BAC Information

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BAC

Clone NameB6Ng01-102I01
Chromosome18 (Build37)
Map Location 11,769,342 - 11,849,149
singlet/doubletdoublet
Overlap geneLOC665310, LOC100040148, Rbbp8
Upstream geneMib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102I01.bB6Ng01-102I01.g
ACCDH911378DH911379
length830809
definitionDH911378|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I01, 5' end.DH911379|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,769,342 - 11,770,170)(11,848,598 - 11,849,149)
sequence
gaattcccctctggcaggcttatatattttatttctgcttggtgagtctc
ccttactttaaagtaaagtaaaaaccacagtgttaaatccagtttcactg
ctgtccagctgattggtgatcacatttgttcagaaggcaaacaggagaag
agtgacttctagtcagctaggaagaggatcttaaagcccacgcccacatt
gacacacttcctccaacaagatcacacctcctaataatgccactccttga
ggcaagcatattcagaccaccacaatggccctaataaacttggcaaggat
ctgtgagaagcttagacagaagatcctgtgagagaagaatatgggtccca
tgactgagggtcgtatgttttggtagcatagatgcccctcaggtcaccat
ggatacttgtgtaatttggtcatgagcaaaaaggtatgagatctctttgt
agcctaatacaatgatcagctgaaactgctgtgctgtcaggggcctggct
atgttcacctctgttgttccttgttagaaactacgctattatactgaata
actagtgtctaatatgaacatcaaactctagttattttttctaaaattat
caatcctaaaatataaagtgaaatcaactttaaattgccaattcctataa
aatagttttaaaacaaagaaatgcttttattcattttatttattattatt
gtggttgttattggaggtggatggggtgagcatgtcatgattttgcatgt
agaggtcagatgacaattctgtgtaataggcactcttccatctaccttta
ttgggttttttttttttttttttttaaaga
gaattctatcccaggtggttcctgttagaccttctgtgtttgcattcctc
tgttttatgtaagaatccagtaacctctttgtaccttgctggtgtgtcac
ccaacttccttattttcttctgtataaaaagtttgatgctcgatttgaca
aattacattcagattctacacaacctctcctgtgtgcatctgtctgtcat
ctcatccaacgctttgcccacctgcgactagagacccgttccacgcagac
aaaggggcccagagggtctgcggcatgagtaggtgggtatatatttatat
gtggtatgtgtgcatgtgcatgtgggtgcatatgcgcatgcaggtaggtg
atatggaagcctaagattgacaatggagccctccttaattgctctccatc
ttacatatttgagatagagtttctcattgaacctggagctcacttttggc
taatctggctagctagcttgctctgggattatgggaaggccactatatat
atgaattctggggacccaaattccagcccaaatgctttactcactggaac
atcttatgaaccccaagagacttttcttaagaaagctaaccttgattttt
atctattatagtaaaaagcaagtcctacctagtactaagtggtcatgata
ttttaggcagctctacatctgtttttgctcagaataacacaagacacagc
taatgaatgtttgacaatgttttttgttctataaatatgacagatcagtg
aatacaaaggaagaaaaagttatcttatatttcttttcaccattcaagaa
accagtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_11769342_11770170
seq2: B6Ng01-102I01.b_46_875

seq1  GAATTCCCCTCTGGCAGGCTTATATATTTTATTTCTGCTTGGTGAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCTGGCAGGCTTATATATTTTATTTCTGCTTGGTGAGTCTC  50

seq1  CCTTACTTTAAAGTAAAGTAAAAACCACAGTGTTAAATCCAGTTTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTTAAAGTAAAGTAAAAACCACAGTGTTAAATCCAGTTTCACTG  100

seq1  CTGTCCAGCTGATTGGTGATCACATTTGTTCAGAAGGCAAACAGGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGCTGATTGGTGATCACATTTGTTCAGAAGGCAAACAGGAGAAG  150

seq1  AGTGACTTCTAGTCAGCTAGGAAGAGGATCTTAAAGCCCACGCCCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCTAGTCAGCTAGGAAGAGGATCTTAAAGCCCACGCCCACATT  200

seq1  GACACACTTCCTCCAACAAGATCACACCTCCTAATAATGCCACTCCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTTCCTCCAACAAGATCACACCTCCTAATAATGCCACTCCTTGA  250

seq1  GGCAAGCATATTCAGACCACCACAATGGCCCTAATAAACTTGGCAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCATATTCAGACCACCACAATGGCCCTAATAAACTTGGCAAGGAT  300

seq1  CTGTGAGAAGCTTAGACAGAAGATCCTGTGAGAGAAGAATATGGGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAAGCTTAGACAGAAGATCCTGTGAGAGAAGAATATGGGTCCCA  350

