTGGTTA-CAGGTTCAACTCCAGTA  1091

seq1  CCCATATAACTGC-TCACAAGCTCTG-ATAACTC-TAGTTCCAGTGGATT  1143
       |||||| ||||| |||| ||||||| | | ||| ||||||||  |||||
seq2  -CCATAT-ACTGCTTCAC-AGCTCTGTAAAGCTCTTAGTTCCA-CGGATT  1137

seq1  AGACACCCTCTTC  1156
       || |||||||||
seq2  -GAGACCCTCTTC  1149

seq1: chr18_36904269_36905403
seq2: B6Ng01-096O24.g_67_1206 (reverse)

seq1  GGAAAGGG-GCGGGATAAATCTTAGCCAATGACAGGAGGCATCGTGT-GG  48
      ||||||||  |||||||| |||   ||||||||| |||  ||||||| ||
seq2  GGAAAGGGTCCGGGATAATTCTAGTCCAATGACATGAG--ATCGTGTGGG  48

seq1  TGACGCGAAGGAAGACAGGTTTTCGTGGTGCATTGTGGATAAAAGTTTGT  98
      ||||||||||  ||||| |||||||| ||||||||| |||||||||||||
seq2  TGACGCGAAG--AGACA-GTTTTCGTTGTGCATTGT-GATAAAAGTTTGT  94

seq1  CGCC--GCTGTCTTGTTAGGGGGACATTTCGCG-ATTGCGGACGTTGAGA  145
      ||||   ||||| ||||| ||||||| |||||| || |||||||||||||
seq2  CGCCCGCCTGTC-TGTTA-GGGGACA-TTCGCGAATGGCGGACGTTGAGA  141

seq1  GGCCGCTGCC-AAAATGCC--AGAACGAGATAGTAAGGCTCGAGTCG-AC  191
       ||||||||| ||||||||   || |||||||||||||||||||||| ||
seq2  -GCCGCTGCCAAAAATGCCCAGGACCGAGATAGTAAGGCTCGAGTCGAAC  190

seq1  CACT-CTTTCCTGCCCGCGGG-ACTAGAGACGCT-AGGCTCGTCGAGTTT  238
      |||| |||||||||||||||| |||||||||||| |||||||||||||||
seq2  CACTCCTTTCCTGCCCGCGGGAACTAGAGACGCTAAGGCTCGTCGAGTTT  240

seq1  GCTGAATTTAAGC-AAGGTGTCGTGTGACTGATGGAGCCGCGCGAACCAT  287
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTTTAGCAAAGGTGTCGTGTGACTGATGGAGCCGCGCGAACCAT  290

seq1  TGGT-CCTTAGGAGAGGCCCAGCTGAGCTGCCCTCAAGTTTCATTTCTTT  336
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTTAGGAGAGGCCCAGCTGAGCTGCCCTCAAGTTTCATTTCTTT  340

seq1  TGTGGAGGACCGGCGTTTTGAATTTTTTGAGGCAGCTCTACCTCCCTATC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGACCGGCGTTTTGAATTTTTTGAGGCAGCTCTACCTCCCTATC  390

seq1  CCTTCCTTAGTAAA-CCATGGCTTGTGCCTCTCTTTTAGGGACGTGGTTT  435
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTAGTAAACCCATGGCTTGTGCCTCTCTTTTAGGGACGTGGTTT  440

seq1  ATTTATTTGACGCGGGAGGGGAGGGGCTCGCTAACGCTCTGAGGCAAACC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGACGCGGGAGGGGAGGGGCTCGCTAACGCTCTGAGGCAAACC  490

seq1  TCAAAGTCCCATATAGTTGCGTAGTGCGTAGTGCTTTAGAAGCGATCTTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCCATATAGTTGCGTAGTGCGTAGTGCTTTAGAAGCGATCTTT  540

seq1  TGGGGTTGGGGCCGGAGGGGGAGGAAGGTTGTTGATTCCTCGTTTAAGGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGGGCCGGAGGGGGAGGAAGGTTGTTGATTCCTCGTTTAAGGA  590

seq1  AACCCGGTTTTATAACTTTTTATTTATTTTTTACGAGTGAGCTAGGATCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGTTTTATAACTTTTTATTTATTTTTTACGAGTGAGCTAGGATCT  640

seq1  AGAACGCAGGGGTCTTTCTGTCTCCACTAGTCAAGTGCTGGGTTGACAGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCAGGGGTCTTTCTGTCTCCACTAGTCAAGTGCTGGGTTGACAGG  690

seq1  TGCCTGCCGCCACAAACAGCTCTTTTGCTCGTTTCCTTTTGAGATAATCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCGCCACAAACAGCTCTTTTGCTCGTTTCCTTTTGAGATAATCT  740

seq1  GAATGTGTAGCACAAACTGGCCTCGAAATCTCGACGGCCTTGCTGCTTCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTAGCACAAACTGGCCTCGAAATCTCGACGGCCTTGCTGCTTCA  790

seq1  ATCTCCCTGGTGCTGGGATTATAGGTTTGGGTCACCATTCCCAGTTTCTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGGTGCTGGGATTATAGGTTTGGGTCACCATTCCCAGTTTCTG  840

seq1  GTAATAGAGTTTCTTGTAGTCCTCCCAGTTCAGCATTACTGCATAATCAC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAGTTTCTTGTAGTCCTCCCAGTTCAGCATTACTGCATAATCAC  890

seq1  TGCTCCTCTTCTTGCCTACTATGTTGCTCATTTTTATAATCGCTAGTTCT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCTTCTTGCCTACTATGTTGCTCATTTTTATAATCGCTAGTTCT  940

seq1  TGTACGGAACTTCACACATTAAACGAGTGATTGATTTAATGTCATTTTTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGAACTTCACACATTAAACGAGTGATTGATTTAATGTCATTTTTT  990

seq1  CCCCCTTTAAGGTGAGCCCTTCTCTAACCCTTTGGCTCCAGATGGCCACG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTAAGGTGAGCCCTTCTCTAACCCTTTGGCTCCAGATGGCCACG  1040

seq1  ATGTGGATGATCCTCATTCCTTCCACCAGTGAGTGTTTTGTCTTTGGAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGATCCTCATTCCTTCCACCAGTGAGTGTTTTGTCTTTGGAGG  1090

seq1  AATGGGTTTAGCAATGAGCAAGAGAGATAGTAGAGAGGGCGAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTTAGCAATGAGCAAGAGAGATAGTAGAGAGGGCGAAAGAATTC  1140