BAC Information

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BAC

Clone NameB6Ng01-103C10
Chromosome18 (Build37)
Map Location 46,346,821 - 46,514,103
singlet/doubletdoublet
Overlap geneTrim36, LOC100042905, Pggt1b, Ccdc112
Upstream geneLOC100042900, Kcnn2
Downstream geneEG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103C10.bB6Ng01-103C10.g
ACCDH911833DH911834
length1,2481,161
definitionDH911833|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C10, 5' end.DH911834|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,346,821 - 46,348,098)(46,512,931 - 46,514,103)
sequence
gaattccacctgcctctgcctcctgggtgctggggttaaaagcatgcacc
accacactcagtgtatatgattttttttaaagtagaaaaatttagaattc
ccatacaaagaggttcagtgagttcggttataggtgaatattctctatca
tgagagacagctttcactgactaacataaatggcttaaaggaactatttt
tgttaatatagcctagtcatacacctttgggttactcatcaggattttat
agttgcaagtaaaagcttatggctaatttgcatgccaaagagtatggcac
acttaacttataaaaacctagccctaccgtagctcattatcatgtgtcct
tccatgatagaagagtactaatgtgatctttttaatgaatcactaaaact
tttgaagtcatacgtatttaaaactcaaagatctcaaggagttacggtga
gacacatcataatagggaattcaaagctatttgataaatctgttatcaga
ctagcagttttgacgagatggccttcccaatgtgtgtacaaggaaatatc
tttgctttaatctttcaggctacactatataagcaatgttcagtgaacac
ttttgaaatattttttaagactttaaactttaaattatttgttatgtgtc
tgtgtggggaatggaaacgtcagtgcaggactcaaaaaggacagaagaga
ggattgaacctcttggagctgcaattaaagctgcctatgaggagcctgtg
tgggtgctgggaaccaaacctgggtcctctgttaaagacagtgggcaatc
taaaccactgagccgtctctctggctccggaagagatttgcaatttacac
atgaaattattacaagttaaagcctgtcttcttaacaatagcattaaatt
ttcatattcatagcagtcactaagtcataaagaagaacaacttctgagca
ttcattgtttcaattacacaaatgagacatcttggagatatacaaattta
ttttactcatcagagatcataggacatgaagttcttatgagtatagtaca
ttacccagaatatttgagaaatgcaaatttctactacagatataaaacca
ctacgttccatgctttaagtactgggctgataactaattacccaaatcag
gctctgttcctagacctctgcgatttctcccatccaattggatcatacta
cctggactggatatgtgggtccaatactctaggctgggcttttacagt
gaattcagagagctgtggtcacatcttcaaggtgcaccgcagtcactgcg
tgtcctgctggaaagtggtggggttgcgagagctcagcaatagtgcctca
tactattactcatacgcataggtgcttgtcacgaagtcccatggtcgggc
catcacaaatcggcctcccggcgaatgtgctgctgggtcctactcttctc
tactattgccttagcgatagctaagcattcctccctagagattctgggtt
ctgttgagaagttccctattcattatgcaaatccatgagcatccctggaa
taggctcagcaacagacgctgccgtgctttaggatggtagggtagaaata
gcattggaaggctgaatgctcatctctctcataatattgagagtgttgga
gtgtagctgtgaatcaggttccaagctgttgtgccatttattgaagaaga
gaacagtagtagccttctttaactcttgtgtctctccaaggtttaatgag
tccaatttgctcctattctaagcctgggcttcaaacaagcatgtgcaatt
aacctggctctatttaaaggttggggaaattgtcagacctgattggaagg
cagcgttcagaactcaaaacagaaaacagttttgttccttcagtatctgc
ttttgagagaactggtcagagagcctgatgtctccagagcatcctaactg
gaagatgaatgtgggaacaagggcacggagaagatgacttcctgaaccag
ggaagtcagcaggtctgtagtcagagagggaaggcaaacccttctatctc
atgtcatgtggacaaccccacactctcctggatcctctgaggtaaaaaga
gccttcctccacagctgatggtaactccatctctgaagacagtttacgga
gacagagatagcagtatcccactgttttttgtaacgaataaagcatggtt
tactgatcacttctaacctgtgcacactgtgagagtcgcgcgtgctcttc
tctttgtcttttgatacatactttttcagtcatctgtgatgactccttca
ttcttcagaggatcagtctcaacccttctcacaagtttcaatatatctag
tgcctatgccctctaatccaagtatcaaaggagaacatgaacattcagac
cgcttggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46346821_46348098
seq2: B6Ng01-103C10.b_47_1294

