BAC Information

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BAC

Clone NameB6Ng01-100H04
Chromosome18 (Build37)
Map Location 71,906,015 - 71,907,102
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H04.bB6Ng01-100H04.g
ACCDH909944DH909945
length1,1401,068
definitionDH909944|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H04, 5' end.DH909945|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccacaatatgcccttcgatttccacacatgcactaaaacaaata
caccctcaaccccacaacacacacagctattctgggtccgtgaactgtag
aatgattatccttcatagctaacatccacttataaatgagtaatatcatg
ttaattgtccttttgactctgtataccttacccaggatgtttttttttct
agttccattcatttgcttgcaaatttcatgatgttattttttttaacatc
tgagaaatattctattgtgcaaatgtacattagaatggaggaagagaata
cttggaaagcccgttgaaattggggggaggcatcttgtgaaatgagctag
aaacatagagcaattgaaattctctggaatctatgacggggatcttactt
aaaactcctagaaatgggtaatgtgtggcctggaccacaaccatctcctt
taatcaggcaagacttccagtgaaggaattgtgataacccatccacacat
ctcaacctacaatttctcttgcttacaagatgtgcttaggtaaagatggc
acagaaattatagactggtcaaccaagattagagagaccaagcaattcaa
ctggagaccacctccatgtgagggagactaaccttgacactacctaaagg
atcaggaaccagaaacaggataaaccggaaacacaggatggaaccaaaca
ggactggcaatttaaaaaggcaatggaaagatccataatgatatttttct
gtacttttagacaagtgcctaacacaatcatcatcagagaatctatgacc
attaactgatggaaacagatggagagacccacaaccaaacgttaggcaaa
gctcaggaaaactaaagaatgatggaaggggtgatcataggaaccaaaag
atcaggacactaaagaaagactacagaactaattatcctagctcgggggg
ggggggcacagagactaaaccaatatcaggacctatatggatctgactag
gtctcagcttatatgctttggttgtttcttgtgatcttgtagactctatg
gatgggagcaggagcttcatagactcttttgctggttggggatggatcct
gttctactgagtacctactcaagcttagacaagggtgcta
gaattcacagcttcccagaaattcgtttgcaactcattctgcatccacat
tttgttttgacttctaggaaaaacatgagcctgtttatttgagtagtata
cttcaaaacatgtaagttaaaattagcattgatttacacaaaactgcctc
aactagattacttttaattagaagagtcttacaacaaacaattcttactc
tagctgcaaataagccaagtatttcctatcatgtatgggccattatcaat
gtggctttcagaacagcaaagtagggttgtatgtctatttcatgtcctct
atataatgttgtaccatggtttagctttgtaaaccctttaattgttgaat
aaatattggataaacattacaatccagatttgtgttattcacatatttta
aacttttaaaatctttggataacagtgttaaaagtcaaaattctaaatag
aaaaagaagtggtgacttatatataactctgctactagagttatatggat
ggttgcaacctgtcatgaggttgctgggaactgagcctaggttttctgca
acaatcgccaatattcttaccactaagtcaccaccactccagtcccactt
ccctcttttattcttaatgggtaaattctctgtttgtcttgcatggtatc
ttctgtacagcaaacacacttgtacccatttgtaacaagtgtgcagtttg
gttgtcatatgggtccctaagaattggagcagggctatctttgattctgt
tgcttgccattggatccccttctccaagcagggatgccttgcctggcctc
agtgggagaggatgcgtttagtcctttggtaacttgatgtgcacacttat
gtacacatggatggaggatggatgtcttccacttctttgagagaatgatg
aaggtagtatgggaaggagtatgtgacagtgaaactggatgagaggagaa
ggaactacatcagatgtaagtgattaatgatgatatagatagatgatgat
aaagtaaatatgaatatgatactgtctactatcgattatcttttgatatg
tgggggtggggggtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71906015_71907102
seq2: B6Ng01-100H04.g_68_1134

seq1  GAATTCACAGCTTCCCAGAAATTCGTTTGCAACTCATTCTGCATCCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTTCCCAGAAATTCGTTTGCAACTCATTCTGCATCCACAT  50

seq1  TTTGTTTTGACTTCTAGGAAAAACATGAGCCTGTTTATTTGAGTAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGACTTCTAGGAAAAACATGAGCCTGTTTATTTGAGTAGTATA  100

seq1  CTTCAAAACATGTAAGTTAAAATTAGCATTGATTTACACAAAACTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACATGTAAGTTAAAATTAGCATTGATTTACACAAAACTGCCTC  150

