BAC Information

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BAC

Clone NameB6Ng01-102N10
Chromosome18 (Build37)
Map Location 38,253,807 - 38,428,349
singlet/doubletdoublet
Overlap genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12
Upstream genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Downstream geneRnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102N10.bB6Ng01-102N10.g
ACCDH911613DH911614
length1,0321,101
definitionDH911613|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N10, 5' end.DH911614|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,253,807 - 38,254,844)(38,427,235 - 38,428,349)
sequence
gaattcttctcaggaagttctgggttctcttgccctgtgcatcttcaagg
cttggtggggctcctgacagcttctcctcatctgggaacttgccaccatt
ctgctcagtgtctcttttatctccttcctgactcaactgtcttttctccc
tttgtccctctctttgtctatctttccacatccttgtctctgatccagct
catgactcagcccatttgggcctctaggcgtgcctctccttccctgtttc
cctgtcatgcctctgatccatcctgcatataaacccagtggcctctctta
ccagtctacgctgtgtcttgctacatccgacatggattttttttttctct
tgctctctaaaagttggatcctaagctttgaacaaaaaagaccaaagggc
aaaggccagggcctgctatccaaagagggaaggggctctcctccacccat
atctcttcttcctcaatgtggggtgcagccctggctctctgtgcttcctg
agcacgggtgtgtgtgggctgagggcagaaggcccatcttgcctgtcatc
tggagagacgtgtgtgcaaaatgttagttctgtggctctgattcagcttc
caggcggctggctgcagaacacaatgatgcaaggggatgggctgatgggg
acccagaagaaggagtgagtgggaatggagacagagtcctaggttttggc
agagaacctcagccttccaggccagaactccaggtggcctcatgaggacg
tgggtggggtcaaagcagccctggatgtgatgatatttgtcagagtcctg
ggaagaaagcatgcagagtggcagatatgtaggtgtaatgaaggggaccc
cgaaaggggccctgtggataagagatgggatagtgtgtggtgaacgtgat
gggtgaagggatgggtcagatgcagcacacgatgttgacagatgggtcag
atgcagcccacgactttgccatacatgagtgtgagaggccatgcttgact
cttagggccttccccattgcatgtccccttct
gaattcattggacagagatatccctaactttagggcaacttatgctatgc
tgttcctcacagaggaagcaggagtccaggactaccaagcaactgactag
ggcagaccttgtaatggtctgcgtggctgagctttacggacaacagggac
agcttgtttcactcctaggagtttgcagtaaaacacataaagaggtggcc
ctcaggaggaacagataccacaaagtgtagtatcctaagcagagggatgg
cctcactggacactgaaggccgagggtgggctcttggaagagccaggcaa
tgccttctgacctactaataaagggaaaactgcagctcactctgtttgga
gtgagagctgtttgtcatcaaattcctggcatgaaactcttgttgggtca
tgacaggcatgggtcacactggtttgaagtgacaggtacgcagacgatgg
acatgtgtgtccttgaccccactccactatgctatccaacaatatgcatc
tcagctagaaaaatcaggacgttaggaaagcaagactgtaaatagagtat
ttatatgagccaggcactaggctttaatttgattccccacccccacccca
gccctgcccagtgctaggtcggtagtattttcatacccattttacaggaa
tgaagcttgggaacattgagggttcttccccaagattgagcaaggagtag
aggcagactcaggatttgtgctcaggctggcccaaagccaaagcccatgt
catcaaccatggcactggattgcaaacaaaggaacggaagaggaaaagtc
cctgagatgaagacttgcagacagaagacactcagttccgattagtccgc
tcttacaagcacagggtaaaaggagctcgcatctgctcagtcccagtcct
ttcttttccagggagcagcccttcttgtgcatacagtagtcttacctgac
acccatctggggaagtcttgctctatcggcagcttggtctgtgatgaggc
tccagaggatggtgtgtgactagaactagaaatcatactgacagcagcag
cttcagggttgggggagagtgaagaaagagctaattttccagagactttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38253807_38254844
seq2: B6Ng01-102N10.b_48_1079

seq1  GAATTCTTCTCAGGAAGTTCTGGGTTCTCTTGCCCTGTGCATCTTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAGGAAGTTCTGGGTTCTCTTGCCCTGTGCATCTTCAAGG  50

seq1  CTTGGTGGGGCTCCTGACAGCTTCTCCTCATCTGGGAACTTGCCACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGGCTCCTGACAGCTTCTCCTCATCTGGGAACTTGCCACCATT  100

seq1  CTGCTCAGTGTCTCTTTTATCTCCTTCCTGACTCAACTGTCTTTTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTGTCTCTTTTATCTCCTTCCTGACTCAACTGTCTTTTCTCCC  150

