BAC Information

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BAC

Clone NameB6Ng01-104K09
Chromosome18 (Build37)
Map Location 28,521,599 - 28,665,330
singlet/doubletdoublet
Overlap geneEG625997
Upstream geneEG665646, EG271505
Downstream geneBC051408, LOC100040930, 4930578E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104K09.bB6Ng01-104K09.g
ACCDH912884DH912885
length5321,105
definitionDH912884|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K09, 5' end.DH912885|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,521,599 - 28,522,136)(28,664,197 - 28,665,330)
sequence
tacatcttatgatattataagatacatctaatggcattaaaaaaaaaaac
ccacagccaataaaaaggagagtgtagagcctagttccaagtaatagacc
cacaatacaactcttgcacctggacagtgtatcattgaagaagaaggtac
aaaaaagattgttaaagctacaggaacagggaacacgctgtaagattgtc
tcctaggtaatggcagagactacatccatgaagtctcaccaacatggcta
cctaaaacaacctaaacagccacaacaccaacagacacctttacatgaaa
gaggtaaatccctagacagcaaactacaggaaactaaagaataaagacag
cagggaaatagttttcctgagagtaaaacaattgtttatgcagtaatagt
catccttgaaaaaatacatataagtgacattacatacatggatcaagtta
catttatgtacctaggaattatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatat
gaattccaccaaaggccttcataagagtcccctgttttctacaaaaacaa
aacaaaacaacaagacacaaaagaaaaatcaccaagcaagcaagcaagca
agcaaacaaacaaaaattattgcatcattctgtaggggaagatgctgata
ctaaagtctggttccttaattagttcttgatttggtcaataaagaaggct
gagagctcattgctgggcagaagggatagctgagacttccagctcccagg
aggaagaggagtcatagggaaagagaaggtgcttttttgggacagctttt
ggaaggaggagcatgaaagaacaatggaatatctcaggaaagctaaaacc
atcagcctctgccaccagtgggtagccaaggagattgacagagtctagct
ggtaagtttaggacaagagattctgtgtccagcaactgtgctatctgaca
agttctaaagtaataaagctctctgagtatttttcatctacagatcaatg
ataggtagagagagagagagagagagagagagggagagagagagagagag
accaggtcagtgagggcagcttggctgagccaagaagaacaagaggaagc
caggaggagccagagcccaggctgtagctccagggtcgcatcccatgggc
aaaagaaatagtgtattttaaaaaattgtacacaatacacttgtggccaa
tgttttggaaaacaggagttacttgggtaaactaacacccctaagatagc
cagttgtaaataaacagctttttgattttcttatttgtacacatttcacg
aatttggacaatatcttccttggactttcagctatattgctacactaagt
gttaagaatagttgtgtgtgacacaccaccacacacacactcacacacac
acactcacttactcagaagagcagaatatattttcggaaagaggagatgg
ttcataaccatgaaacgagtacagatgaccatattgcttaaattgtgact
taagctgagaagataagaggtctccaaagtaatgaggattgttttgtagt
tacaaggaatgcttatgtgtagacagctgtgatgtgctctcctggctaaa
agaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28521599_28522136
seq2: B6Ng01-104K09.b_44_581

seq1  GAATTCTACATCTTATGATATTATAAGATACATCTAATGGCATTAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTATGATATTATAAGATACATCTAATGGCATTAAAAAA  50

seq1  AAAAACCCACAGCCAATAAAAAGGAGAGTGTAGAGCCTAGTTCCAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCACAGCCAATAAAAAGGAGAGTGTAGAGCCTAGTTCCAAGTAA  100

seq1  TAGACCCACAATACAACTCTTGCACCTGGACAGTGTATCATTGAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCACAATACAACTCTTGCACCTGGACAGTGTATCATTGAAGAAGA  150

seq1  AGGTACAAAAAAGATTGTTAAAGCTACAGGAACAGGGAACACGCTGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAAAAAGATTGTTAAAGCTACAGGAACAGGGAACACGCTGTAAG  200

seq1  ATTGTCTCCTAGGTAATGGCAGAGACTACATCCATGAAGTCTCACCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCTAGGTAATGGCAGAGACTACATCCATGAAGTCTCACCAACA  250

seq1  TGGCTACCTAAAACAACCTAAACAGCCACAACACCAACAGACACCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCTAAAACAACCTAAACAGCCACAACACCAACAGACACCTTTAC  300

seq1  ATGAAAGAGGTAAATCCCTAGACAGCAAACTACAGGAAACTAAAGAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGTAAATCCCTAGACAGCAAACTACAGGAAACTAAAGAATAA  350

seq1  AGACAGCAGGGAAATAGTTTTCCTGAGAGTAAAACAATTGTTTATGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGGGAAATAGTTTTCCTGAGAGTAAAACAATTGTTTATGCAGT  400

