BAC Information

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BAC

Clone NameB6Ng01-098C21
Chromosome18 (Build37)Y (Build37)
Map Location 71,742,067 - 71,743,154573,461 - 573,594
singlet/doubletsingletsinglet
Overlap geneDcc
Upstream geneMbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C21.bB6Ng01-098C21.g
ACCDH908343DH908344
length1,093180
definitionDH908343|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C21, 5' end.DH908344|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,742,067 - 71,743,154)(573,461 - 573,594)
sequence
gaattctttctcagaattttactagctgtgctgcctttggtcaatgagta
attattagtctgtatatctaaaaatataaaattaatagtggtatgcggtg
tgtgtttatgtgtgtgtgtgtgtgttgcattgatgtattttagacttaac
attcttataatggtggcttgcacattgaagaacacatgaagcaataactg
ataccaaagctccaggaagagtctagtatgagcctactttgaaaagctga
agaaactggagttagttttctacaagggatggcagcccctgtggacacat
tcaccatagaggaccagagcttgcaaactcatcctgatttgattccacct
tgtactttaccctttgactgtcctaccatagtactccttcagttggttgc
cctacatgctgcttctggaaacatctacagacacacccagaacattgtct
gattaattttctactggtcttctaatctagtcaccttgacaatcaagata
aagcatataaaatttgtaattttgtttccgtgtgtggggtgacaacattt
ggtatataagattgtgatacgtattaagtgaagcttatacatgtatctga
aacatcacttctttgcccatggcaacaaaaacaagctgttcctgtttaac
tagtgccatatataaaaaattgtgtgggttcaaaaattaaaatatatgaa
atacaggggcatttccctgacacttactttagagggagggattttattgc
tttcataaacatttatttccatttgacccccagataatgttgttatgata
atttccatttatagaagagaatgttccgatagactgagaaaaagtaccta
agcagctttgccaatagtagacagtagaaccagggatgcagatgcaaggt
gatcccttcaccctacacacaaataagaaatatcttcctttaaaagaact
agtaaaataagtaggcgttcagatgagagattaaacccttcataagcatc
atccacttaatccttcacagtagcctgggaagataggtagaataaggtgg
gtattttcattttgcaaatggaagctatgcagaggctcccaga
ctgatctttccaagacatttatcatgaatgggtgctggatttagtcagcc
atatttgggaagagaggccccttggtcttgcaaactttatatgccccagt
acaggggaaacacctggctaagaagtgggagagggtgggtagggaatcag
gggggtataggggactttagggatagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71742067_71743154
seq2: B6Ng01-098C21.b_46_1138 (reverse)

seq1  TCTGGGAGCCTC-CCAT-GCTT-CATTTGCAAAATGAAAATACCCACCTT  47
      ||||||||||||  ||| |||| |||||||||||||||||||||||||||
seq2  TCTGGGAGCCTCTGCATAGCTTCCATTTGCAAAATGAAAATACCCACCTT  50

seq1  ATTCTACCTATCTCACAGGGCTACTGTGAAGATTAAAGTGGATGATGCTT  97
      |||||||||||||  |  |||||||||||||  | |||||||||||||||
seq2  ATTCTACCTATCTTCCCAGGCTACTGTGAAGGATTAAGTGGATGATGCTT  100

seq1  ATAGAAGTGTTTTAATTCTCTCATCTGAACGCCTACTGTATTTTACTTGT  147
      || |||| ||||  | ||||||||||||||||||||| ||||||||| ||
seq2  AT-GAAGGGTTT--AATCTCTCATCTGAACGCCTACT-TATTTTACTAGT  146

seq1  TCCTTTTAAAGGAAGATATTTCTTATTTTGTGTGTAGGGTGAAGGGATCA  197
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  T-CTTTTAAAGGAAGATATTTCTTA-TTTGTGTGTAGGGTGAAGGGATCA  194

seq1  CCTTGCATCTGCAT-CCTGGTTCTACTGTCTACTATTGGCAAAGCTGCTT  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTGCATCTGCATCCCTGGTTCTACTGTCTACTATTGGCAAAGCTGCTT  244

seq1  AGGTACTATTTCTCAGTCTTTCTGAACATTCTCTTCTATAAATGGAAATT  296
      ||||||| ||||||||||| || |||||||||||||||||||||||||||
seq2  AGGTACTTTTTCTCAGTCTATCGGAACATTCTCTTCTATAAATGGAAATT  294