seq1  TGACTGAGGGTCGTATGTTTTGGTAGCATAGATGCCCCTCAGGTCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGGTCGTATGTTTTGGTAGCATAGATGCCCCTCAGGTCACCAT  400

seq1  GGATACTTGTGTAATTTGGTCATGAGCAAAAAGGTATGAGATCTCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTGTGTAATTTGGTCATGAGCAAAAAGGTATGAGATCTCTTTGT  450

seq1  AGCCTAATACAATGATCAGCTGAAACTGCTGTGCTGTCAGGGGCCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAATACAATGATCAGCTGAAACTGCTGTGCTGTCAGGGGCCTGGCT  500

seq1  ATGTTCACCTCTGTTGTTCCTTGTTAGAAACTACGCTATTATACTGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACCTCTGTTGTTCCTTGTTAGAAACTACGCTATTATACTGAATA  550

seq1  ACTAGTGTCTAATATGAACATCAAACTCTAGTTATTTTTTCTAAAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTCTAATATGAACATCAAACTCTAGTTATTTTTTCTAAAATTAT  600

seq1  CAATCCTAAAATATAAAGTGAAATCAACTTTAAATTGCCAATTCCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAAAATATAAAGTGAAATCAACTTTAAATTGCCAATTCCTATAA  650

seq1  AATAGTTTTAAAACAAAGAAATGCTTTTATTCATTTTATTTATTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTAAAACAAAGAAATGCTTTTATTCATTTTATTTATTATTATT  700

seq1  GTGGTTGTTATTGGAGGTGGATGGGGTGAGCATGTCATGA-TTTGCATGT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGTTGTTATTGGAGGTGGATGGGGTGAGCATGTCATGATTTTGCATGT  750

seq1  AGAGGTCAGAGGACAATTCTGTGTAATAGGCACTC-TCCATCTACCTTTA  798
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AGAGGTCAGATGACAATTCTGTGTAATAGGCACTCTTCCATCTACCTTTA  800

seq1  TTGGGTTTTTTTTTTTTTTTTTTTTTAAAGA  829
      ||||| |||||||||||||||||||||||||
seq2  TTGGG-TTTTTTTTTTTTTTTTTTTTAAAGA  830

seq1: chr18_11848598_11849149
seq2: B6Ng01-102I01.g_321_874 (reverse)

seq1  AATACTGGTTTCTTTGAATGTTG-AAAGAAATATAAGATAACTTTTTCTT  49
      |||||||||||| ||||||| || ||||||||||||||||||||||||||
seq2  AATACTGGTTTC-TTGAATGGTGAAAAGAAATATAAGATAACTTTTTCTT  49

seq1  CCTTTGTATTCACTGATCTGTCATATTTATAGAAC-AAAAACATTGTCAA  98
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTTGTATTCACTGATCTGTCATATTTATAGAACAAAAAACATTGTCAA  99

seq1  ACATTCATTAGCTGTGTCTTGTGTTATTCTGAGC-AAAACAGATGTAGAG  147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATTCATTAGCTGTGTCTTGTGTTATTCTGAGCAAAAACAGATGTAGAG  149

seq1  CTGCCTAAAATATCATGACCACTTAGTACTAGGTAGGACTTGCTTTTTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAAAATATCATGACCACTTAGTACTAGGTAGGACTTGCTTTTTAC  199

seq1  TATAATAGATAAAAATCAAGGTTAGCTTTCTTAAGAAAAGTCTCTTGGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGATAAAAATCAAGGTTAGCTTTCTTAAGAAAAGTCTCTTGGGG  249

seq1  TTCATAAGATGTTCCAGTGAGTAAAGCATTTGGGCTGGAATTTGGGTCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGATGTTCCAGTGAGTAAAGCATTTGGGCTGGAATTTGGGTCCC  299

seq1  CAGAATTCATATATATAGTGGCCTTCCCATAATCCCAGAGCAAGCTAGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCATATATATAGTGGCCTTCCCATAATCCCAGAGCAAGCTAGCT  349

seq1  AGCCAGATTAGCCAAAAGTGAGCTCCAGGTTCAATGAGAAACTCTATCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTAGCCAAAAGTGAGCTCCAGGTTCAATGAGAAACTCTATCTC  399

seq1  AAATATGTAAGATGGAGAGCAATTAAGGAGGGCTCCATTGTCAATCTTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAAGATGGAGAGCAATTAAGGAGGGCTCCATTGTCAATCTTAG  449

seq1  GCTTCCATATCACCTACCTGCATGCGCATATGCACCCACATGCACATGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATATCACCTACCTGCATGCGCATATGCACCCACATGCACATGCA  499

seq1  CACATACCACATATAAATATATACCCACCTACTCATGCCGCAGACCCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCACATATAAATATATACCCACCTACTCATGCCGCAGACCCTCT  549

seq1  GGGCC  552
      |||||
seq2  GGGCC  554