BAC Information

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BAC

Clone NameB6Ng01-097J23
Chromosome18 (Build37)
Map Location 88,708,076 - 88,844,055
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097J23.bB6Ng01-097J23.g
ACCDH907945DH907946
length1,1281,165
definitionDH907945|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J23, 5' end.DH907946|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,708,076 - 88,709,196)(88,842,912 - 88,844,055)
sequence
gaattctagccacataatcttctactctctataaaatccctggtcttagg
tattttattatagcaatagaaaatgcactgagacaaatgagatcagtgaa
ttgggccatttagagtttcaaagaaacacactggtctgctgaaaactaat
tttaacatcttttcatttgtaaagtccagactatctatatgaattcctgg
caaaaaaacctgaaggtgagatatccagacaataattaactaatcaatcc
aacaacgtggacaaaggagctgttccatgggcgtctgatgctccttcagc
tcttggaacccttcctttcagaaacaccatgggattcatctctaaataaa
acaaagtcctcagatataaggggaataccaggttgaaaagattctatccc
gaacttgggccagtgctggaagctctatggcaagaggctttgctctgttc
tgccttctgtcactgtggatcatgatctgtaactttcagcttcattctca
gggttctgtcacagtatgactttagcttgtaagtagctaactttcaaact
ctgcgggggcttcaagatatcactaaaagtcactagaagccttttaagtg
ctgactctatggtatttgaaggagaaacatttagtaaattggtgtcttct
agcacatttgaagtctaaatatctgctttcataatgtgaatattttcaag
tttcagcacatttttaaattttccgatataaataacaagtggcttttaaa
accctgcttatgttcttagaaaatttactaagcgccacatatggttgagc
ccactaactatagaatgaatgaaagttgagaaagagtcagtggctattga
agtccctgagcataattataaaaggtagacagtgtatttgaaagaaaata
tctttctgaaacccaccagtacagactaaatttaagtcaataaaagttta
aaaacaataaagcttgcataattcttaccaaatctattcttttctataag
aagacaaagaaaaagtactgaaaagaaacaatttcttgatggtaatggat
aataacatttctaggatatgttccagccaaataaaatgaggttccttgag
atgttttcgaagaaagaaaagtcacaaa
gaattcacacatcagcttggtggtagagttatcccagagctgtacctttg
agaacaacattgctataaattagaagatttcattttctgcctttattatt
tttttttgaattgagtttttcttgtgtgtgtgtgttttgtctgcttctct
ctgtgaaagttcttaaacttttgtttattgtttcagtaaacaagctttac
tcgataaaaggaaagagctagatcggtagcttcacaaactcccagtgata
ttcttctgacgtgcgctgccccagttttgtaaatgagaagccaggccatc
tcagttctctctctaagcagtaccagctgtcttctctttccagcactgca
gagatgctttgaagcgacttctgaattgttggcaacatgagtgcagaaag
atgtgaagaccataatagctgggaaaggttatccagtttcacataattga
ctacggcaatataaaatattgcctgctctgtttggtaacgaaacagatat
tgctttcttccctgtttgaaagggaacaaagcaaacagaattgcctctgt
tgttaagtttccaggttaaaagtcgaaaatctgggttgtaaagtatgctt
tttactggctgtgtttgggaaattgacattcaatcctgttgtacagacaa
tatgttttcagcctaatgaattctgtacttttcccaccaactatttagta
gagggcaaaggggctactaagacagaaaccagtcatttgaaagtgtttac
gtccacataacagtcaagtaaaataaattcatcctctctctttctccctc
tctctctctccctctctctctctcctcatctcaagagagtatcttagaat
tttcttttcttgctaaagaaaatttaaaaaaaatcacaacccagcattaa
ccttgtagagcagaatttggtagtcgtgtgttaatcccgtcccagagtgc
ttaagtctagaaagcaaatttttagtgaaaaaaggaatcttttatcttgt
tcttcatgaccattacattatttgaaaaccaaaggctaagtagacttaaa
tccttgcctttactttgggagtgactctcaggccttgtggcctgctggga
agtcttgaccagccatcagaaaaaagcatctgttgaacgaaccagctttg
ttactcctccatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88708076_88709196
seq2: B6Ng01-097J23.b_49_1176