seq1  ATCATAACAACATTATCTGGGGGTCAAATGGAA--TAATGTTTATGAAAG  344
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  ATCATAACAACATTATCTGGGGGTCAAATGGAAATAAATGTTTATGAAAG  344

seq1  CAAT-AAATCCCT-CCTCT-AAGTAAGTGTCAGGG-AATGCCCCTGTATT  390
      |||| |||||||| ||||| ||||||||||||||| ||||||||||||||
seq2  CAATAAAATCCCTCCCTCTAAAGTAAGTGTCAGGGAAATGCCCCTGTATT  394

seq1  TCATATATTTTAATTTTTGAACCCACACAATTTTTTATATATGGCACTAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTTTAATTTTTGAACCCACACAATTTTTTATATATGGCACTAG  444

seq1  TT-AACAGGAACAGCTTGTTTTTGTTGCCATGGGCAAAGAAGTGATGTTT  489
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGGAACAGCTTGTTTTTGTTGCCATGGGCAAAGAAGTGATGTTT  494

seq1  CAGATACATGTATAAGCTTCACTTAATACGTATCACAATCTTATATACCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACATGTATAAGCTTCACTTAATACGTATCACAATCTTATATACCA  544

seq1  AATGTTGTCACCCCACACACGGAAACAAAATTACAAATTTTATATGCTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTCACCCCACACACGGAAACAAAATTACAAATTTTATATGCTTT  594

seq1  ATCTTGATTGTCAAGGTGACTAGATTAGAAGACCAGTAGAAAATTAATCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATTGTCAAGGTGACTAGATTAGAAGACCAGTAGAAAATTAATCA  644

seq1  GACAATGTTCTGGGTGTGTCTGTAGATGTTTCCAGAAGCAGCATGTAGGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTCTGGGTGTGTCTGTAGATGTTTCCAGAAGCAGCATGTAGGG  694

seq1  CAACCAACTGAAGGAGTACTATGGTAGGACAGTCAAAGGGTAAAGTACAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACTGAAGGAGTACTATGGTAGGACAGTCAAAGGGTAAAGTACAA  744

seq1  GGTGGAATCAAATCAGGATGAGTTTGCAAGCTCTGGTCCTCTATGGTGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATCAAATCAGGATGAGTTTGCAAGCTCTGGTCCTCTATGGTGAA  794

seq1  TGTGTCCACAGGGGCTGCCATCCCTTGTAGAAAACTAACTCCAGTTTCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACAGGGGCTGCCATCCCTTGTAGAAAACTAACTCCAGTTTCTT  844

seq1  CAGCTTTTCAAAGTAGGCTCATACTAGACTCTTCCTGGAGCTTTGGTATC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTCAAAGTAGGCTCATACTAGACTCTTCCTGGAGCTTTGGTATC  894

seq1  AGTTATTGCTTCATGTGTTCTTCAATGTGCAAGCCACCATTATAAGAATG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGCTTCATGTGTTCTTCAATGTGCAAGCCACCATTATAAGAATG  944

seq1  TTAAGTCTAAAATACATCAATGCAACACACACACACACACATAAACACAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTAAAATACATCAATGCAACACACACACACACACATAAACACAC  994

seq1  ACCGCATACCACTATTAATTTTATATTTTTAGATATACAGACTAATAATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATACCACTATTAATTTTATATTTTTAGATATACAGACTAATAATT  1044

seq1  ACTCATTGACCAAAGGCAGCACAGCTAGTAAAATTCTGAGAAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGACCAAAGGCAGCACAGCTAGTAAAATTCTGAGAAAGAATTC  1093

seq1: chrY_573461_573594
seq2: B6Ng01-098C21.g_126_251

seq1  TTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAG  50

seq1  GGG-AACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGC  99
      ||| ||||||  ||| ||||||||||||| ||||||||||| | ||    
seq2  GGGAAACACC-TGGCTAAGAAGTGGGAGAGGGTGGGTAGGGAATCA----  95

seq1  AGGGGGAGGATATAGGGGACTTTTGGGATAGCATT  134
          || || ||||||||||||| |||||||||||
seq2  ----GGGGGGTATAGGGGACTTTAGGGATAGCATT  126