BAC Information

Click to search

BAC

Clone NameB6Ng01-097L23
Chromosome18 (Build37)
Map Location 34,405,161 - 34,577,226
singlet/doubletdoublet
Overlap geneApc, Srp19, Reep5, Pkd2l2
Upstream geneEG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313
Downstream gene2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097L23.bB6Ng01-097L23.g
ACCDH908032DH908033
length9881,067
definitionDH908032|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L23, 5' end.DH908033|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,576,184 - 34,577,226)(34,405,161 - 34,406,219)
sequence
gaattcacacacacacacactaagagctagacttttgtacttaccatgaa
aattacttgtcctgattctgaaattgctcctacacggcaaaataattttt
gttgttgctatttaaaacattttaagttgggtgaaagcattcattacaca
aacttgactccctgaatttgattcctggaacccacagtgaggggaaaatg
gactccccaacactgtcctctgacctgcacacctggcactatggtgcaac
ccaaacataggcatgcacacacacccagagaccataaaacacaccatatc
atatcatatagctcttcatgtctccaaacatgccctgacataagaacacg
agtgtggggttggtgttgcttcattctcttctgcattattgtcagaacat
catatttatcttaaagctatgatgttaacctctgcacaggtatgcggggc
ctgtacaccctgggaaaggctttggatcctttaaaaattccgtttcctaa
aataaggctcccgagccactcacctgatgatgcaaaacaggttgacatta
gcattgcacagggagaaatcaataaaaacagccctggtgcctctgctaat
ccagttgttcagtcaaaggtcaacaaatttggctgttggtttcagatttt
tgatttttgataacgtgactatatatcctcacatactcggtatacgccaa
caaactgccagtgccatggggcaatgcagtaagaaggagtgtgcgtccat
ctgaggagcgtcaaagaaaaaagggggggacagaaagcagcccagaattt
aacggaatctttggtttaaaaccgttgaaatacaaagttccaaagtagcc
tacacattgtcttaattgttacatcggacaacactcagaaggttttactt
gtaccggaaatgtgcgcttctcatggctttgatggactcttgtacaacac
gtgagacggcattccgctgccccagacatgcacacaca
gaattcagtcttgaggaagctggcttaaaaaggcttttattggataattg
aggtttttgttttggcttgtttttttaataatccgtatggccgcgtgatt
acagtataaaaagtctttgggtttcttgtacttgaactgtagtggttcag
cagcatataccgagcatagctttcattgaaatgtagtcatttggtgaacc
atgtctaagaaggcagtgggttcattctccagcgcccctcggtcattgaa
ccactcaccactagtagtgcatgtggtaaaaatgttgacaggttttgaat
gtcaactgatttcttaaagtctaagttacttttaactcatagcctgagtc
aaagtattaggcttaattgtttcatagactattagaaaattgttttgagg
aacttttaaagtacattcttgattttacaagatgatttttctttctggaa
ggtcagtcatgtatgagaaattctgagtgtgtcacagatgatgactgtac
agtgagtgagtcctacagagtgagtgcgactcttccagttagaagatctt
aaaagcctttgtaaaaccaagccatttcatgaaaggcacttaggatccag
tcaaggcgattcacaggtttcctttgttcagtatgacttttttttctaaa
tatgttaagactttagtgtataattctagttacagttacagtgtggtcag
tctacagaaaaagaaaaaagaacttattttccacaatctcaacttcaaaa
gaataactctatttttgttgtgttttatctctaagattttaattttttat
tttatttgtgtatttgtgtgtgggtttgtgcgtatgagtgcattgctggg
ttgaagtctgggagagggagtcagctgctcttggctatggagttacaggc
ataaggttgcaggcagtgtgtgcaggagcaataaagttcttcaccccaca
ccctctccagccctcatttttctattacttatatataaaatgtctaagaa
agttgaattgccctttaatgtgctcttaacagctttcttgttcttattgg
aaaaaatccaagaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34576184_34577226
seq2: B6Ng01-097L23.b_49_1036 (reverse)

seq1  TGTGTGTGCATGTGTGTATGTGTGTCTGTGCATGTCTACCTATCTATCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGAATGCAGACACACCTGTA  100
            ||||||||  |||||| | | | | |||||| | | ||| ||| 
seq2  ------TGTGTGTGCATGTCTGGGGCAGCG-GAATGCCGTCTCACGTGTT  43

seq1  CTACAAGAGTACCACAAAGCCATTGGATGCGCCCATTGTCCGGGACAAGT  150
       ||||||||| |  |||||||||  || |||| |||| ||||| ||||| 
seq2  GTACAAGAGTCCATCAAAGCCATGAGAAGCGCACATT-TCCGGTACAAG-  91

seq1  TAAAACCTGCTGAGTGTTGGCCCTTGTAACAAATTAACTCAATGTCTAGG  200
      |||||||| |||||||||| ||  |||||| ||||||  |||||| ||||
seq2  TAAAACCTTCTGAGTGTTGTCCGATGTAAC-AATTAAGACAATGTGTAGG  140