seq1  TTTGTCCCTCTCTTTGTCTATCTTTCCACATCCTTGTCTCTGATCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTCTCTTTGTCTATCTTTCCACATCCTTGTCTCTGATCCAGCT  200

seq1  CATGACTCAGCCCATTTGGGCCTCTAGGCGTGCCTCTCCTTCCCTGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCAGCCCATTTGGGCCTCTAGGCGTGCCTCTCCTTCCCTGTTTC  250

seq1  CCTGTCATGCCTCTGATCCATCCTGCATATAAACCCAGTGGCCTCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGCCTCTGATCCATCCTGCATATAAACCCAGTGGCCTCTCTTA  300

seq1  CCAGTCTACGCTGTGTCTTGCTACATCCGACATGGATTTTTTTTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTACGCTGTGTCTTGCTACATCCGACATGGATTTTTTTTTTCTCT  350

seq1  TGCTCTCTAAAAGTTGGATCCTAAGCTTTGAACAAAAAAGACCAAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTAAAAGTTGGATCCTAAGCTTTGAACAAAAAAGACCAAAGGGC  400

seq1  AAAGGCCAGGGCCTGCTATCCAAAGAGGGAAGGGGCTCTCCTCCACCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGGGCCTGCTATCCAAAGAGGGAAGGGGCTCTCCTCCACCCAT  450

seq1  ATCTCTTCTTCCTCAATGTGGGGTGCAGCCCTGGCTCTCTGTGCTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTTCCTCAATGTGGGGTGCAGCCCTGGCTCTCTGTGCTTCCTG  500

seq1  AGCACGGGTGTGTGTGGGCTGAGGGCAGAAGGCCCATCTTGCCTGTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGTGTGTGTGGGCTGAGGGCAGAAGGCCCATCTTGCCTGTCATC  550

seq1  TGGAGAGACGTGTGTGCAAAATGTTAGTTCTGTGGCTCTGATTCAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGACGTGTGTGCAAAATGTTAGTTCTGTGGCTCTGATTCAGCTTC  600

seq1  CAGGCGGCTGGCTGCAGAACACAATGATGCAAGGGGATGGGCTGATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGCTGGCTGCAGAACACAATGATGCAAGGGGATGGGCTGATGGGG  650

seq1  ACCCAGAAGAAGGAGTGAGTGGGAATGGAGACAGAGTCCTAGGTTTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGAAGGAGTGAGTGGGAATGGAGACAGAGTCCTAGGTTTTGGC  700

seq1  AGAGAACCTCAGCCTTCCAGGCCAGAACTCCAGGTGGCCTCATGAGGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTCAGCCTTCCAGGCCAGAACTCCAGGTGGCCTCATGAGGACG  750

seq1  TGGGTGGGGTCAAAGCAGCCCTGGATGTGATGATATTTGTCAGGAGTCCT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGTGGGGTCAAAGCAGCCCTGGATGTGATGATATTTGTCA-GAGTCCT  799

seq1  GGGAAGAAAGCATGCAGAGTGGCAGATATGTAGGTGTAATGAAGGGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGCATGCAGAGTGGCAGATATGTAGGTGTAATGAAGGGGACC  849

seq1  CCGAAAGGGGCCCTGTGGATAAGAGATGGGATAGTGTGTGGTGAACGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGGGGCCCTGTGGATAAGAGATGGGATAGTGTGTGGTGAACGTGA  899

seq1  TGGGTGAAAGGGATGGGTCAGAAGGCAGCACACGATGTTGACAGATGGGT  950
      |||||| |||||||||||||| | ||||||||||||||||||||||||||
seq2  TGGGTG-AAGGGATGGGTCAG-ATGCAGCACACGATGTTGACAGATGGGT  947

seq1  CAGAAGGCAGCCCACGACTTTGCCATACATGAGTGTGAGAGGCCATGGCT  1000
      ||| | |||||||||||||||||||||||||||||||||||||||||  |
seq2  CAG-ATGCAGCCCACGACTTTGCCATACATGAGTGTGAGAGGCCATGCTT  996

seq1  GAGCTCTTAGGGCCTTCCCCCTTTGCATGTCCCCTTCT  1038
      || ||||||||||||| |||| ||||||||||||||||
seq2  GA-CTCTTAGGGCCTT-CCCCATTGCATGTCCCCTTCT  1032

seq1: chr18_38427235_38428349
seq2: B6Ng01-102N10.g_68_1168 (reverse)

seq1  AAAAAGTCTTGGGAAAATATTAGCTCTTTCTTCACTCT-CCCCACCCCTG  49
      |||||||||  |||||  |||||||||||||||||||| ||||| |||||
seq2  AAAAAGTCTCTGGAAA--ATTAGCTCTTTCTTCACTCTCCCCCAACCCTG  48