seq1  GAATTCTAGCCACATAATCTTCTACTCTCTATAAAATCCCTGGTCTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCACATAATCTTCTACTCTCTATAAAATCCCTGGTCTTAGG  50

seq1  TATTTTATTATAGCAATAGAAAATGCACTGAGACAAATGAGATCAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTATAGCAATAGAAAATGCACTGAGACAAATGAGATCAGTGAA  100

seq1  TTGGGCCATTTAGAGTTTCAAAGAAACACACTGGTCTGCTGAAAACTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCATTTAGAGTTTCAAAGAAACACACTGGTCTGCTGAAAACTAAT  150

seq1  TTTAACATCTTTTCATTTGTAAAGTCCAGACTATCTATATGAATTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATCTTTTCATTTGTAAAGTCCAGACTATCTATATGAATTCCTGG  200

seq1  CAAAAAAACCTGAAGGTGAGATATCCAGACAATAATTAACTAATCAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACCTGAAGGTGAGATATCCAGACAATAATTAACTAATCAATCC  250

seq1  AACAACGTGGACAAAGGAGCTGTTCCATGGGCGTCTGATGCTCCTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGTGGACAAAGGAGCTGTTCCATGGGCGTCTGATGCTCCTTCAGC  300

seq1  TCTTGGAACCCTTCCTTTCAGAAACACCATGGGATTCATCTCTAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACCCTTCCTTTCAGAAACACCATGGGATTCATCTCTAAATAAA  350

seq1  ACAAAGTCCTCAGATATAAGGGGAATACCAGGTTGAAAAGATTCTATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCCTCAGATATAAGGGGAATACCAGGTTGAAAAGATTCTATCCC  400

seq1  GAACTTGGGCCAGTGCTGGAAGCTCTATGGCAAGAGGCTTTGCTCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGGCCAGTGCTGGAAGCTCTATGGCAAGAGGCTTTGCTCTGTTC  450

seq1  TGCCTTCTGTCACTGTGGATCATGATCTGTAACTTTCAGCTTCATTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGTCACTGTGGATCATGATCTGTAACTTTCAGCTTCATTCTCA  500

seq1  GGGTTCTGTCACAGTATGACTTTAGCTTGTAAGTAGCTAACTTTCAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTCACAGTATGACTTTAGCTTGTAAGTAGCTAACTTTCAAACT  550

seq1  CTGCGGGGGCTTCAAGATATCACTAAAAGTCACTAGAAGCCTTTTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGGGCTTCAAGATATCACTAAAAGTCACTAGAAGCCTTTTAAGTG  600

seq1  CTGACTCTATGGTATTTGAAGGAGAAACATTTAGTAAATTGGTGTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTATGGTATTTGAAGGAGAAACATTTAGTAAATTGGTGTCTTCT  650

seq1  AGCACATTTGAAGTCTAAATATCTGCTTTCATAATGTGAATATTTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTGAAGTCTAAATATCTGCTTTCATAATGTGAATATTTTCAAG  700

seq1  TTTCAGCACATTTTTAAATTTTCCGATATAAATAACAAGTGGCTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCACATTTTTAAATTTTCCGATATAAATAACAAGTGGCTTTTAAA  750

seq1  ACCCTGCTTATGTTCTTAGAAAATTTACTAAGCGCCACATATGGTTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTATGTTCTTAGAAAATTTACTAAGCGCCACATATGGTTGAGC  800

seq1  CCACTAACTATAGAATGAATGAAAGTTGAGAAAGAGTCAGTGGCTATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACTATAGAATGAATGAAAGTTGAGAAAGAGTCAGTGGCTATTGA  850