seq1  CTACTTTTGAACTTTCTATTTCAACTGTTTTAAATCAAAGATTCCCTTAA  250
      ||||||| ||||||| ||||||||| |||||||| |||||||||| ||||
seq2  CTACTTTGGAACTTTGTATTTCAACGGTTTTAAACCAAAGATTCCGTTAA  190

seq1  ATTCTTGGGATGCTTTCT-CACCTCCCTTTTTTCTTTGATGCTCCACAGA  299
      |||| |||| ||||||||   || ||||||||||||||| ||||| ||||
seq2  ATTC-TGGGCTGCTTTCTGTCCCCCCCTTTTTTCTTTGACGCTCCTCAGA  239

seq1  TGGACGCACACACCTTCTTCCCGCACTGCCCCATGGCACTGGGGGTTTGT  349
      ||||||||||| ||||||| | ||| ||||||||||||||||  ||||||
seq2  TGGACGCACACTCCTTCTTACTGCATTGCCCCATGGCACTGGCAGTTTGT  289

seq1  TGGCGTATACCGAG-ATG-GAGGATATATAGTCACGTTATC-AAAATC-A  395
      |||||||||||||| ||| |||||||||||||||||||||| |||||| |
seq2  TGGCGTATACCGAGTATGTGAGGATATATAGTCACGTTATCAAAAATCAA  339

seq1  AAATCTGAAACCAA-AGCCAAATTTGTTGACCTTCGACTGAACAACTGGA  444
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AAATCTGAAACCAACAGCCAAATTTGTTGACCTTTGACTGAACAACTGGA  389

seq1  TTAGCAGAGGCACCAGGGCTGTTTTTATTGATTTCTCCCTGTACAATGCT  494
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAGCAGAGGCACCAGGGCTGTTTTTATTGATTTCTCCCTGTGCAATGCT  439

seq1  AATGTCAACCTGTTTTGCATCATCAGGTGAGTGGCTCGGGAGCCTTATCT  544
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTCAACCTGTTTTGCATCATCAGGTGAGTGGCTCGGGAGCCTTATTT  489

seq1  TAGGAAACGGAATTTTTAAAGGATCCAAAGCCTTTCCCAGTGTGTACAGG  594
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGAAACGGAATTTTTAAAGGATCCAAAGCCTTTCCCAGGGTGTACAGG  539

seq1  CCCCGCATACCTGTGCAGAGGTTAACATCATAGCTTTAAGATAAATATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCATACCTGTGCAGAGGTTAACATCATAGCTTTAAGATAAATATGA  589

seq1  TGTTCTGACAATAATGCAGAAGAGAATGAAGCAACACCAACCCCACACTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGACAATAATGCAGAAGAGAATGAAGCAACACCAACCCCACACTC  639

seq1  GTGTTCTTATGTCAGGGCATGTTTGGAGACATGAAGAGCTATATGATATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTATGTCAGGGCATGTTTGGAGACATGAAGAGCTATATGATATG  689

seq1  ATATGCTGTGTTTTATGGTCTCTGGGTGTGTGTGCATGCCTATGCTTGGG  794
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATGGTGTGTTTTATGGTCTCTGGGTGTGTGTGCATGCCTATGTTTGGG  739

seq1  TTGCACCATAGTGCCAGGTGTGCAGGTCAGAGGACAGTGTTGGGGAGTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCATAGTGCCAGGTGTGCAGGTCAGAGGACAGTGTTGGGGAGTCC  789

seq1  ATTTTCCCCTCACTGTGGGTTCCAGGAATCAAATTCAGGGAGTCAAGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCCTCACTGTGGGTTCCAGGAATCAAATTCAGGGAGTCAAGTTT  839

seq1  GTCTAATGAATGCTTTCACCCAACTTAAAATGTTTTAAATAGCAACAACA  944
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGAATGCTTTCACCCAACTTAAAATGTTTTAAATAGCAACAACA  889

seq1  AAAATTATTTTGCCGTGTAGGAGCAATTTCAGAATCAGGACAAGTAATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTGCCGTGTAGGAGCAATTTCAGAATCAGGACAAGTAATTT  939

seq1  TCATGGTAAGTACAAAAGTCTAGCTCTTTGTGTGTGTGTGTGTGAATTC  1043
      |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCATGGTAAGTACAAAAGTCTAGCTCTTAGTGTGTGTGTGTGTGAATTC  988

seq1: chr18_34405161_34406219
seq2: B6Ng01-097L23.g_68_1134

seq1  GAATTCAGTCTTGAGGAAGCTGGCTTAAAAAGGCTTTTATTGGATAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTGAGGAAGCTGGCTTAAAAAGGCTTTTATTGGATAATTG  50

seq1  AGGTTTTTGTTTTGGCTTGTTTTTTTAATAATCCAGATGGCCGCATGATT  100
      ||||||||||||||||||||||||||||||||||  |||||||| |||||
seq2  AGGTTTTTGTTTTGGCTTGTTTTTTTAATAATCCGTATGGCCGCGTGATT  100

