BAC Information

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BAC

Clone NameB6Ng01-104A02
Chromosome18 (Build37)
Map Location 44,585,673 - 44,677,551
singlet/doubletdoublet
Overlap geneMcc
Upstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104A02.bB6Ng01-104A02.g
ACCDH912428DH912429
length1,107985
definitionDH912428|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A02, 5' end.DH912429|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,676,440 - 44,677,551)(44,585,673 - 44,586,656)
sequence
gaattcttaactgccttgacatgccccaggtggagagggctggttgtcac
attagtcaggtacttatgaagctaaccctatacttttctttctttttttt
ttaagatttatttattttattttatgtatatgtgtgctctacctgcatgt
atgtttgtatgccagaagaaggcattagatcccagtatagatggttgtaa
gccaccatatggttgctggaaatcgaactcaggacctctggaagaacagc
cagtgatcttaagtgcttgccatcatctctccagccttatcctatacttt
tcaatacccccgagataagggataagcgtgcacctgtttgtagtatcgtt
tttgtgatatccaaggataaagagggagagaagtggtgggaaaattgtct
atgtcttcattgccatacaactttgaattttctttttagttatgctccca
aaaacctacaccaaaaatgtttgctttttatccttgcaacatcctagttg
acaagtctatagggaacatacatctactggagaatataataacggttcca
cagttaaccacgcggtcctttgtggtatccatgctcttagaaccaaagaa
taatcttggtgttggtgtctcacaaaggaacatgtgaaccaagcagaagt
aggtcagtgaggcacttgtttttaaaaaggtgcgtaagaacccagactgg
gtgggcaagctcagaggggcacgaagtgcccttgattctgattaaatgag
ggtggtgacggtgttttccccattgtctgggggctgacttcatgctcttt
caaccttggttagttttacaagattcaaggcaatggaggtgagggaaagg
gacaaagcagtcgttacataaaagtttgattgggtgggaatattaaagca
tttatataaaggtctacagggaaaagataaaaagatttgcataaaagtct
taaaaggtgagagaaataaaaagattgaattctttgtcctaattaggttc
tatagtgttgacaaaaagactagcatttgatgtttcttagaacgccatcg
gacttaccaaaaaaaaaaaaaaagtagttattgtattggctgagtgacag
atgaggg
gaattccaggacagccagggctacagagaaaccctgtctcgaaaaaaaaa
gaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagtgaatcgagatgggaggccgtgggttcagagctgacctgtgta
aacatgggggttccattgcgagaacacttcaagggtgggggtgggttttg
tagcaagccattcctgctttacattggctaaacaaagtcagttgctgatt
tcttccccagttatatctgcagtgtgccgcagaaggaaaatactggtgct
gaagctcttggacgtttgcccatccccgctcttcacgaggactataccct
aatgaagatcagggcagaaattttagccaacaaagaatttgttctctgtt
gggctctaaaaacactgagcatcgttcagtcggtgacactgtacacttag
tgaacgtgattgctcttagggcactgtgttcatatgatgactggacgtac
acccaatcaaacatttatcaccgaaagcatttacagaaggaagtgtttgg
accaataagagcagagcgaggggttcatgcttttctctacactcttttct
ctttgaacatgataaaaccttaactcttggcagctctaacattttatatt
gttgcgtagagttttttgtgggccataatgtatagaatacagaagcctgg
tagttttggtccacgccaatgatggagaaaaaaaaaataaaactgaaagc
atttccttctgttaaggtaatgtctgttgtaggaactagaagacttccag
gtctcctcacggtggcaagtactctataagcctcttctacaatttataga
ataatcactaaggctgtggggctcggcctgtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44676440_44677551
seq2: B6Ng01-104A02.b_44_1150 (reverse)

seq1  CCCTCATCTGTCACTCCAGCCCATACAATAACTACTTTTTTTTTTTTTTT  50
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CCCTCATCTGTCACT-CAGCCAATACAATAACTACTTTTTTTTTTTTTTT  49

seq1  TGGTAGTCCGATGGCGTTCTAAGAAACATCAAATGCTAGTCTTTTCTGTC  100
       |  ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTAAGTCCGATGGCGTTCTAAGAAACATCAAATGCTAGTCTTTT-TGTC  98

