BAC Information

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BAC

Clone NameB6Ng01-102O01
Chromosome18 (Build37)
Map Location 52,734,862 - 52,894,336
singlet/doubletdoublet
Overlap geneZfp474, 1700034E13Rik, Gykl1
Upstream geneEG240289, Ftmt, Srfbp1, Lox
Downstream geneSncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102O01.bB6Ng01-102O01.g
ACCDH911639DH911640
length754422
definitionDH911639|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O01, 5' end.DH911640|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,734,862 - 52,735,615)(52,893,917 - 52,894,336)
sequence
gaattcattcaacacagacaaccctagactacaccattgcttcaatagtc
gaacagttaatattgttgatatttttttaaagtgagttaccagaaatttt
gttaactctgtgctggtgagcccaacattgcttctcaagtcctcatacag
aggataatgatgggtacataaaaaatgactcctgtagccagacgtggtgg
tgcacacctttaatcccagcactcgggaggcaaaggcggtagcctggtct
acaaagtgagttccaggacagccagagctatacagagaaaccctgtctcg
aaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagactcctggaggggt
aaaaacaaagagatcattagttaagatttgtgttattttcactgaaggca
ttctgttccggttagtttttatttcctctttcacgagttaaataagaaag
ataagttgccattttgaatctgtatcagtggatttaggtgatatcactaa
tttcactagatccaggcaagctaaagatggtgacatttcaatgttaaaaa
catttctaccatatgtaaaagaatggtcaaaaaagtaacatggagaacaa
ttattccttttacgattataatgtaaatgaattatttccagcttcccttt
cctccctccaaactctcccatatacctctctgtactctttcaagtttcat
taattgttgttatataatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt
gtgc
gaattccagagtccccctccttctagtgccttaaaaatctgctaattctg
gtcttcactttctaatcccaccctcttaagaggtcatcttccccttccag
aatcttctcattattgtgaaactagattctgctagtcacgaacacactac
tttgtcttattctcaccttcttttaacaattgtttttttattttttattt
ttttggttttttgagacagggtttctctgtgtagccctggatgtcgtgga
actcagtttgtagaccaggctggccttggactcagaaatccacctgcctc
tgcctcccaagtgctgggataaaaggcgtgccgccagcacccgcccagct
attcccccctttcttaagtagacttgttgggagaagcaagtttccagctg
ccctattctctagcacctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52734862_52735615
seq2: B6Ng01-102O01.b_42_795

seq1  GAATTCATTCAACACAGACAACCCTAGACTACACCATTGCTTCAATAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACACAGACAACCCTAGACTACACCATTGCTTCAATAGTC  50

seq1  GAACAGTTAATATTGTTGATATTTTTTTAAAGTGAGTTACCAGAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTAATATTGTTGATATTTTTTTAAAGTGAGTTACCAGAAATTTT  100

seq1  GTTAACTCTGTGCTGGTGAGCCCAACATTGCTTCTCAAGTCCTCATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTCTGTGCTGGTGAGCCCAACATTGCTTCTCAAGTCCTCATACAG  150

seq1  AGGATAATGATGGGTACATAAAAAATGACTCCTGTAGCCAGACGTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATGATGGGTACATAAAAAATGACTCCTGTAGCCAGACGTGGTGG  200

seq1  TGCACACCTTTAATCCCAGCACTCGGGAGGCAAAGGCGGTAGCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTTTAATCCCAGCACTCGGGAGGCAAAGGCGGTAGCCTGGTCT  250

seq1  ACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCG  300

seq1  AAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTCCTGGAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTCCTGGAGGGGT  350

seq1  AAAAACAAAGAGATCATTAGTTAAGATTTGTGTTATTTTCACTGAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAGAGATCATTAGTTAAGATTTGTGTTATTTTCACTGAAGGCA  400

seq1  TTCTGTTCCGGTTAGTTTTTATTTCCTCTTTCACGAGTTAAATAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCGGTTAGTTTTTATTTCCTCTTTCACGAGTTAAATAAGAAAG  450

seq1  ATAAGTTGCCATTTTGAATCTGTATCAGTGGATTTAGGTGATATCACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGCCATTTTGAATCTGTATCAGTGGATTTAGGTGATATCACTAA  500

seq1  TTTCACTAGATCCAGGCAAGCTAAAGATGGTGACATTTCAATGTTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTAGATCCAGGCAAGCTAAAGATGGTGACATTTCAATGTTAAAAA  550

seq1  CATTTCTACCATATGTAAAAGAATGGTCAAAAAAGTAACATGGAGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTACCATATGTAAAAGAATGGTCAAAAAAGTAACATGGAGAACAA  600

seq1  TTATTCCTTTTACGATTATAATGTAAATGAATTATTTCCAGCTTCCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTTTACGATTATAATGTAAATGAATTATTTCCAGCTTCCCTTT  650

seq1  CCTCCCTCCAAACTCTCCCATATACCTCTCTGTACTCTTTCAAGTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCAAACTCTCCCATATACCTCTCTGTACTCTTTCAAGTTTCAT  700

seq1  TAATTGTTGTTATATAATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGTTATATAATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  GTGC  754
      ||||
seq2  GTGC  754

seq1: chr18_52893917_52894336
seq2: B6Ng01-102O01.g_68_489 (reverse)

seq1  TTCTAGGTGCTAGAGAATAGGCAAGCTGGAAACTTAGCTTCTGCCAACAA  50
      |||||||||||||||||||||  |||||||||||| |||||| |||||||
seq2  TTCTAGGTGCTAGAGAATAGGGCAGCTGGAAACTT-GCTTCTCCCAACAA  49

seq1  GTCTACTTAAGAAA-GTGAGAATAGCTGGGC-GGTGCTGGC-GCACGCCT  97
      |||||||||||||| | | |||||||||||| ||||||||| ||||||||
seq2  GTCTACTTAAGAAAGGGGGGAATAGCTGGGCGGGTGCTGGCGGCACGCCT  99

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTCCAAGG  147
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTCCAAGG  149

seq1  CCAGCCTGGTCTACAAACTGAGTTCCACGACATCCAGGGCTACACAGAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAACTGAGTTCCACGACATCCAGGGCTACACAGAGA  199

seq1  AACCCTGTCTCAAAAAACCAAAAAAATAAAAAATAAAAAAACAATTGTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAAAAACCAAAAAAATAAAAAATAAAAAAACAATTGTTA  249

seq1  AAAGAAGGTGAGAATAAGACAAAGTAGTGTGTTCGTGACTAGCAGAATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGTGAGAATAAGACAAAGTAGTGTGTTCGTGACTAGCAGAATCT  299

seq1  AGTTTCACAATAATGAGAAGATTCTGGAAGGGGAAGATGACCTCTTAAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACAATAATGAGAAGATTCTGGAAGGGGAAGATGACCTCTTAAGA  349

seq1  GGGTGGGATTAGAAAGTGCACACCAGAATTAGCAGATTTTTAAGGCACTA  397
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GGGTGGGATTAGAAAGTGAAGACCAGAATTAGCAGATTTTTAAGGCACTA  399

seq1  GAAGGAGGGGGACTCTGGAATTC  420
      |||||||||||||||||||||||
seq2  GAAGGAGGGGGACTCTGGAATTC  422