BAC Information

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BAC

Clone NameB6Ng01-101L20
Chromosome18 (Build37)
Map Location 44,626,560 - 44,803,758
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101L20.bB6Ng01-101L20.g
ACCDH910829DH910830
length1,104152
definitionDH910829|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L20, 5' end.DH910830|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,802,614 - 44,803,758)(44,626,560 - 44,626,711)
sequence
gaattcctttcaaatggtgaaggagtgttgcaggtgttgaggaagcagct
ggggcagagtgcagagatcatcagggacaggcagcaaaggcagagtcagc
ctgggctgctggaccagctcccatcctggttacccctagggatcagagtg
actgaggctgctgtggctatgaggttctgattcgtgcgatatgaggcaga
ggctgggagtgagcttaaaccacaaagagaaactaattttagaaagatgt
tttaaaaaggtatttccttcgaatatctaataatatggctctccttgcag
acaactgtctccaggtgactcatgctactctgcttctgtggatttttctg
tggaccaatctaactgtgtgtttttacacgcgcatacatgtgtgctgact
tgctcacatgtgtgtgtgtgagagtgcgcttgataggaatttgtacgtgc
taaggttgctagaaatgaaaatagtctaaagatccactgtgcctcagtgt
gattatttcaacccagtgaaacaatggaaccaagagagtgggatttcccc
aagaatcctgctgtgacaaggtaaagataaccagcaagactgggaacttg
tttcccagagagcaagagagatttcacacaattctaacaacttgtcaggt
catcttacaggaagggactgaagcccagacactggtgggtcaatagtggg
tgggactacaccttcaccaggacagctatttaaactttgatctcagttca
ggacctcaaagaagactgcggaaagaggagtattcaatggatctctttgt
ctctcttcccagtgtggccacattgaaaaaaaaaaaaaaaaaacaaaccc
tcctttcctgctttttaaattggctttttatggcttattgaggaagtgtg
ctggatctggcttggggcatagttgtgacccctcacctctgcaacagtac
cgtgagttctaaccccaccctgcgaacagcctagatcctgagcacgaggg
cttccatcaagggcagctgagtgaggcagctcactgcttagtgctgactt
ccgtatagcaggaagatattctcttaagtcttaattaatcggtttgctga
gtac
catgccttttttgtatgtggactttggattttattttgttttgtttatgc
attgttttgtcttattggtcttttgcttatttgttttagcttcctttttg
tgggtttttcttttgtcttcgtttttaagattgggggtggggtggggaga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44802614_44803758
seq2: B6Ng01-101L20.b_49_1152 (reverse)

seq1  GTACTCAGCAAACAGTTTAATTTAGGGACTTCTAAGTGATAATCTTCCTG  50
      ||||||||||||| | |||||| |  ||||  |||| ||  |||||||||
seq2  GTACTCAGCAAACCGATTAATTAA--GACT--TAAGAGAATATCTTCCTG  46

seq1  CTATATACAGGAAGTCAGCACTAAAGCAGATAGAGCTGGCATACACCTCA  100
      |||||    ||||||||||||| ||||||   |||||| |  |   ||||
seq2  CTATA---CGGAAGTCAGCACT-AAGCAG--TGAGCTGCCTCA---CTCA  87

seq1  GCTGCCCCTTTGATTGGGAAAGGCCCCTCTGTGCTCCAGGGATCTTAGGC  150
      |||||||  |||||  ||||    ||||| ||||||   ||||| |||||
seq2  GCTGCCC--TTGAT--GGAA---GCCCTC-GTGCTC--AGGATC-TAGGC  126

seq1  TGTTCCGCAGGGGTGGGGTTAGAACTCAACGGTACTGTTGCAGACGTTGG  200
      |||| |||| ||||||||||||||||| |||||||||||||||| ||  |
seq2  TGTT-CGCA-GGGTGGGGTTAGAACTC-ACGGTACTGTTGCAGAGGT--G  171

seq1  GGGGGTCACAACCTATGCCCCAAGCCAGATCCAGCCACACTTCCTCAATA  250
       |||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AGGGGTCACAA-CTATGCCCCAAGCCAGATCCAG-CACACTTCCTCAATA  219

seq1  AGCCAATAAAAAGGCCAAATTTAAAAAGCAGGAAAAGGAGGGTTTGTTTT  300
      |||| ||||||||  | ||||||||||||||| |||||||||||||    
seq2  AGCC-ATAAAAAG--CCAATTTAAAAAGCAGG-AAAGGAGGGTTTG----  261

