BAC Information

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BAC

Clone NameB6Ng01-097N11
Chromosome18 (Build37)
Map Location 23,244,307 - 23,245,412
singlet/doubletsinglet
Overlap geneLOC100040579
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3, Nol4
Downstream geneLOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097N11.bB6Ng01-097N11.g
ACCDH908102DH908103
length1,0991,186
definitionDH908102|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N11, 5' end.DH908103|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttatttatgcacaaagtatgatcaccttcaattgtctactt
tctcctccaactaccacagtatctctggatactttcaagttcttctcatt
catgataagaatatactttatcagcttagagtgggaccacatttgcttca
tgcacaaattacctaatggttgaaaagttgttgtagctccaacagcatcc
actccgctctactttcaaagtgctctcattctgtaatccagtttgaacaa
gtaaccaccactccccactccgctctactttcaaggctttctcattctat
actccacgttttggactgttttcctctctgttaaggcagtcagatctaaa
gtcaggcagttaaaaacattttaacggttttttttttatcatacatggaa
aatatcacatctacacacatttgttgttcaccgcagatcacgcaatcaaa
ccaaagtagaaaacccagggactgcgcagttggcagatatgtaatatgat
ccttcatcgccatcaggagctactcataagcactaagatgctgcccttcc
ttcgtgatccttttccaagtaaattgtccatcctagaaaattggaggttc
acagcctggtgactcctgtttcccgtgattccttaaagagcttgccagac
aataaagggaaaatgttgtatagtgatcaatagctacagtgtcctccaga
ggtcatatgttagcacatgaatccccagtccagagatgtttggaaatgaa
tcctttgtgtggtatttagaattagatgtgtttgagtgcataagatcatc
atgacagaattaaagcgcctttgagaaaaggcaccagtaaacgtgctcct
tgtcggtcagtgccatgggaagacatgcatagagacaggcaggccatctg
cagtgaagtaaaggacccttcacccgagaccagctgatgggtacctgata
cgacactccaccttcttcttgtcaggcatttacatttgtccaagtcactg
tttatcatacttctgttaggtgtagaggcagactaaaagatgattttttc
tagcccagtttcagtgtaacccagacctacgagacaggccatgcttcta
gaattcaacatctagtccaaaacaacctggaggggcctgtgccagcagga
acagggacacaggaaacatgctcgaccagctgctggggttagttctagtc
atagccagcccctcgtcaccttgggcatgaactcagtggatggtcccaag
gtccccagaggactccccatgccacagaggccctagcacacccaggatct
tgggatcactggtgagtgaaatgcaacatctattccaaaacaacccagag
gggcttgggccagcaggaaccaggataaaggaaacctgctgactgggatt
acgttcagatctgcctcagactcgaatcaccttgggcacaaactcagagg
aaggtcccatggtccccaaaggactctccatgctgcaggcaccatagcac
acccaggatcttaggatcactgaggagagtcagccttcagagagggctat
gaccacgggactcaggtaagagtgccaccttatatccaggttctctcaaa
gaccagtccgtaaaggagagattgtgggcctcagaagcaacagaggttct
tggactgggtctctttcagccttcatctttcaccaagaggtgcaccttct
ctgcaagaggagagcttgcctgcagttagtgctctgacaactgggactca
ggagagagttggactcccaagagtgaagacagaggctaacagaatcacaa
aaggaacaagctccaccaagagacagctagaacacctaacaccagagatt
accagatggcaaaaggcaaatgtaagaatcttacctacagaaaccaagac
agctcaccatcatcagaacccagcactcccacctcagccagtcctggata
ccccacacaccaaaaagcaagattcacatttaaaatcatatctcatgatg
ctggtagaggattttaagaagggcataataagtcacttaaagaaatacag
atgagactgctaaacaggagaggctctaaagagagcacaaaaattcctca
agatacaagaaacactgctaaacagtagaagaccttagaggaaaacacaa
aaatcttaagattacagaaaccacaaaagttgatggaatggacaaactcc
agatctcaatgagtgaccttagactaggtacaccttggaatgcaaccttg
aacatagttatgggcgaacctatgactgcggacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23244307_23245412
seq2: B6Ng01-097N11.b_49_1147

seq1  GAATTCCATTTATTTATGCACAAAGTATGATCACCTTCAATTGTCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTATTTATGCACAAAGTATGATCACCTTCAATTGTCTACTT  50

seq1  TCTCCTCCAACTACCACAGTATCTCTGGATACTTTCAAGTTCTTCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCAACTACCACAGTATCTCTGGATACTTTCAAGTTCTTCTCATT  100

seq1  CATGATAAGAATATACTTTATCAGCTTAGAGTGGGACCACATTTGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAGAATATACTTTATCAGCTTAGAGTGGGACCACATTTGCTTCA  150

