BAC Information

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BAC

Clone NameB6Ng01-101O03
Chromosome18 (Build37)
Map Location 62,274,420 - 62,309,081
singlet/doubletdoublet
Overlap genenone
Upstream geneCsf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O03.bB6Ng01-101O03.g
ACCDH910934DH910935
length1,1361,104
definitionDH910934|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O03, 5' end.DH910935|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,307,940 - 62,309,081)(62,274,420 - 62,275,540)
sequence
gaattcagcaaggagaatggatcagcctgtcccacttccaaaatcagagc
tctttcctctaaaatatccaaagctgggccatgagacagactgagttata
ttgattcctttctcattgctgtaataacaatacctgacaaaaggcaactt
cagggaggtagggtttatttgggtgtacagtttgaggggacatagcctgt
cacagcaggcaaaggcgtggctgcaagtgtacagggtagctgatctcatt
gcactggtccagaagtagaacacagacagaaagtgaggctggactatatc
ccatcaaaacccaccccagtgacccacagcccccagcaaggctctagctc
ctaggatcccagaatagcatcaccaactggggtcccgaatgttccaacac
atgggcctatgggggccatttcataatcaaaggactgcataaaggaaaca
atacattctgaatatactcttttatcgatggcatttgcagagcgcaaaca
tacctattgctacaattctattgtgatctttgaagagcagtagatacaac
tttaaatctcaactttgtgtaaccttggctatgtctcaaacctctgaggg
cctcatattcctcacagctaagccagaatgagtgccttctttaaagggaa
gccatgaggactcagagatgtgctatgcataaatatgtaaagtacttggc
aaccagttctacttaagaaatgtttgtgctctctcttcctcccccacacc
ccacatatttttaaacctagaaaagactccataatgtcccatttagatgc
cttgttaaggaatcagagtcccaaaagaggtcaatagctgtgctcaacaa
accacaggcagctcgctggcagaaaagacgccatgcccaaaaagtttgtc
ctctctgcagacgaacttagaggccaacctggtgcaagctctaccatcgg
agtgatgggtttgtgaggttagtcactgtggtgacagaaaggcccgaaga
tgtcttcctgcaggaacgtaaggtttgggtctgagcctgccctgcagagt
tctggctcttttacctttctgcgtgatgacggaaaacattaaagccaaga
atcgacccgcactttgcaccctcgctcccttcacac
gaattctctgcccgtttttacatctgggctactctatggctagtgctgca
gacatggcctttgcctcatggctcctgtcaaagttctgacatatgaacat
caatgcaaaaatgctcaataaaattcccgctaactgaacccaagaacaca
tcaaaacaatcatccatcctgaccaagaaggtttcattccagggatacag
atcactcacagatgaagaactaaccaagtaccactttctccatttctaga
accacacatgatgtaaggcctgcctacattctccaactgactctaggaaa
tgtgtcctcatctttgctcccaccagctccacggaacttcaaggctactt
ccttggagacgccattttggttgttcatgagcaatcaggtgtccttatta
ctttctcagaaaacatttctggcttccctcttaataccctccacatcctt
taaaactacatttgcttcccccaaacacttccttctctttttcttttcac
tagaaatcaaactacaaaggcctgtctgtcttgtcagtatgtatccaggg
cccagcacaacatctgtttgtaggaggtactggaggaacgtgttgataaa
atgatgggtacccaagtctttcatctgtacaacttacctggagaccagtg
accttctcccacgattgccagatattttattttagtcacagagtttagca
tctagctgtctaatcccgtcctttacagaagttttttgttttgtttttgt
ttgttttgtttttttttgtttgataaggatgagcaaagtgctgagaatga
ctccagctgcttggcctaagccccatctccatcccaaggcacggggagta
ctgaagaagagaacgtgaaaaggatgtaagagttagcacacgggagtaat
gctaggaaccatgagatgtcttccgacacattatggctgttgcatgcatg
aagtcacagtgaccgtggttatctagcacacagacagaacagatcagcca
gttaacattctagcccaggtagggtgagattctgaccccactcttcgctt
ggagtacagcagctgatgacttctgagagggaaagtcacttatttggtgt
acgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62307940_62309081
seq2: B6Ng01-101O03.b_51_1186 (reverse)

seq1  GTGTGAAGGGAAGACGAGGGTGCAGAGCTGCGGTCCGATTCATAGCTTTA  50
      |||||||||||   |||||||||| || |||||  |||||| | ||||||
seq2  GTGTGAAGGGA--GCGAGGGTGCAAAG-TGCGGGTCGATTCTTGGCTTTA  47

seq1  AATGTTTCCGTCATCCACGGCAGAAAGGTAAAAAGAGCCAGAAACTCTGC  100
      |   |||||||||| ||| |||||||||| ||||||||||| ||||||||
seq2  ATGTTTTCCGTCAT-CAC-GCAGAAAGGT-AAAAGAGCCAG-AACTCTGC  93