seq1  TTTTTTTTTTTTTTTTTTTTCAATGTGGCCACACTGGGAAGAGAGACAAA  350
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TTTTTTTTTTTTTTTTTTCAATGTGGCCACACTGGGAAGAGAGACAAA  309

seq1  GAGATCCATTGAATACTCCTCTTTCCGCAGTCTTCTTTGAGGTCCTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCATTGAATACTCCTCTTTCCGCAGTCTTCTTTGAGGTCCTGAAC  359

seq1  TGAGATCAAAGTTTAAATAGCTGTCCTGGTGAAGGTGTAGTCCCACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAAAGTTTAAATAGCTGTCCTGGTGAAGGTGTAGTCCCACCCAC  409

seq1  TATTGACCCACCAGTGTCTGGGCTTCAGTCCCTTCCTGTAAGATGACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACCCACCAGTGTCTGGGCTTCAGTCCCTTCCTGTAAGATGACCTG  459

seq1  ACAAGTTGTTAGAATTGTGTGAAATCTCTCTTGCTCTCTGGGAAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTTAGAATTGTGTGAAATCTCTCTTGCTCTCTGGGAAACAAGT  509

seq1  TCCCAGTCTTGCTGGTTATCTTTACCTTGTCACAGCAGGATTCTTGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCTTGCTGGTTATCTTTACCTTGTCACAGCAGGATTCTTGGGGA  559

seq1  AATCCCACTCTCTTGGTTCCATTGTTTCACTGGGTTGAAATAATCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACTCTCTTGGTTCCATTGTTTCACTGGGTTGAAATAATCACACT  609

seq1  GAGGCACAGTGGATCTTTAGACTATTTTCATTTCTAGCAACCTTAGCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGTGGATCTTTAGACTATTTTCATTTCTAGCAACCTTAGCACG  659

seq1  TACAAATTCCTATCAAGCGCACTCTCACACACACACATGTGAGCAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCCTATCAAGCGCACTCTCACACACACACATGTGAGCAAGTCA  709

seq1  GCACACATGTATGCGCGTGTAAAAACACACAGTTAGATTGGTCCACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGTATGCGCGTGTAAAAACACACAGTTAGATTGGTCCACAGAA  759

seq1  AAATCCACAGAAGCAGAGTAGCATGAGTCACCTGGAGACAGTTGTCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACAGAAGCAGAGTAGCATGAGTCACCTGGAGACAGTTGTCTGCA  809

seq1  AGGAGAGCCATATTATTAGATATTCGAAGGAAATACCTTTTTAAAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCCATATTATTAGATATTCGAAGGAAATACCTTTTTAAAACATC  859

seq1  TTTCTAAAATTAGTTTCTCTTTGTGGTTTAAGCTCACTCCCAGCCTCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAATTAGTTTCTCTTTGTGGTTTAAGCTCACTCCCAGCCTCTGC  909

seq1  CTCATATCGCACGAATCAGAACCTCATAGCCACAGCAGCCTCAGTCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCGCACGAATCAGAACCTCATAGCCACAGCAGCCTCAGTCACTC  959

seq1  TGATCCCTAGGGGTAACCAGGATGGGAGCTGGTCCAGCAGCCCAGGCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTAGGGGTAACCAGGATGGGAGCTGGTCCAGCAGCCCAGGCTGA  1009

seq1  CTCTGCCTTTGCTGCCTGTCCCTGATGATCTCTGCACTCTGCCCCAGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTTGCTGCCTGTCCCTGATGATCTCTGCACTCTGCCCCAGCTG  1059

seq1  CTTCCTCAACACCTGCAACACTCCTTCACCATTTGAAAGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAACACCTGCAACACTCCTTCACCATTTGAAAGGAATTC  1104

seq1: chr18_44626560_44626711
seq2: B6Ng01-101L20.g_75_226

seq1  CATGCCTTTTTTGTATGTGGACTTTGGATTTTATTTTGTTTTGTTTATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTTTTGTATGTGGACTTTGGATTTTATTTTGTTTTGTTTATGC  50

seq1  ATTGTTTTGTCTTATTGGTCTTTTGCTTATTTGTTTTAGCTTCCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGTCTTATTGGTCTTTTGCTTATTTGTTTTAGCTTCCTTTTTG  100

seq1  TGGGTTTTTCTTTTGTCTTCGTTTTTAAGATTGGGGGTGGGGTGGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTCTTTTGTCTTCGTTTTTAAGATTGGGGGTGGGGTGGGGAGA  150

seq1  GA  152
      ||
seq2  GA  152