seq1  GAATTCCACCTGCCTCTGCCTCCTGGGTGCTGGGGTTAAAAGCATGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGCCTCTGCCTCCTGGGTGCTGGGGTTAAAAGCATGCACC  50

seq1  ACCACACTCAGTGTATATGATTTTTTTTAAAGTAGAAAAATTTAGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTCAGTGTATATGATTTTTTTTAAAGTAGAAAAATTTAGAATTC  100

seq1  CCATACAAAGAGGTTCAGTGAGTTCGGTTATAGGTGAATATTCTCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAAGAGGTTCAGTGAGTTCGGTTATAGGTGAATATTCTCTATCA  150

seq1  TGAGAGACAGCTTTCACTGACTAACATAAATGGCTTAAAGGAACTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACAGCTTTCACTGACTAACATAAATGGCTTAAAGGAACTATTTT  200

seq1  TGTTAATATAGCCTAGTCATACACCTTTGGGTTACTCATCAGGATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATATAGCCTAGTCATACACCTTTGGGTTACTCATCAGGATTTTAT  250

seq1  AGTTGCAAGTAAAAGCTTATGGCTAATTTGCATGCCAAAGAGTATGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAAGTAAAAGCTTATGGCTAATTTGCATGCCAAAGAGTATGGCAC  300

seq1  ACTTAACTTATAAAAACCTAGCCCTACCGTAGCTCATTATCATGTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTTATAAAAACCTAGCCCTACCGTAGCTCATTATCATGTGTCCT  350

seq1  TCCATGATAGAAGAGTACTAATGTGATCTTTTTAATGAATCACTAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATAGAAGAGTACTAATGTGATCTTTTTAATGAATCACTAAAACT  400

seq1  TTTGAAGTCATACGTATTTAAAACTCAAAGATCTCAAGGAGTTACGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTCATACGTATTTAAAACTCAAAGATCTCAAGGAGTTACGGTGA  450

seq1  GACACATCATAATAGGGAATTCAAAGCTATTTGATAAATCTGTTATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCATAATAGGGAATTCAAAGCTATTTGATAAATCTGTTATCAGA  500

seq1  CTAGCAGTTTTGACGAGATGGCCTTCCCAATGTGTGTACAAGGAAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTTTTGACGAGATGGCCTTCCCAATGTGTGTACAAGGAAATATC  550

seq1  TTTGCTTTAATCTTTCAGGCTACACTATATAAGCAATGTTCAGTGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAATCTTTCAGGCTACACTATATAAGCAATGTTCAGTGAACAC  600

seq1  TTTTGAAATATTTTTTAAGACTTTAAACTTTAAATTATTTGTTATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATATTTTTTAAGACTTTAAACTTTAAATTATTTGTTATGTGTC  650

seq1  TGTGTGGGGAATGGAAACGTCAGTGCAGGACTCAAAAAGGACAGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGAATGGAAACGTCAGTGCAGGACTCAAAAAGGACAGAAGAGA  700

seq1  GGATTGAACCTCTTGGAGCTGCAATTAAAGCTGCCTATGAGGAGCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAACCTCTTGGAGCTGCAATTAAAGCTGCCTATGAGGAGCCTGTG  750

seq1  TGGGTGCTGGGAACCAAACCTGGGTCCTCTGTTAAAGACAGTGGGCAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAACCAAACCTGGGTCCTCTGTTAAAGACAGTGGGCAATC  800

seq1  TAAACCACTGAGCCGTCTCTCTGGCTCCGGAAGAGATTTGCAATTTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACTGAGCCGTCTCTCTGGCTCCGGAAGAGATTTGCAATTTACAC  850