seq1  AGGGCAGGCTCAGACCCAAACCTTACGTTCCTGCAGGAAGACATCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AGGGCAGGCTCAGACCCAAACCTTACGTTCCTGCAGGAAGACATCTTCGG  143

seq1  GCCTTTCTGTCA-CACAGTGACTAAACCTCAACAAACCATCACTCCGATG  199
      |||||||||||| |||||||||| |||||||  || ||||||||||||||
seq2  GCCTTTCTGTCACCACAGTGACT-AACCTCACAAACCCATCACTCCGATG  192

seq1  GTAGAGCTTGCA-CAGGTTGGCCTCTAGGTTCGTCTGCAGAGAGGACAAA  248
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GTAGAGCTTGCACCAGGTTGGCCTCTAAGTTCGTCTGCAGAGAGGACAAA  242

seq1  CTTTTTGGGCATGGCGTCTTTTCTGCCAGCGAGCTGCCTGTGGTTTGTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGGCATGGCGTCTTTTCTGCCAGCGAGCTGCCTGTGGTTTGTTG  292

seq1  AGCACAGCTATTGACCTCTTTTGGGACTCTGATTCCTTAACAAGGCATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTATTGACCTCTTTTGGGACTCTGATTCCTTAACAAGGCATCT  342

seq1  AAATGGGACATTATGGAGTCTTTTCTAGGTTTAAAAATATGTGGGGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACATTATGGAGTCTTTTCTAGGTTTAAAAATATGTGGGGTGTG  392

seq1  GGGGAGGAAGAGAGAGCACAAACATTTCTTAAGTAGAACTGGTTGCCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAGAGAGAGCACAAACATTTCTTAAGTAGAACTGGTTGCCAAG  442

seq1  TACTTTACATATTTATGCATAGCACATCTCTGAGTCCTCATGGCTTCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACATATTTATGCATAGCACATCTCTGAGTCCTCATGGCTTCCCT  492

seq1  TTAAAGAAGGCACTCATTCTGGCTTAGCTGTGAGGAATATGAGGCCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGGCACTCATTCTGGCTTAGCTGTGAGGAATATGAGGCCCTCA  542

seq1  GAGGTTTGAGACATAGCCAAGGTTACACAAAGTTGAGATTTAAAGTTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGAGACATAGCCAAGGTTACACAAAGTTGAGATTTAAAGTTGTA  592

seq1  TCTACTGCTCTTCAAAGATCACAATAGAATTGTAGCAATAGGTATGTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTCTTCAAAGATCACAATAGAATTGTAGCAATAGGTATGTTTG  642

seq1  CGCTCTGCAAATGCCATCGATAAAAGAGTATATTCAGAATGTATTGTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGCAAATGCCATCGATAAAAGAGTATATTCAGAATGTATTGTTTC  692

seq1  CTTTATGCAGTCCTTTGATTATGAAATGGCCCCCATAGGCCCATGTGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCAGTCCTTTGATTATGAAATGGCCCCCATAGGCCCATGTGTTG  742

seq1  GAACATTCGGGACCCCAGTTGGTGATGCTATTCTGGGATCCTAGGAGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCGGGACCCCAGTTGGTGATGCTATTCTGGGATCCTAGGAGCTA  792

seq1  GAGCCTTGCTGGGGGCTGTGGGTCACTGGGGTGGGTTTTGATGGGATATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGCTGGGGGCTGTGGGTCACTGGGGTGGGTTTTGATGGGATATA  842

seq1  GTCCAGCCTCACTTTCTGTCTGTGTTCTACTTCTGGACCAGTGCAATGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCTCACTTTCTGTCTGTGTTCTACTTCTGGACCAGTGCAATGAG  892

seq1  ATCAGCTACCCTGTACACTTGCAGCCACGCCTTTGCCTGCTGTGACAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTACCCTGTACACTTGCAGCCACGCCTTTGCCTGCTGTGACAGGC  942

seq1  TATGTCCCCTCAAACTGTACACCCAAATAAACCCTACCTCCCTGAAGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCCCTCAAACTGTACACCCAAATAAACCCTACCTCCCTGAAGTTG  992

seq1  CCTTTTGTCAGGTATTGTTATTACAGCAATGAGAAAGGAATCAATATAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCAGGTATTGTTATTACAGCAATGAGAAAGGAATCAATATAAC  1042

seq1  TCAGTCTGTCTCATGGCCCAGCTTTGGATATTTTAGAGGAAAGAGCTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTCTCATGGCCCAGCTTTGGATATTTTAGAGGAAAGAGCTCTG  1092

seq1  ATTTTGGAAGTGGGACAGGCTGATCCATTCTCCTTGCTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAAGTGGGACAGGCTGATCCATTCTCCTTGCTGAATTC  1136

seq1: chr18_62274420_62275540
seq2: B6Ng01-101O03.g_69_1172

seq1  GAATTCTCTGCCCGTTTTTACATCTGGGCTACTCTATGGCTAGTGCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCGTTTTTACATCTGGGCTACTCTATGGCTAGTGCTGCA  50