seq1  AAAAGCTGGCTGCTGTCAGTATGGATTTTCTAGTTCTAGTTCACACACCA  99
        ||||| |||||||||||||||   ||||||||||||| ||||||||||
seq2  --AAGCT-GCTGCTGTCAGTATG--ATTTCTAGTTCTAG-TCACACACCA  92

seq1  TCCTCTGGGGCCTCAATTCACAGACCCAAGCCTGCCGATAGAGCAAGACT  149
      |||||||| ||||||  ||||||| ||||| |||||||||||||||||||
seq2  TCCTCTGGAGCCTCA--TCACAGA-CCAAG-CTGCCGATAGAGCAAGACT  138

seq1  TCCCCAGATGGGGTGTCAGGTAAGACTACTGTATGCACAAGAAGGGCTGC  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAT-GGGTGTCAGGTAAGACTACTGTATGCACAAGAAGGGCTGC  187

seq1  TCCCTGGAAAAGGAAGGGACTGGGACTGGGCAGATGCGAGCTCCTTTTAC  249
      ||||||||||| ||| |||||||||||| |||||||||||||||||||||
seq2  TCCCTGGAAAA-GAAAGGACTGGGACTGAGCAGATGCGAGCTCCTTTTAC  236

seq1  CCTGTGCTTGTAAGAGCGGACTAATTCGGAACTGAGTGTCTTCTGTCTGC  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGTGCTTGTAAGAGCGGACTAA-TCGGAACTGAGTGTCTTCTGTCTGC  285

seq1  AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATCTCAGGGACTTTTCCTCTTCCGTTCCTTTGTTTGCAATCC  335

seq1  AGTGCCATGGTTGATGACATGGGCTTTGGCTTTGGGCCAGCCTGAGCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATGGTTGATGACATGGGCTTTGGCTTTGGGCCAGCCTGAGCACA  385

seq1  AATCCTGAGTCTGCCTCTACTCCTTGCTCAATCTTGGGGAAGAACCCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAGTCTGCCTCTACTCCTTGCTCAATCTTGGGGAAGAACCCTCA  435

seq1  ATGTTCCCAAGCTTCATTCCTGTAAAATGGGTATGAAAATACTACCGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCAAGCTTCATTCCTGTAAAATGGGTATGAAAATACTACCGACC  485

seq1  TAGCACTGGGCAGGGCTGGGGTGGGGGTGGGGAATCAAATTAAAGCCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGGCAGGGCTGGGGTGGGGGTGGGGAATCAAATTAAAGCCTAG  535

seq1  TGCCTGGCTCATATAAATACTCTATTTACAGTCTTGCTTTCCTAACGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTCATATAAATACTCTATTTACAGTCTTGCTTTCCTAACGTCC  585

seq1  TGATTTTTCTAGCTGAGATGCATATTGTTGGATAGCATAGTGGAGTGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTAGCTGAGATGCATATTGTTGGATAGCATAGTGGAGTGGGG  635

seq1  TCAAGGACACACATGTCCATCGTCTGCGTACCTGTCACTTCAAACCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACACACATGTCCATCGTCTGCGTACCTGTCACTTCAAACCAGTG  685

seq1  TGACCCATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCATGCCTGTCATGACCCAACAAGAGTTTCATGCCAGGAATTTGAT  735

seq1  GACAAACAGCTCTCACTCCAAACAGAGTGAGCTGCAGTTTTCCCTTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGCTCTCACTCCAAACAGAGTGAGCTGCAGTTTTCCCTTTATT  785

seq1  AGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACCCTCGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTCAGAAGGCATTGCCTGGCTCTTCCAAGAGCCCACCCTCGGCCT  835

seq1  TCAGTGTCCAGTGAGGCCATCCCTCTGCTTAGGATACTACACTTTGTGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCAGTGAGGCCATCCCTCTGCTTAGGATACTACACTTTGTGGT  885

seq1  ATCTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCCTCCTGAGGGCCACCTCTTTATGTGTTTTACTGCAAACTCCT  935

seq1  AGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAAGCTCAGCCACGCAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAAACAAGCTGTCCCTGTTGTCCGTAAAGCTCAGCCACGCAGAC  985

seq1  CATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAGGTCTGCCCTAGTCAGTTGCTTGGTAGTCCTGGACTCCTGCT  1035

seq1  TCCTCTGTGAGGAACAGCATAGCATAAGTTGCCCTAAAGTTAGGGATATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGAGGAACAGCATAGCATAAGTTGCCCTAAAGTTAGGGATATC  1085

seq1  TCTGTCCAATGAATTC  1115
      ||||||||||||||||
seq2  TCTGTCCAATGAATTC  1101