seq1  ATGAAATTATTACAAGTTAAAGCCTGTCTTCTTAACAATAGCATTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTATTACAAGTTAAAGCCTGTCTTCTTAACAATAGCATTAAATT  900

seq1  TTCATATTCATAGCAGTCACTAAGTCATAAAGAAGAACAACTTTTAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  TTCATATTCATAGCAGTCACTAAGTCATAAAGAAGAACAACTTCT-GAGC  949

seq1  ATTCATTGTTTCAATTACACAAATGAGAACATCTTGGAGATATACAAAAT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATTCATTGTTTCAATTACACAAATGAG-ACATCTTGGAGATATAC-AAAT  997

seq1  TTATTTTACTCATCAGAGATCATAGGACATGAAGTTCTTATGAGTATTAG  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTATTTTACTCATCAGAGATCATAGGACATGAAGTTCTTATGAGTA-TAG  1046

seq1  TAACCAATTACCCAGAATATTTGAGAAATGCAAA-TTCTACCTAACAGAT  1099
      ||    |||||||||||||||||||||||||||| ||||||   ||||| 
seq2  TA---CATTACCCAGAATATTTGAGAAATGCAAATTTCTAC--TACAGA-  1090

seq1  TATAAAACCACTACGTCCCATGCTTTAAAGTACTGGGCTGTAATTACTAA  1149
      |||||||||||||||| ||||||||| |||||||||||||  || |||||
seq2  TATAAAACCACTACGTTCCATGCTTT-AAGTACTGGGCTG--ATAACTAA  1137

seq1  AATGTTACCCAATCAAGCCTTCCTGTCTCTAGACTCCTGGCGATTTCTCC  1199
          ||||||||   || ||  ||||  ||||||  || |||||||||||
seq2  ----TTACCCAAATCAGGCT--CTGTTCCTAGACCTCT-GCGATTTCTCC  1180

seq1  CATCACATTTGGTACCCTAACTTACCTTGGGTCTGAAATTAGTGGTGGGG  1249
      |||| || |||| | | ||   |||||  || ||| |  |    ||||| 
seq2  CATC-CAATTGG-ATCATA--CTACCT--GGACTGGATAT----GTGGGT  1220

seq1  CCCACATACTC-ATGCTGGGCTTTTACAGT  1278
      ||   |||||| | ||||||||||||||||
seq2  CC--AATACTCTAGGCTGGGCTTTTACAGT  1248

seq1: chr18_46512931_46514103
seq2: B6Ng01-103C10.g_67_1227 (reverse)

seq1  ACCACCACAGCTGTCTGAATGTCACTGGTCTCCTTTGATTACTTTGGATA  50
      ||||||| ||| ||||||||||   || |||||||||| ||||| |  ||
seq2  ACCACCA-AGCGGTCTGAATGTTCATGTTCTCCTTTGA-TACTTGGATTA  48

seq1  GAGGGCATAGGCACTTAGATATATTGAAACCTTTGTGAGAAGGGTTTGGA  100
      |||||||||||||| |||||||||||||||  ||||||||||||||  ||
seq2  GAGGGCATAGGCAC-TAGATATATTGAAAC--TTGTGAGAAGGGTT--GA  93

seq1  GACTGAT-CTCTGAAGAATGAAGGAGTCACTCACAGATGACTGGACAGGT  149
      ||||||| ||||||||||||||||||||| ||||||||||||| | | ||
seq2  GACTGATCCTCTGAAGAATGAAGGAGTCA-TCACAGATGACTGAAAAAGT  142

seq1  ATGTATCCAAAAGACAAAGGAGAAGAGGCACGCGGCGACTCTCACAGTGT  199
      |||||| ||||||||||| ||||||| |||||| ||||||||||||||| 
seq2  ATGTAT-CAAAAGACAAA-GAGAAGA-GCACGC-GCGACTCTCACAGTG-  187

seq1  TGCACAGGTTAGAAGTGATCAGTAAACCATGCTTTATTCGTTACAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGTTAGAAGTGATCAGTAAACCATGCTTTATTCGTTACAAAAAA  237