seq1  GACATGGCCTTTGCCTCATGGCTCCTGTCAAAGTTCTGACATATGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCCTTTGCCTCATGGCTCCTGTCAAAGTTCTGACATATGAACAT  100

seq1  CAATGCAAAAATGCTCAATAAAATTCCCGCTAACTGAACCCAAGAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAAATGCTCAATAAAATTCCCGCTAACTGAACCCAAGAACACA  150

seq1  TCAAAACAATCATCCATCCTGACCAAGAAGGTTTCATTCCAGGGATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAATCATCCATCCTGACCAAGAAGGTTTCATTCCAGGGATACAG  200

seq1  ATCACTCACAGATGAAGAACTAACCAAGTACCACTTTCTCCATTTCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCACAGATGAAGAACTAACCAAGTACCACTTTCTCCATTTCTAGA  250

seq1  ACCACACATGATGTAAGGCCTGCCTACATTCTCCAACTGACTCTAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACATGATGTAAGGCCTGCCTACATTCTCCAACTGACTCTAGGAAA  300

seq1  TGTGTCCTCATCTTTGCTCCCACCAGCTCCACGGAACTTCAAGGCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCATCTTTGCTCCCACCAGCTCCACGGAACTTCAAGGCTACTT  350

seq1  CCTTGGAGACGCCATTTTGGTTGTTCATGAGCAATCAGGTGTCCTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGACGCCATTTTGGTTGTTCATGAGCAATCAGGTGTCCTTATTA  400

seq1  CTTTCTCAGAAAACATTTCTGGCTTCCCTCTTAATACCCTCCACATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGAAAACATTTCTGGCTTCCCTCTTAATACCCTCCACATCCTT  450

seq1  TAAAACTACATTTGCTTCCCCCAAACACTTCCTTCTCTTTTTCTTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACATTTGCTTCCCCCAAACACTTCCTTCTCTTTTTCTTTTCAC  500

seq1  TAGAAATCAAACTACAAAGGCCTGTCTGTCTTGTCAGTATGTATCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCAAACTACAAAGGCCTGTCTGTCTTGTCAGTATGTATCCAGGG  550

seq1  CCCAGCACAACATCTGTTTGTAGGAGGTACTGGAGGAACGTGTTGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACAACATCTGTTTGTAGGAGGTACTGGAGGAACGTGTTGATAAA  600

seq1  ATGATGGGTACCCAAGTCTTTCATCTGTACAACTTACCTGGAGACCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGTACCCAAGTCTTTCATCTGTACAACTTACCTGGAGACCAGTG  650

seq1  ACCTTCTCCCACGATTGCCAGATATTTTATTTTAGTCACAGAGTTTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCCACGATTGCCAGATATTTTATTTTAGTCACAGAGTTTAGCA  700

seq1  TCTAGCTGTCTAATCCCGTCCTTTACAGAAGTTTTTTGTTTTGTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTCTAATCCCGTCCTTTACAGAAGTTTTTTGTTTTGTTTTTGT  750

seq1  TTGTTTTGTTTTTTTTTGTTTGATAAGGATGAGCAAAGTGCTGAGAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTTTTGTTTGATAAGGATGAGCAAAGTGCTGAGAATGA  800

seq1  CTCCAGCTGCTTGGCCTAAGCCCCATCTCCATCCCAAGGCACGGGGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGCTTGGCCTAAGCCCCATCTCCATCCCAAGGCACGGGGAGTA  850

seq1  CTGAAGAAGAGAAGGTGAAAAGGATGTAAGAGTTAGCACACGGGGAGTAA  900
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CTGAAGAAGAGAACGTGAAAAGGATGTAAGAGTTAGCACAC-GGGAGTAA  899

seq1  TGCTAGGAACCATGAGATGTCTTCCGGACACATTATGGCTGTTGCATGCA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCTAGGAACCATGAGATGTCTTCC-GACACATTATGGCTGTTGCATGCA  948

seq1  TGAAGTCACAGTGACCGTGGTTATCTAGCACACAAGACCAGAACAAGATC  1000
      ||||||||||||||||||||||||||||||||| ||| |||||| |||||
seq2  TGAAGTCACAGTGACCGTGGTTATCTAGCACAC-AGA-CAGAAC-AGATC  995

seq1  AAGCCAGTTAACATTCTAGCCCAGGTAGGGTGAGGATTCCTGACCCCACT  1050
       |||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  -AGCCAGTTAACATTCTAGCCCAGGTAGGGTGA-GATT-CTGACCCCACT  1042

seq1  CCTTCGCTGGGAGGTTACAGGCAGCTGATGACTTCTGAAGGAGGGAGAGT  1100
       ||||||| ||||  |||| ||||||||||||||||||  |||||| |||
seq2  -CTTCGCTTGGAG--TACA-GCAGCTGATGACTTCTGA--GAGGGAAAGT  1086

seq1  CACTTTTATTTGGGTGTACGG  1121
      |||  |||||| |||||||||
seq2  CAC--TTATTT-GGTGTACGG  1104