BAC Information

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BAC

Clone NameB6Ng01-098N09
Chromosome18 (Build37)
Map Location 37,136,168 - 37,136,739
singlet/doubletsinglet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7
Upstream genePsd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098N09.g
ACCDH908804
length566
definitionDH908804|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agagaagaaaagacttcagcgtatgaactgggaataactttcactgtaca
ctagagtcaattgttctgcgttttgaatgtaaatattatccctatataaa
caaggagccaaacaaaagaactacttaagtcctgataggactatattttt
aaataatactaattattacaaacatagtaagtacaatcctacaaatgagg
tttaaaaaaaaagaaagtgctacacaaatatggttggagaatataaattc
tggcaataagaaactgagataattcaacttgtaaagaaatcaaaccaata
atgttgaaacccatgttgtggtagaatgtgcacaatacaaagaaggagta
ctaggtgcgcatatatatttaaatttactgtaagatttattagggatttt
taaaaggtttactgccagatttataaaggcggataagcattggaactcgt
tagaagtgcttgcctagcatgctatgggaaccagcgtctatttaagaagt
gtaggcattgaataacacactagatatgcaaacacctaattttgggaatc
caatcggtaaagaatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37136168_37136739
seq2: B6Ng01-098N09.g_70_641 (reverse)

seq1  CATTCTTTACCGATTGGATTCCCAAAATTAGGTGTTTGCATATCTAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTACCGATTGGATTCCCAAAATTAGGTGTTTGCATATCTAGTGT  50

seq1  GTTATTCAATGCCTACACTTCTTAAATAGACGCTGGTTCCCATAGCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAATGCCTACACTTCTTAAATAGACGCTGGTTCCCATAGCATGC  100

seq1  TAGGCAAGCACTTCTAACGAGTTCCAATGCTTATCCGCCTTTATAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGCACTTCTAACGAGTTCCAATGCTTATCCGCCTTTATAAATCT  150

seq1  GGCAGTAAACCTTTTAAAAATCCCTTATAAATCTTACAGTAAATTTAAAT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCAGTAAACCTTTTAAAAATCCCTAATAAATCTTACAGTAAATTTAAAT  200

seq1  ATATATGCGCACCTAGTACTCCTTCTTTGTATTGTGCACATTCTACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCGCACCTAGTACTCCTTCTTTGTATTGTGCACATTCTACCACA  250

seq1  ACATGGGTTTCAACATTATTGGTTTGATTTCTTTACAAGTTGAATTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTTTCAACATTATTGGTTTGATTTCTTTACAAGTTGAATTATCT  300

seq1  CAGTTTCTTATTGCCAGAATTTATATTCTCCAACCATATTTGTGTAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTATTGCCAGAATTTATATTCTCCAACCATATTTGTGTAGCAC  350

seq1  TTTCTTTTTTTTTAAACCTCATTTGTAGGATTGTACTTACTATGTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTAAACCTCATTTGTAGGATTGTACTTACTATGTTTGTA  400

seq1  ATAATTAGTATTATTTAAAAATATAGTCCTATCAGGACTTAAGTAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTATTATTTAAAAATATAGTCCTATCAGGACTTAAGTAGTTCT  450

seq1  TTTGTTTGGCTCCTTGTTTATATAGGGATAATATTTACATTCAAAACGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGCTCCTTGTTTATATAGGGATAATATTTACATTCAAAACGCA  500

seq1  GAACAATTGACTCTAGTGTACAGTGAAAGTTATTCCCAGTTCATACGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTGACTCTAGTGTACAGTGAAAGTTATTCCCAGTTCATACGCTG  550

seq1  AAGTGTTTACTTCTCTGAATTC  572
      |||| ||| |||||||||||||
seq2  AAGTCTTTTCTTCTCTGAATTC  572