BAC Information

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BAC

Clone NameB6Ng01-098D04
Chromosome18 (Build37)
Map Location 27,375,548 - 27,554,736
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D04.bB6Ng01-098D04.g
ACCDH908355DH908356
length976481
definitionDH908355|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D04, 5' end.DH908356|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,553,750 - 27,554,736)(27,375,548 - 27,376,034)
sequence
gaattcatgaggagtcataatgggtaacaggcagaaggtctatttaaaaa
aaaaaaaaacagtaaaaaaatatttggctccctgtgtcattcaactattt
aaaatgcatttaactttcagtaatatctaagagatagccccgtagttcac
aagacaaatttcactagatttttcagaaattataacctttcaaatatact
gatgagaaatttccactagaaaaaaaccataatttttatggtaggaaaaa
tattaatctttctcaaactgtctcatggtcacagctcctctgtaggctgc
gttttcatttgtctctctgaatgtgatctttctacttctgcagcattctt
tgtgctgtacaccatcaatattaatgcagtaaatgaaaggtcacctgcct
tttgagttactttggatgcagatgagaaggaagtaaagttctagatttgg
cttatttcttctgctcaaaacagcacactctcctgccaaatgtctcaact
cttgcccagggactttcctcacaaacttccattttcaagttctgagagtc
atcttatatgatgactcatatctatgtctatgtctatgtctatgtctatg
tctatgtctatgtctatgtctatgtctatgtctatgtctatgtctatgcc
tatgcctatgcctatgcctatgcctatgcctatacctatatctatctgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtataactagtattccctttattta
tcttttcatgtttatctattacaagttcatcctctgttttatgaggggac
cctattttgccccctaaagtcaaaacactgtttctttacagaggcatagc
atcttctagaatcgtccagtcaactagcttctttaatatttagagatgca
attgagagactaatagagctatcagtatacaaatgatggctacagtatat
ctgtaagagaagctggctggaataga
tctctacctcccagatgccccaccttctatattctgcctaagccataggt
ccttagatttattattgacagctgaaacatccataaagacataagatatt
ttctccacatatcccttcccactcttcttcaaattgatgcccattttcct
catcatcaattgatattctatagctatatgcatttgtatatacatatata
ttcatacatataacctgagtctatgtaacagtcctggaaaataatttgtg
tgttcttccctacagattaccatcacctcaatttccagctttacacaggt
gcctgtagacctttgcatagaattgagaccccgtaggcttttctctatcc
tgttttggtatgtctattgctgccatcgttgttcatctagtactttggca
gtcatgttggttagattttatggatatatcttctgatgttacaagagttc
tatatatattatatgtgtgtgtggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27553750_27554736
seq2: B6Ng01-098D04.b_45_1020 (reverse)

seq1  TCTATTTCCAGCCATGCTTCTCTCTACAGATATTCCTGTAGCCCATTCAT  50
      |||| ||||||||| |||||||| |||||||| | ||||||||   ||||
seq2  TCTA-TTCCAGCCA-GCTTCTCT-TACAGATA-TACTGTAGCC--ATCAT  44

seq1  TTTGTTATATCTGATGTGCTCTATTTAGTCTCTCAATTTGCATCTCTAAA  100
      ||   |||| |||||  |||||| |||||||||||| |||||||||||||
seq2  TT--GTATA-CTGAT-AGCTCTA-TTAGTCTCTCAA-TTGCATCTCTAAA  88

seq1  TATTAATGGAGCTAGTTGACTGGACGA-TCTAGCAGATGCTATGCCTCTG  149
      |||||| | |||||||||||||||||| ||||| ||||||||||||||||
seq2  TATTAAAGAAGCTAGTTGACTGGACGATTCTAGAAGATGCTATGCCTCTG  138

seq1  TAAAGAAACAGTGTTTTGACTTTAGGGGGCAAATTAGGGTCCCCTCATAA  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGAAACAGTGTTTTGACTTTAGGGGGCAAAATAGGGTCCCCTCATAA  188

seq1  AACAGAGGATGAACTTGTAATAGATAAACATGAAAAGATAAATAAAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGATGAACTTGTAATAGATAAACATGAAAAGATAAATAAAGGGA  238

seq1  ATACTAGTTATACACACACACACACACACACACACACACACAGATAGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTTATACACACACACACACACACACACACACACACAGATAGATA  288

seq1  TAGGTATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGACATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGACATA  338

seq1  GACATAGACATAGACATAGACATAGACATAGACATAGACATAGACATAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGACATAGACATAGACATAGACATAGACATAGACATAGACATAGA  388

