BAC Information

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BAC

Clone NameB6Ng01-104H19
Chromosome18 (Build37)
Map Location 69,956,001 - 70,135,408
singlet/doubletdoublet
Overlap geneCcdc68
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H19.bB6Ng01-104H19.g
ACCDH912773DH912774
length7531,153
definitionDH912773|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H19, 5' end.DH912774|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,956,001 - 69,956,753)(70,134,241 - 70,135,408)
sequence
gaattctaccagggctcttaccatgactccttccacaccctctcttagaa
aagggaaaagttgaattcaaagtaataatagaaataaattaataataata
ataataataataataataataataataataataataataataataataat
aatagaacaatttggtgggaagccaggggaagcagttacatcactcactg
ggcttatcatcaccaggggagtgggaacatggagaagttttctttgcaag
cgatacaagggtttttaacttcaaagtcatcgaaaggtgctttttcagaa
ttgacacgatgccgcggcaatgtatccctgaatgtctcttcagaacgcgg
ggcccaacaatgaaaacacgctcttgataaggcgtgtaatgggcagaatt
atgctaatcgaggaaaaccttacagggtgagtaatttagtaacccctttc
tgagcataagagcttattttaaagttctaaatggcaccataaaagtagtc
aggcatatatctccatactgatactggataataaacacagtcggagtcta
aagtaccttgtgcgacacccctctgtgcctagtagcctgtacttccccac
taatcactggagcctaaactttaatacgcccggctttgtttacctaacac
tttgtcaagtccaatacatcttggttccttacctttcccacaaaggcaaa
aggaagcttgaaatcaatctctctctctctctctctctctctctctctct
ctc
gaattccagtccactctctgcttcatgctaactgttcaagatgcgctatc
agcttctagctcctgctatcatactgtccccaccactgtgaactctaacc
atcatctggaacacgtaagccaaaacaaagcctttcatctctaagttaca
tgggttagggtgttttatcacaatataaaagtaactcatacaacggcatt
gtggtttccttagtagtgccgtccaaagggcacagatttgaattttcagg
aaccaagcagaattttgagacttttgtggcccttattatttgtgtgacac
tgtaaaacctctcctactttgctattgcaaaaaaattcctcccaacactt
tgtttctgctttccagttaacatttagacatattgtcaatttaagtagga
tcattttatgtaatatgaggtatttatcaatattttcccccaatcagaaa
tttctagtgtcttcagtaacattaacattctttgtcctgtgggatagtat
tttatactttcgtcaaaataaaaaaagttgatttaggtttctcttttcca
tttattgatacatttctttcctttaactaactgttaatatgagttttgct
tgtgaattttataattggtgatctttaactttatttatattagtaatatt
ttactttgtccagcttcaagtataattgacaaattaaaactatagattca
aggcatagaccacaatattttgatacacataagccactacaattatcatt
gtcaagtaaataaaaaaatataaaaatatataccacttcatgtatacatt
tatgatttagaaacttctctcattagatttgctgtctcagatatctggaa
actcatagtttttgggtcatttgagttctctgtattaactatataagata
tggaagaaagtctgaccttttctttgtcgcctgtgtactgtactggccta
gttttgtgtcacctgacacagttggagttatcacagagaaaggagtttga
gtgaggaaatgcttcatgagatacactgtaaggcattttctcaattaatg
atcaggggatggaccttgtgggtggacatatctctaggtgggtagtcctg
gttctataagagacacggtgacaagccaagggagacagccagtatagaca
tcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69956001_69956753
seq2: B6Ng01-104H19.b_46_798

seq1  GAATTCTACCAGGGCTCTTACCATGACTCCTTCCACACCCTCTCTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAGGGCTCTTACCATGACTCCTTCCACACCCTCTCTTAGAA  50

seq1  AAGGGAAAAGTTGAATTCAAAGTAATAATAGAAATAAATTAATAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAAGTTGAATTCAAAGTAATAATAGAAATAAATTAATAATAATA  100