seq1  AAACACTATAGAACCTAATTAGGACAAAGAATTCAATTCTTTTTATTTCT  150
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -AACACTATAGAACCTAATTAGGACAAAGAATTCAA-TCTTTTTATTTCT  146

seq1  CTCACCTTTTTAAGACTTTTATGCAAATCTTTTTATCTTTTCCCTTGTAG  200
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCACC-TTTTAAGACTTTTATGCAAATCTTTTTATCTTTTCCC-TGTAG  194

seq1  ACCTTTATATAAATGCTTTAATATTCCCACCCAATCAAACTTTTATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATATAAATGCTTTAATATTCCCACCCAATCAAACTTTTATGTAA  244

seq1  CGACTGCTTTGTCCC-TTCCCTCACCTCCATTGCCTTGAATCTTGTAAAA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGACTGCTTTGTCCCTTTCCCTCACCTCCATTGCCTTGAATCTTGTAAAA  294

seq1  CTAACCAAGGTTGAAAGAGCATGAAGTCAGCCCCCAGACAATGGGGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAGGTTGAAAGAGCATGAAGTCAGCCCCCAGACAATGGGGAAAA  344

seq1  CACCGTCACCACCCTCATTTAATCAGAATCAAGGGCACTTCGTGCCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCACCACCCTCATTTAATCAGAATCAAGGGCACTTCGTGCCCCTC  394

seq1  TGAGCTTGCCCACCCAGTCTGGGTTCTTACGCACCTTTTTAAAAACAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGCCCACCCAGTCTGGGTTCTTACGCACCTTTTTAAAAACAAGT  444

seq1  GCCTCACTGACCTACTTCTGCTTGGTTCACATGTTCCTTTGTGAGACACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTGACCTACTTCTGCTTGGTTCACATGTTCCTTTGTGAGACACC  494

seq1  AACACCAAGATTATTCTTTGGTTCTAAGAGCATGGATACCACAAAGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGATTATTCTTTGGTTCTAAGAGCATGGATACCACAAAGGACC  544

seq1  GCGTGGTTAACTGTGGAACCGTTATTATATTCTCCAGTAGATGTATGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTTAACTGTGGAACCGTTATTATATTCTCCAGTAGATGTATGTTC  594

seq1  CCTATAGACTTGTCAACTAGGATGTTGCAAGGATAAAAAGCAAACATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGACTTGTCAACTAGGATGTTGCAAGGATAAAAAGCAAACATTTT  644

seq1  TGGTGTAGGTTTTTGGGAGCATAACTAAAAAGAAAATTCAAAGTTGTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGGTTTTTGGGAGCATAACTAAAAAGAAAATTCAAAGTTGTATG  694

seq1  GCAATGAAGACATAGACAATTTTCCCACCACTTCTCTCCCTCTTTATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAGACATAGACAATTTTCCCACCACTTCTCTCCCTCTTTATCCT  744

seq1  TGGATATCACAAAAACGATACTACAAACAGGTGCACGCTTATCCCTTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCACAAAAACGATACTACAAACAGGTGCACGCTTATCCCTTATC  794

seq1  TCGGGGGTATTGAAAAGTATAGGATAAGGCTGGAGAGATGATGGCAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGTATTGAAAAGTATAGGATAAGGCTGGAGAGATGATGGCAAGCA  844

seq1  CTTAAGATCACTGGCTGTTCTTCCAGAGGTCCTGAGTTCGATTTCCAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATCACTGGCTGTTCTTCCAGAGGTCCTGAGTTCGATTTCCAGCA  894

seq1  ACCATATGGTGGCTTACAACCATCTATACTGGGATCTAATGCCTTCTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATGGTGGCTTACAACCATCTATACTGGGATCTAATGCCTTCTTCT  944

seq1  GGCATACAAACATACATGCAGGTAGAGCACACATATACATAAAATAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAAACATACATGCAGGTAGAGCACACATATACATAAAATAAAAT  994

seq1  AAATAAATCTTAAAAAAAAAAGAAAGAAAAGTATAGGGTTAGCTTCATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTAAAAAAAAAAGAAAGAAAAGTATAGGGTTAGCTTCATAA  1044

seq1  GTACCTGACTAATGTGACAACCAGCCCTCTCCACCTGGGGCATGTCAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGACTAATGTGACAACCAGCCCTCTCCACCTGGGGCATGTCAAGG  1094

seq1  CAGTTAAGAATTC  1112
      |||||||||||||
seq2  CAGTTAAGAATTC  1107

seq1: chr18_44585673_44586656
seq2: B6Ng01-104A02.g_65_1049

seq1  GAATTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCGAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCGAAAAAAAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  100