seq1  CATAGACATAGACATAGATATGAGTCATCATATAAGATGACTCTCAGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATAGACATAGATATGAGTCATCATATAAGATGACTCTCAGAAC  438

seq1  TTGAAAATGGAAGTTTGTGAGGAAAGTCCCTGGGCAAGAGTTGAGACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGGAAGTTTGTGAGGAAAGTCCCTGGGCAAGAGTTGAGACATT  488

seq1  TGGCAGGAGAGTGTGCTGTTTTGAGCAGAAGAAATAAGCCAAATCTAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGAGTGTGCTGTTTTGAGCAGAAGAAATAAGCCAAATCTAGAA  538

seq1  CTTTACTTCCTTCTCATCTGCATCCAAAGTAACTCAAAAGGCAGGTGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCCTTCTCATCTGCATCCAAAGTAACTCAAAAGGCAGGTGACC  588

seq1  TTTCATTTACTGCATTAATATTGATGGTGTACAGCACAAAGAATGCTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTACTGCATTAATATTGATGGTGTACAGCACAAAGAATGCTGCA  638

seq1  GAAGTAGAAAGATCACATTCAGAGAGACAAATGAAAACGCAGCCTACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAAGATCACATTCAGAGAGACAAATGAAAACGCAGCCTACAGA  688

seq1  GGAGCTGTGACCATGAGACAGTTTGAGAAAGATTAATATTTTTCCTACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGACCATGAGACAGTTTGAGAAAGATTAATATTTTTCCTACCA  738

seq1  TAAAAATTATGGTTTTTTTCTAGTGGAAATTTCTCATCAGTATATTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATGGTTTTTTTCTAGTGGAAATTTCTCATCAGTATATTTGAA  788

seq1  AGGTTATAATTTCTGAAAAATCTAGTGAAATTTGTCTTGTGAACTACGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAATTTCTGAAAAATCTAGTGAAATTTGTCTTGTGAACTACGGG  838

seq1  GCTATCTCTTAGATATTACTGAAAGTTAAATGCATTTTAAATAGTTGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCTTAGATATTACTGAAAGTTAAATGCATTTTAAATAGTTGAAT  888

seq1  GACACAGGGAGCCAAATATTTTTTTACTGTTTTTTTTTTTTTTAAATAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGAGCCAAATATTTTTTTACTGTTTTTTTTTTTTTTAAATAGA  938

seq1  CCTTCTGCCTGTTACCCATTATGACTCCTCATGAATTC  987
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCTGTTACCCATTATGACTCCTCATGAATTC  976

seq1: chr18_27375548_27376034
seq2: B6Ng01-098D04.g_68_554

seq1  GAATTCTCTCTACCTCCCAGATGCCCCACCTTCTATATTCTGCCTAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACCTCCCAGATGCCCCACCTTCTATATTCTGCCTAAGCC  50

seq1  ATAGGTCCTTAGATTTATTATTGACAGCTGAAACATCCATAAAGACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCTTAGATTTATTATTGACAGCTGAAACATCCATAAAGACATAA  100

seq1  GATATTTTCTCCACATATCCCTTCCCACTCTTCTTCAAATTGATGCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTCCACATATCCCTTCCCACTCTTCTTCAAATTGATGCCCAT  150

seq1  TTTCCTCATCATCAATTGATATTCTATAGCTATATGCATTTGTATATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATCATCAATTGATATTCTATAGCTATATGCATTTGTATATACA  200

seq1  TATATATTCATACATATAACCTGAGTCTATGTAACAGTCCTGGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCATACATATAACCTGAGTCTATGTAACAGTCCTGGAAAATAA  250

seq1  TTTGTGTGTTCTTCCCTACAGATTACCATCACCTCAATTTCCAGCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTTCTTCCCTACAGATTACCATCACCTCAATTTCCAGCTTTAC  300

seq1  ACAGGTGCCTGTAGACCTTTGCATAGAATTGAGACCCCGTAGGCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCCTGTAGACCTTTGCATAGAATTGAGACCCCGTAGGCTTTTCT  350

seq1  CTATCCTGTTTTGGTATGTCTATTGCTGCCATCGTTGTTCATCTAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTTTTGGTATGTCTATTGCTGCCATCGTTGTTCATCTAGTACT  400

seq1  TTGGCAGTCATGTTGGTTAGATTTTATGGATATATCTTCTGATGTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTCATGTTGGTTAGATTTTATGGATATATCTTCTGATGTTACAA  450

seq1  GAGTTCTATATATATTATATGTGTGTGTGGGGGGGGG  487
      |||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTATATATATTATATGTGTGTGTGGGGGGGGG  487