seq1  ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT  150

seq1  AATAGAACAATTTGGTGGGAAGCCAGGGGAAGCAGTTACATCACTCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACAATTTGGTGGGAAGCCAGGGGAAGCAGTTACATCACTCACTG  200

seq1  GGCTTATCATCACCAGGGGAGTGGGAACATGGAGAAGTTTTCTTTGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATCATCACCAGGGGAGTGGGAACATGGAGAAGTTTTCTTTGCAAG  250

seq1  CGATACAAGGGTTTTTAACTTCAAAGTCATCGAAAGGTGCTTTTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACAAGGGTTTTTAACTTCAAAGTCATCGAAAGGTGCTTTTTCAGAA  300

seq1  TTGACACGATGCCGCGGCAATGTATCCCTGAATGTCTCTTCAGAACGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACGATGCCGCGGCAATGTATCCCTGAATGTCTCTTCAGAACGCGG  350

seq1  GGCCCAACAATGAAAACACGCTCTTGATAAGGCGTGTAATGGGCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAACAATGAAAACACGCTCTTGATAAGGCGTGTAATGGGCAGAATT  400

seq1  ATGCTAATCGAGGAAAACCTTACAGGGTGAGTAATTTAGTAACCCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATCGAGGAAAACCTTACAGGGTGAGTAATTTAGTAACCCCTTTC  450

seq1  TGAGCATAAGAGCTTATTTTAAAGTTCTAAATGGCACCATAAAAGTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAAGAGCTTATTTTAAAGTTCTAAATGGCACCATAAAAGTAGTC  500

seq1  AGGCATATATCTCCATACTGATACTGGATAATAAACACAGTCGGAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATATCTCCATACTGATACTGGATAATAAACACAGTCGGAGTCTA  550

seq1  AAGTACCTTGTGCGACACCCCTCTGTGCCTAGTAGCCTGTACTTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCTTGTGCGACACCCCTCTGTGCCTAGTAGCCTGTACTTCCCCAC  600

seq1  TAATCACTGGAGCCTAAACTTTAATACGCCCGGCTTTGTTTACCTAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTGGAGCCTAAACTTTAATACGCCCGGCTTTGTTTACCTAACAC  650

seq1  TTTGTCAAGTCCAATACATCTTGGTTCCTTACCTTTCCCACAAAGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAGTCCAATACATCTTGGTTCCTTACCTTTCCCACAAAGGCAAA  700

seq1  AGGAAGCTTGAAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTTGAAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  750

seq1  CTC  753
      |||
seq2  CTC  753

seq1: chr18_70134241_70135408
seq2: B6Ng01-104H19.g_67_1219 (reverse)

seq1  GGATGTTCTTTACTGGCTTGCTTCCCTTGGCTTGCTCAGCCTGCTCTCTT  50
      ||||| ||| ||||||| ||  |||||||||||| ||| | || ||||||
seq2  GGATG-TCTATACTGGC-TGTCTCCCTTGGCTTG-TCACCGTG-TCTCTT  46

seq1  ATAGAACCCAGGACTACCAGCCCAGAGATAGTCCCACCCACAAGGGGCCA  100
      |||||| |||||||||||  || |||||||   |||||||||| || |||
seq2  ATAGAA-CCAGGACTACCCACCTAGAGATATGTCCACCCACAA-GGTCCA  94

seq1  TTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGTATCTCATGG  150
      |   ||| |||||| |||||||||||||||||||||| |||||||||| |
seq2  T---CCCCTGATCATTAATTGAGAAAATGCCTTACAG-TGTATCTCAT-G  139

seq1  AGGCATTTCCTCAACTCAAACTCCTTTCTCTGTGATAACTCCAGCTGTGT  200
      | |||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  AAGCATTTCCTC-ACTCAAACTCCTTTCTCTGTGATAACTCCAACTGTGT  188

seq1  CAGGTTGACACAAAACTA-GCCAGTACAGGTACACAGGCGACAAAGGAAA  249
      |||| ||||||||||||| ||||||||| |||||||||||||||| ||||
seq2  CAGG-TGACACAAAACTAGGCCAGTACA-GTACACAGGCGACAAA-GAAA  235