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGG--------AAGAAAGAAAGAAA  142
      ||||||||||||||||||||||||||||        ||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAA  150

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  200

seq1  AAGAAAGTGAATCGAGATGGGAGGCCGTGGGTTCAGAGCTGACCTGTGTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGAATCGAGATGGGAGGCCGTGGGTTCAGAGCTGACCTGTGTA  250

seq1  AACATGGGGGTTCCATTGCGAGAACACTTCAAGGGTGGGGGTGGGTTTTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGGGTTCCATTGCGAGAACACTTCAAGGGTGGGGGTGGGTTTTG  300

seq1  TAGCAAGCCATTCCTGCTTTACATTGGCTAAACAAAGTCAGTTGCTGATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCCATTCCTGCTTTACATTGGCTAAACAAAGTCAGTTGCTGATT  350

seq1  TCTTCCCCAGTTATATCTGCAGTGTGCCGCAGAAGGAAAATACTGGTGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCAGTTATATCTGCAGTGTGCCGCAGAAGGAAAATACTGGTGCT  400

seq1  GAAGCTCTTGGACGTTTGCCCATCCCCGCTCTTCACGAGGACTATACCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTTGGACGTTTGCCCATCCCCGCTCTTCACGAGGACTATACCCT  450

seq1  AATGAAGATCAGGGCAGAAATTTTAGCCAACAAAGAATTTGTTCTCTGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATCAGGGCAGAAATTTTAGCCAACAAAGAATTTGTTCTCTGTT  500

seq1  GGGCTCTAAAAACACTGAGCATCGTTCAGTCGGTGACACTGTACACTTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAAAAACACTGAGCATCGTTCAGTCGGTGACACTGTACACTTAG  550

seq1  TGAACGTGATTGCTCTTAGGGCACTGTGTTCATATGATGACTGGACGTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTGATTGCTCTTAGGGCACTGTGTTCATATGATGACTGGACGTAC  600

seq1  ACCCAATCAAACATTTATCACCGAAAGCATTTACAGAAGGAAGTGTTTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCAAACATTTATCACCGAAAGCATTTACAGAAGGAAGTGTTTGG  650

seq1  ACCAATAAGAGCAGAGCGAGGGGTTCATGCTTTTCTCTACACTCTTTTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAAGAGCAGAGCGAGGGGTTCATGCTTTTCTCTACACTCTTTTCT  700

seq1  CTTTGAACATGATAAAACCTTAACTCTTGGCAGCTCTAACATTTTATATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACATGATAAAACCTTAACTCTTGGCAGCTCTAACATTTTATATT  750

seq1  GTTGCGTAGAGTTTTTTGTGGGCCATAATGTATAGAATACAGAAGCCTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTAGAGTTTTTTGTGGGCCATAATGTATAGAATACAGAAGCCTGG  800

seq1  TAGTTTTGGTCCACGCCAATGATGGAGAAAAAAAAAA-AAAACTGAAAAG  841
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  TAGTTTTGGTCCACGCCAATGATGGAGAAAAAAAAAATAAAACTG-AAAG  849

seq1  CATTTCCTTTCTGTTAAGGTAATGTCTGTATGTAGGAACTAGAAGACTTC  891
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTTCC-TTCTGTTAAGGTAATGTCTGT-TGTAGGAACTAGAAGACTTC  897

seq1  CAGGTCTCCCTCACGGTGGCAAGGTCCTTATTAAGCCTCTTCTAACAGTT  941
      ||||||| |||||||||||||| || ||   |||||||||||| ||| ||
seq2  CAGGTCT-CCTCACGGTGGCAA-GTACTCTATAAGCCTCTTCT-ACAATT  944

seq1  TTTAGAATAAACACCTAAGGCTGTGTGGCTCGGCCTGCTCTTC  984
      | |||||||| || ||||||||||| ||||||||||| |||||
seq2  TATAGAATAATCA-CTAAGGCTGTGGGGCTCGGCCTG-TCTTC  985