seq1  ACAGTATAAAAAGTCTTTGGGTTTCTTGTACTTGAACTGTAGTGGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAAAAAGTCTTTGGGTTTCTTGTACTTGAACTGTAGTGGTTCAG  150

seq1  CAGCATATACCGAGCATAGCTTTCATTGAAATGTAGTCATTTGGTGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATACCGAGCATAGCTTTCATTGAAATGTAGTCATTTGGTGAACC  200

seq1  ATGTCTAAGAAGGCAGTGGGTTCATTCTCCAGCGCCCCTCGGTCATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGAAGGCAGTGGGTTCATTCTCCAGCGCCCCTCGGTCATTGAA  250

seq1  CCACTCACCACTAGTAGTGCATGTGGTAAAAATGTTGACAGGTTTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACCACTAGTAGTGCATGTGGTAAAAATGTTGACAGGTTTTGAAT  300

seq1  GTCAACTGATTTCTTAAAGTCTAAGTTACTTTTAACTCATAGCCTGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGATTTCTTAAAGTCTAAGTTACTTTTAACTCATAGCCTGAGTC  350

seq1  AAAGTATTAGGCTTAATTGTTTCATAGACTATTAGAAAATTGTTTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTAGGCTTAATTGTTTCATAGACTATTAGAAAATTGTTTTGAGG  400

seq1  AACTTTTAAAGTACATTCTTGATTTTACAAGATGATTTTTCTTTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAAGTACATTCTTGATTTTACAAGATGATTTTTCTTTCTGGAA  450

seq1  GGTCAGTCATGTATGAGAAATTCTGAGTGTGTCACAGATGATGACTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCATGTATGAGAAATTCTGAGTGTGTCACAGATGATGACTGTAC  500

seq1  AGTGAGTGAGTCCTACAGAGTGAGTGCGACTCTTCCAGTTAGAAGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGAGTCCTACAGAGTGAGTGCGACTCTTCCAGTTAGAAGATCTT  550

seq1  AAAAGCCTTTGTAAAACCAAGCCATTTCATGAAAGGCACTTAGGATCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTTTGTAAAACCAAGCCATTTCATGAAAGGCACTTAGGATCCAG  600

seq1  TCAAGGCGATTCACAGGTTTCCTTTGTTCAGTATGAC-TTTTTTTCTAAA  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAAGGCGATTCACAGGTTTCCTTTGTTCAGTATGACTTTTTTTTCTAAA  650

seq1  TATGTTAAGACTTTAGTGTATAATTCTAGTTACAGTTACAGTGTGGTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAGACTTTAGTGTATAATTCTAGTTACAGTTACAGTGTGGTCAG  700

seq1  TCTACAGAAAAAGAAAAAAGAACTTATTTTCCACAATCTCAACTTCAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAAAAGAAAAAAGAACTTATTTTCCACAATCTCAACTTCAAAA  750

seq1  GAATAACTCTATTTTTGTTGTGTTTTATCTCTAAGATTT--AATTTTTAT  797
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  GAATAACTCTATTTTTGTTGTGTTTTATCTCTAAGATTTTAATTTTTTAT  800

seq1  TTTATTTGTGTATTTGTGTGTGGGTTTGTGCGTATGAGTGCATTGCT-GG  846
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTATTTGTGTATTTGTGTGTGGGTTTGTGCGTATGAGTGCATTGCTGGG  850

seq1  TTGAAGTCT-GGAGAGGGAGTCAGCTGCCCTTGGCTATGGAGTTACAGGC  895
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TTGAAGTCTGGGAGAGGGAGTCAGCTGCTCTTGGCTATGGAGTTACAGGC  900

seq1  ATAAGGTTGCAGGCAGTGTGTGCAGGAGCAGTAGAGTTCTTCACCACCAC  945
      |||||||||||||||||||||||||||||| || ||||||||||| ||||
seq2  ATAAGGTTGCAGGCAGTGTGTGCAGGAGCAATAAAGTTCTTCACC-CCAC  949

seq1  ACCCTCTCCAGCCCTCA-TTTTCTATTAC-TATATATAAAATGTCTTAGG  993
      ||||||||||||||||| ||||||||||| |||||||||||||||| || 
seq2  ACCCTCTCCAGCCCTCATTTTTCTATTACTTATATATAAAATGTCTAAGA  999

seq1  AAGTAGAATTGCCTCTTAA-ATGCTACTTAACAGC-TTCTTG-TCATATT  1040
      |||| ||||||||  ||||  |||| ||||||||| |||||| || ||||
seq2  AAGTTGAATTGCCCTTTAATGTGCT-CTTAACAGCTTTCTTGTTCTTATT  1048

seq1  TGAAAAAATACAAGAAGTT  1059
       |||||||| |||||||||
seq2  GGAAAAAATCCAAGAAGTT  1067