seq1  CAGTGGGATACTGCTAATCTCTGTCTCCGTAAACTGTCTTCAGAGATGGA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGTGGGATACTGCT-ATCTCTGTCTCCGTAAACTGTCTTCAGAGATGGA  286

seq1  GTTACCATCAGCTGTGGAGGAAGGCTCTTTTTACCTCAGAGGATCCAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATCAGCTGTGGAGGAAGGCTCTTTTTACCTCAGAGGATCCAGGA  336

seq1  GAGTGTGGGGTTGTCCACATGACATGAGATAGAAGGGTTTGCCTTCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGGGTTGTCCACATGACATGAGATAGAAGGGTTTGCCTTCCCTC  386

seq1  TCTGACTACAGACCTGCTGACTT-CCTGGTTCAGGAAGTCATCTTCTCCG  448
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGACTACAGACCTGCTGACTTCCCTGGTTCAGGAAGTCATCTTCTCCG  436

seq1  TGCCCTTGTTCCCACATTCATCTTCCAGTTAGGATGCTCTGGAGACATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGTTCCCACATTCATCTTCCAGTTAGGATGCTCTGGAGACATCA  486

seq1  GGCTCTCTGACCAGTTCTCTCAAAAGCAGATACTGAAGGAACAAAACTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTGACCAGTTCTCTCAAAAGCAGATACTGAAGGAACAAAACTGT  536

seq1  TTTCTGTTTTGAGTTCTGAACGCTGCCTTCCAATCAGGTCTGACAATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTGAGTTCTGAACGCTGCCTTCCAATCAGGTCTGACAATTTC  586

seq1  CCCAACCTTTAAATAGAGCCAGGTTAATTGCACATGCTTGTTTGAAGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTTTAAATAGAGCCAGGTTAATTGCACATGCTTGTTTGAAGCCC  636

seq1  AGGCTTAGAATAGGAGCAAATTGGACTCATTAAACCTTGGAGAGACACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGAATAGGAGCAAATTGGACTCATTAAACCTTGGAGAGACACAA  686

seq1  GAGTTAAAGAAGGCTACTACTGTTCTCTTCTTCAATAAATGGCACAACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAGAAGGCTACTACTGTTCTCTTCTTCAATAAATGGCACAACAG  736

seq1  CTTGGAACCTGATTCACAGCTACACTCCAACACTCTCAATATTATGAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACCTGATTCACAGCTACACTCCAACACTCTCAATATTATGAGAG  786

seq1  AGATGAGCATTCAGCCTTCCAATGCTATTTCTACCCTACCATCCTAAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCATTCAGCCTTCCAATGCTATTTCTACCCTACCATCCTAAAGC  836

seq1  ACGGCAGCGTCTGTTGCTGAGCCTATTCCAGGGATGCTCATGGATTTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCGTCTGTTGCTGAGCCTATTCCAGGGATGCTCATGGATTTGCA  886

seq1  TAATGAATAGGGAACTTCTCAACAGAACCCAGAATCTCTAGGGAGGAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATAGGGAACTTCTCAACAGAACCCAGAATCTCTAGGGAGGAATG  936

seq1  CTTAGCTATCGCTAAGGCAATAGTAGAGAAGAGTAGGACCCAGCAGCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTATCGCTAAGGCAATAGTAGAGAAGAGTAGGACCCAGCAGCACA  986

seq1  TTCGCCGGGAGGCCGATTTGTGATGGCCCGACCATGGGACTTCGTGACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCGGGAGGCCGATTTGTGATGGCCCGACCATGGGACTTCGTGACAA  1036

seq1  GCACCTATGCGTATGAGTAATAGTATGAGGCACTATTGCTGAGCTCTCGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTATGCGTATGAGTAATAGTATGAGGCACTATTGCTGAGCTCTCGC  1086

seq1  AACCCCACCACTTTCCAGCAGGACACGCAGTGACTGCGGTGCACCTTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACCACTTTCCAGCAGGACACGCAGTGACTGCGGTGCACCTTGAA  1136

seq1  GATGTGACCACAGCTCTCTGAATTC  1173
      |||||||||||||||||||||||||
seq2  GATGTGACCACAGCTCTCTGAATTC  1161