seq1  AGTCCCTGAGCATAATTATAAAAGGTAGACAGTGTATTTGAAAGAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGAGCATAATTATAAAAGGTAGACAGTGTATTTGAAAGAAAATA  900

seq1  TCTTTCTGAAACCCACCAGTACAGACTAAATTTAAGTCAATAAAAGTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGAAACCCACCAGTACAGACTAAATTTAAGTCAATAAAAGTTTA  950

seq1  AAAACAATAAAGCTTGCATAATTCTTACCAAATCTAT--CTTTCTAATAA  998
      |||||||||||||||||||||||||||||||||||||   ||||||   |
seq2  AAAACAATAAAGCTTGCATAATTCTTACCAAATCTATTCTTTTCTA--TA  998

seq1  AGAAGACAAAG-AAAAGTACTGAAAAG-AACAA-TTCCTGATGGT-ATGG  1044
      ||||||||||| ||||||||||||||| ||||| ||| ||||||| ||||
seq2  AGAAGACAAAGAAAAAGTACTGAAAAGAAACAATTTCTTGATGGTAATGG  1048

seq1  ATAA-AACAATTCTAGGGAATATGTT-CAG-CAAATAAAATGAGGTTCCC  1091
      |||| |||| |||||||  ||||||| ||| |||||||||||||||||| 
seq2  ATAATAACATTTCTAGG--ATATGTTCCAGCCAAATAAAATGAGGTTCCT  1096

seq1  TGAGATG-TTTCGAAGAA--GAAAGTCAACAAA  1121
      ||||||| ||||||||||   |||||| |||||
seq2  TGAGATGTTTTCGAAGAAAGAAAAGTC-ACAAA  1128

seq1: chr18_88842912_88844055
seq2: B6Ng01-097J23.g_67_1230 (reverse)

seq1  ATATGGA-GAGT-ACAAAGCTGGTTCTTTC-ACAGCTGCTTTTCT-AGAT  46
      ||||||| |||| ||||||||||||| ||| |||| ||||||| |  |||
seq2  ATATGGAGGAGTAACAAAGCTGGTTCGTTCAACAGATGCTTTTTTCTGAT  50

seq1  GCCT-GTC-AGACT--CCAGCAAGCAAATAGCCCTGAGA---CCACACAA  89
      | || ||| |||||  |||||| || |  || |||||||    | | |||
seq2  GGCTGGTCAAGACTTCCCAGCAGGCCACAAGGCCTGAGAGTCACTCCCAA  100

seq1  AGTAAAAGCAAG--ATTAAGTCTAACTTACCCTTT-GATTTCAAATAATG  136
      |||||| |||||   |||||||| ||||| ||||| | ||||||||||||
seq2  AGTAAAGGCAAGGATTTAAGTCT-ACTTAGCCTTTGGTTTTCAAATAATG  149

seq1  TAATGGCAATG-AGAACAA-AAAAAAAATT-CTTTTTTCACTAAAAATTT  183
      ||||||  ||| ||||||| | |||| ||| |||||||||||||||||||
seq2  TAATGGTCATGAAGAACAAGATAAAAGATTCCTTTTTTCACTAAAAATTT  199

seq1  GC-TTCTAGACCTAAGCACTCT-GGACGGGATTAACACACGACTACC-AA  230
      || |||||||| |||||||||| |||||||||||||||||||||||| ||
seq2  GCTTTCTAGACTTAAGCACTCTGGGACGGGATTAACACACGACTACCAAA  249

seq1  TTCTGCTCTACAAGG-TAATGCTGGGTTGTGATTTTTTTTAAATTTTCTT  279
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTACAAGGTTAATGCTGGGTTGTGATTTTTTTTAAATTTTCTT  299