seq1  AGGTCAGACTTTTCTTCCATATCTTATATAGTTAATACAGAGAACTCAAA  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAC-TTTCTTCCATATCTTATATAGTTAATACAGAGAACTCAAA  284

seq1  TGACCCAAAAACTATGAGTTTCCAGATATCTGAGACAGCAAATCTAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAAAAACTATGAGTTTCCAGATATCTGAGACAGCAAATCTAATGA  334

seq1  GAGAAGTTTCTAAATCATAAATGTATACATGAAGTGGTATATATTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTCTAAATCATAAATGTATACATGAAGTGGTATATATTTTTAT  384

seq1  ATTTTTTTATTTACTTGACAATGATAATTGTAGTGGCTTATGTGTATCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATTTACTTGACAATGATAATTGTAGTGGCTTATGTGTATCAA  434

seq1  AATATTGTGGTCTATGCCTTGAATCTATAGTTTTAATTTGTCAATTATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTGGTCTATGCCTTGAATCTATAGTTTTAATTTGTCAATTATAC  484

seq1  TTGAAGCTGGACAAAGTAAAATATTACTAATATAAATAAAGTTAAAGATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGGACAAAGTAAAATATTACTAATATAAATAAAGTTAAAGATC  534

seq1  ACCAATTATAAAATTCACAAGCAAAACTCATATTAACAGTTAGTTAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTATAAAATTCACAAGCAAAACTCATATTAACAGTTAGTTAAAGG  584

seq1  AAAGAAATGTATCAATAAATGGAAAAGAGAAACCTAAATCAACTTTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGTATCAATAAATGGAAAAGAGAAACCTAAATCAACTTTTTTT  634

seq1  ATTTTGACGAAAGTATAAAATACTATCCCACAGGACAAAGAATGTTAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACGAAAGTATAAAATACTATCCCACAGGACAAAGAATGTTAATG  684

seq1  TTACTGAAGACACTAGAAATTTCTGATTGGGGGAAAATATTGATAAATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAGACACTAGAAATTTCTGATTGGGGGAAAATATTGATAAATAC  734

seq1  CTCATATTACATAAAATGATCCTACTTAAATTGACAATATGTCTAAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTACATAAAATGATCCTACTTAAATTGACAATATGTCTAAATGT  784

seq1  TAACTGGAAAGCAGAAACAAAGTGTTGGGAGGAATTTTTTTGCAATAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAAAGCAGAAACAAAGTGTTGGGAGGAATTTTTTTGCAATAGCA  834

seq1  AAGTAGGAGAGGTTTTACAGTGTCACACAAATAATAAGGGCCACAAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAGAGGTTTTACAGTGTCACACAAATAATAAGGGCCACAAAAGT  884

seq1  CTCAAAATTCTGCTTGGTTCCTGAAAATTCAAATCTGTGCCCTTTGGACG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTCTGCTTGGTTCCTGAAAATTCAAATCTGTGCCCTTTGGACG  934

seq1  GCACTACTAAGGAAACCACAATGCCGTTGTATGAGTTACTTTTATATTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTAAGGAAACCACAATGCCGTTGTATGAGTTACTTTTATATTGT  984

seq1  GATAAAACACCCTAACCCATGTAACTTAGAGATGAAAGGCTTTGTTTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACACCCTAACCCATGTAACTTAGAGATGAAAGGCTTTGTTTTGG  1034

seq1  CTTACGTGTTCCAGATGATGGTTAGAGTTCACAGTGGTGGGGACAGTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTGTTCCAGATGATGGTTAGAGTTCACAGTGGTGGGGACAGTATG  1084

seq1  ATAGCAGGAGCTAGAAGCTGATAGCGCATCTTGAACAGTTAGCATGAAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGAGCTAGAAGCTGATAGCGCATCTTGAACAGTTAGCATGAAGC  1134

seq1  AGAGAGTGGACTGGAATTC  1168
      |||||||||||||||||||
seq2  AGAGAGTGGACTGGAATTC  1153