seq1  AACTAGATTACTTTTAATTAGAAGAGTCTTACAACAAACAATTCTTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATTACTTTTAATTAGAAGAGTCTTACAACAAACAATTCTTACTC  200

seq1  TAGCTGCAAATAAGCCAAGTATTTCCTATCATGTATGGGCCATTATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAAATAAGCCAAGTATTTCCTATCATGTATGGGCCATTATCAAT  250

seq1  GTGGCTTTCAGAACAGCAAAGTAGGGTTGTATGTCTATTTCATGTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCAGAACAGCAAAGTAGGGTTGTATGTCTATTTCATGTCCTCT  300

seq1  ATATAATGTTGTACCATGGTTTAGCTTTGTAAACCCTTTAATTGTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGTTGTACCATGGTTTAGCTTTGTAAACCCTTTAATTGTTGAAT  350

seq1  AAATATTGGATAAACATTACAATCCAGATTTGTGTTATTCACATATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGATAAACATTACAATCCAGATTTGTGTTATTCACATATTTTA  400

seq1  AACTTTTAAAATCTTTGGATAACAGTGTTAAAAGTCAAAATTCTAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAAATCTTTGGATAACAGTGTTAAAAGTCAAAATTCTAAATAG  450

seq1  AAAAAGAAGTGGTGACTTATATATAACTCTGCTACTAGAGTTATATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGTGGTGACTTATATATAACTCTGCTACTAGAGTTATATGGAT  500

seq1  GGTTGCAACCTGTCATGAGGTTGCTGGGAACTGAGCCTAGGTTTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAACCTGTCATGAGGTTGCTGGGAACTGAGCCTAGGTTTTCTGCA  550

seq1  ACAATCGCCAATATTCTTACCACTAAGTCACCACCACTCCAGTCCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCGCCAATATTCTTACCACTAAGTCACCACCACTCCAGTCCCACTT  600

seq1  CCCTCTTTTATTCTTAATGGGTAAATTCTCTGTTTGTCTTGCATGGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTATTCTTAATGGGTAAATTCTCTGTTTGTCTTGCATGGTATC  650

seq1  TTCTGTACAGCAAACACACTTGTACCCATTTGTAACAAGTGTGCAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACAGCAAACACACTTGTACCCATTTGTAACAAGTGTGCAGTTTG  700

seq1  GTTGTCATATGGGTCCCTAAGAATTGGAGCAGGGCTATCTTTGATTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATATGGGTCCCTAAGAATTGGAGCAGGGCTATCTTTGATTCTGT  750

seq1  TGCTTGCCATTGGATCCCCTTCTCCAAGCAGGGATGCCTTGCCTGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCATTGGATCCCCTTCTCCAAGCAGGGATGCCTTGCCTGGCCTC  800

seq1  AGTGGGAGAGGATGCGTTTAGTCCTTTGGTAACTTGATGTGCACACTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGAGGATGCGTTTAGTCCTTTGGTAACTTGATGTGCACACTTAT  850

seq1  GTACACATGGATGGAGGATGGATGTCTTCCACTTCTTTGAGAAGAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTACACATGGATGGAGGATGGATGTCTTCCACTTCTTTGAG-AGAATGAT  899

seq1  GAAGGTAGTAGGGGAAGGAGTATGTGACAGTGAAACTGGAAGGAGAGGAA  950
      |||||||||| |||||||||||||||||||||||||||| | ||||||| 
seq2  GAAGGTAGTATGGGAAGGAGTATGTGACAGTGAAACTGG-ATGAGAGGA-  947

seq1  GGAAGGGAACTACAATCAGAATGTAAAGTGAATAAATGATAGATAAATAG  1000
       ||| |||||||| ||||| |||| ||||| || |||||| |||      
seq2  -GAA-GGAACTAC-ATCAG-ATGT-AAGTG-ATTAATGAT-GAT------  984

seq1  AATAGATAGATGAT-AAAAAGTAAAATAATGAATAAATGAATACTGTCTA  1049
       ||||||||||||| | ||||||||   ||||||  ||| ||||||||||
seq2  -ATAGATAGATGATGATAAAGTAAA--TATGAAT--ATG-ATACTGTCTA  1028

seq1  CTATCAGATTAATCTTTGTATATGTGGGG--TGGGGGTGGG  1088
      ||||| |||| ||||||  ||||||||||   |||||||||
seq2  CTATC-GATT-ATCTTTTGATATGTGGGGGTGGGGGGTGGG  1067