seq1  TAGCAAGAAAAGAAAATTCTAAGATACTCTCTTGAGATGAGGAGAGAGAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGAAAAGAAAATTCTAAGATACTCTCTTGAGATGAGGAGAGAGAG  349

seq1  AGAGGGAGAGAGAGAGAGGGAGAAAGAGAGAGGATGAATTTATTTTACTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGAGAGAGAGGGAGAAAGAGAGAGGATGAATTTATTTTACTT  399

seq1  GACTGTTATGTGGACGTAAACACTTTCAAATGACTGGTTTCTGTCTTAGT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTATGTGGACGTAAACACTTTCAAATGACTGGTTTCTGTCTTAGT  449

seq1  AGCCCCTTTGCCCTCTACTAAATAGTTGGTGGGAAAAGTACAGAATTCAT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTTGCCCTCTACTAAATAGTTGGTGGGAAAAGTACAGAATTCAT  499

seq1  TAGGCTGAAAACATATTGTCTGTACAACAGGATTGAATGTCAATTTCCCA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAAAACATATTGTCTGTACAACAGGATTGAATGTCAATTTCCCA  549

seq1  AACACAGCCAGTAAAAAGCATACTTTACAACCCAGATTTTCGACTTTTAA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCCAGTAAAAAGCATACTTTACAACCCAGATTTTCGACTTTTAA  599

seq1  CCTGGAAACTTAACAACAGAGGCAATTCTGTTTGCTTTGTTCCCTTTCAA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACTTAACAACAGAGGCAATTCTGTTTGCTTTGTTCCCTTTCAA  649

seq1  ACAGGGAAGAAAGCAATATCTGTTTCGTTACCAAACAGAGCAGGCAATAT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGAAAGCAATATCTGTTTCGTTACCAAACAGAGCAGGCAATAT  699

seq1  TTTATATTGCCGTAGTCAATTATGTGAAACTGGATAACCTTTCCCAGCTA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGCCGTAGTCAATTATGTGAAACTGGATAACCTTTCCCAGCTA  749

seq1  TTATGGTCTTCACATCTTTCTGCACTCATGTTGCCAACAATTCAGAAGTC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCTTCACATCTTTCTGCACTCATGTTGCCAACAATTCAGAAGTC  799

seq1  GCTTCAAAGCATCTCTGCAGTGCTGGAAAGAGAAGACAGCTGGTACTGCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAGCATCTCTGCAGTGCTGGAAAGAGAAGACAGCTGGTACTGCT  849

seq1  TAGAGAGAGAACTGAGATGGCCTGGCTTCTCATTTACAAAACTGGGGCAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAACTGAGATGGCCTGGCTTCTCATTTACAAAACTGGGGCAG  899

seq1  CGCACGTCAGAAGAATATCACTGGGAGTTTGTGAAGCTACCGATCTAGCT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGTCAGAAGAATATCACTGGGAGTTTGTGAAGCTACCGATCTAGCT  949

seq1  CTTTCCTTTTATCGAGTAAAGCTTGTTTACTGAAACAATAAACAAAAGTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTATCGAGTAAAGCTTGTTTACTGAAACAATAAACAAAAGTT  999

seq1  TAAGAACTTTCACAGAGAGAAGCAGACAAAACACACACACACAAGAAAAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTTTCACAGAGAGAAGCAGACAAAACACACACACACAAGAAAAA  1049

seq1  CTCAATTCAAAAAAAAATAATAAAGGCAGAAAATGAAATCTTCTAATTTA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCAAAAAAAAATAATAAAGGCAGAAAATGAAATCTTCTAATTTA  1099

seq1  TAGCAATGTTGTTCTCAAAGGTACAGCTCTGGGATAACTCTACCACCAAG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTTGTTCTCAAAGGTACAGCTCTGGGATAACTCTACCACCAAG  1149

seq1  CTGATGTGTGAATTC  1144
      |||||||||||||||
seq2  CTGATGTGTGAATTC  1164