seq1  TGCACAAATTACCTAATGGTTGAAAAGTTGTTGTAGCTCCAACAGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATTACCTAATGGTTGAAAAGTTGTTGTAGCTCCAACAGCATCC  200

seq1  ACTCCGCTCTACTTTCAAAGTGCTCTCATTCTGTAATCCAGTTTGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCTCTACTTTCAAAGTGCTCTCATTCTGTAATCCAGTTTGAACAA  250

seq1  GTAACCACCACTCCCCACTCCGCTCTACTTTCAAGGCTTTCTCATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACCACTCCCCACTCCGCTCTACTTTCAAGGCTTTCTCATTCTAT  300

seq1  ACTCCACGTTTTGGACTGTTTTCCTCTCTGTTAAGGCAGTCAGATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGTTTTGGACTGTTTTCCTCTCTGTTAAGGCAGTCAGATCTAAA  350

seq1  GTCAGGCAGTTAAAAACATTTTAACGGTTTTTTTTTTATCATACATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCAGTTAAAAACATTTTAACGGTTTTTTTTTTATCATACATGGAA  400

seq1  AATATCACATCTACACACATTTGTTGTTCACCGCAGATCACGCAATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACATCTACACACATTTGTTGTTCACCGCAGATCACGCAATCAAA  450

seq1  CCAAAGTAGAAAACCCAGGGACTGCGCAGTTGGCAGATATGTAATATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAGAAAACCCAGGGACTGCGCAGTTGGCAGATATGTAATATGAT  500

seq1  CCTTCATCGCCATCAGGAGCTACTCATAAGCACTAAGATGCTGCCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCGCCATCAGGAGCTACTCATAAGCACTAAGATGCTGCCCTTCC  550

seq1  TTCGTGATCCTTTTCCAAGTAAATTGTCCATCCTAGAAAATTGGAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGATCCTTTTCCAAGTAAATTGTCCATCCTAGAAAATTGGAGGTTC  600

seq1  ACAGCCTGGTGACTCCTGTTTCCCGTGATTCCTTAAAGAGCTTGCCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGTGACTCCTGTTTCCCGTGATTCCTTAAAGAGCTTGCCAGAC  650

seq1  AATAAAGGGAAAATGTTGTATAGTGATCAATAGCTACAGTGTCCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGGAAAATGTTGTATAGTGATCAATAGCTACAGTGTCCTCCAGA  700

seq1  GGTCATATGTTAGCACATGAATCCCCAGTCCAGAGATGTTTGGAAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATGTTAGCACATGAATCCCCAGTCCAGAGATGTTTGGAAATGAA  750

seq1  TCCTTTGTGTGGTATTTAGAATTAGATGTGTTTGAGTGCATAAGATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGTGGTATTTAGAATTAGATGTGTTTGAGTGCATAAGATCATC  800

seq1  ATGACAGAATTAAAGCGCCTTTGAGAAAAGGCACCAGTAAACGTGCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAATTAAAGCGCCTTTGAGAAAAGGCACCAGTAAACGTGCTCCT  850

seq1  TGTCGGTCAGTGCCATGGGAAGACATGCATAGAGACAGGCAGGCCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTCAGTGCCATGGGAAGACATGCATAGAGACAGGCAGGCCATCTG  900

seq1  CAGTGAAGTAAAAGAACCTTCACCCGAGACCAGCTGATGGGTACCTGATA  950
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGTAAAGGACCCTTCACCCGAGACCAGCTGATGGGTACCTGATA  950

seq1  CGACACTCCACCTTCTTC-TGTCAGGCATGTACATCTGTCCAAGTCACTG  999
      |||||||||||||||||| |||||||||| ||||| ||||||||||||||
seq2  CGACACTCCACCTTCTTCTTGTCAGGCATTTACATTTGTCCAAGTCACTG  1000

seq1  TTTATCATAC-TCTGTTAGGTGTAGAAGCAGACTAAAAGATGATGTTTTT  1048
      |||||||||| ||||||||||||||| ||||||||||||||||  |||||
seq2  TTTATCATACTTCTGTTAGGTGTAGAGGCAGACTAAAAGATGA--TTTTT  1048

seq1  CCTAGCCCAGTTTCAGGTGTAACCCAGACCTAC-AGACAGCCAATGCTCT  1097
       |||||||||||||| ||||||||||||||||| ||||||        | 
seq2  TCTAGCCCAGTTTCA-GTGTAACCCAGACCTACGAGACAG-------GCC  1090

seq1  ATGCTTCTA  1106
      |||||||||
seq2  ATGCTTCTA  1099