seq1  AATAGTCATCCTTGAAAAAATACATATAAGTGACATTACATACATGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATCCTTGAAAAAATACATATAAGTGACATTACATACATGGATC  450

seq1  AAGTTACATTTATGTACCTAGGAATTATATATATATATATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATTTATGTACCTAGGAATTATATATATATATATATATATATAT  500

seq1  ATATATATATATATATATATATATATATATATATATAT  538
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATAT  538

seq1: chr18_28664197_28665330
seq2: B6Ng01-104K09.g_70_1174 (reverse)

seq1  TTTCTTTTAGCCACTGAGAGCAACTACACATGCTGTCTACACAATAAATG  50
      |||||||||||||  |||||| ||  |||| ||||||||||| ||||  |
seq2  TTTCTTTTAGCCA-GGAGAGC-ACATCACA-GCTGTCTACAC-ATAA--G  44

seq1  AAATCCTTTGAAAACTATCAAATACATTGCTCATTACTTTTGGAAGGACT  100
       | |||||    ||||| |||| ||| | |||||||| ||||||  ||| 
seq2  CATTCCTT--GTAACTA-CAAA-ACAATCCTCATTAC-TTTGGA--GACC  87

seq1  TCTTATCCTTCTCAGCTTTAGATCACAATTTTAAGGCAAATATTTGTTCA  150
      |||||| ||||||||||| || |||||||||  | |||   || || |||
seq2  TCTTAT-CTTCTCAGCTTAAG-TCACAATTT--AAGCA---ATATGGTCA  130

seq1  TTCTGTACTCGTTTCATGGTTTATGAAACCATCTTCCTCTTTTCCGAAAA  200
       |||||||||||||||||| ||||| ||||||| ||||| ||||||||||
seq2  -TCTGTACTCGTTTCATGG-TTATG-AACCATC-TCCTC-TTTCCGAAAA  175

seq1  TATATTTCTGCTCTTTACTGTGTAAGTGTGTGTGTGTGTGTGTGTGTGTG  250
      |||| ||||||||||  ||| ||||||| ||||||||||||| |||||||
seq2  TATA-TTCTGCTCTT--CTGAGTAAGTGAGTGTGTGTGTGTGAGTGTGTG  222

seq1  TGTGTGTGTGTGTGTTCACACACAACTATTCTTAACACTTAGTGTAGCAA  300
      |||| ||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TGTG-GTG-GTGTG-TCACACACAACTATTCTTAACACTTAGTGTAGCAA  269

seq1  TATAGCTGAAAGTCCAAGGAAGATATTGTCCAAATTCGTGAAATGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGAAAGTCCAAGGAAGATATTGTCCAAATTCGTGAAATGTGTAC  319

seq1  AAATAAGAAAATC-AAAAGCTGTTTATTTACAACTGGCTATCTTAGGGGT  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAATCAAAAAGCTGTTTATTTACAACTGGCTATCTTAGGGGT  369

seq1  GTTAGTTTACCCAAGTAACTCCTGTTTTCC-AAACATTGGCCACAAGTGT  448
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTAGTTTACCCAAGTAACTCCTGTTTTCCAAAACATTGGCCACAAGTGT  419

seq1  ATTGTGTACAATTTTTTAAAATACACTATTTCTTTTGCCCATGGGATGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTACAATTTTTTAAAATACACTATTTCTTTTGCCCATGGGATGCG  469

seq1  ACCCTGGAGCTACAGCCTGGGCTCTGGCTCCTCCTGGCTTCCTCTTGTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAGCTACAGCCTGGGCTCTGGCTCCTCCTGGCTTCCTCTTGTTC  519

seq1  TTCTTGGCTCAGCCAAGCTGCCCTCACTGACCTGGTCTCTCTCTCTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTCAGCCAAGCTGCCCTCACTGACCTGGTCTCTCTCTCTCTCT  569

seq1  CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTACCTATCATTGATCTGTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTACCTATCATTGATCTGTAGA  619

seq1  TGAAAAATACTCAGAGAGCTTTATTACTTTAGAACTTGTCAGATAGCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATACTCAGAGAGCTTTATTACTTTAGAACTTGTCAGATAGCACA  669

seq1  GTTGCTGGACACAGAATCTCTTGTCCTAAACTTACCAGCTAGACTCTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGACACAGAATCTCTTGTCCTAAACTTACCAGCTAGACTCTGTC  719

seq1  AATCTCCTTGGCTACCCACTGGTGGCAGAGGCTGATGGTTTTAGCTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTGGCTACCCACTGGTGGCAGAGGCTGATGGTTTTAGCTTTCC  769

seq1  TGAGATATTCCATTGTTCTTTCATGCTCCTCCTTCCAAAAGCTGTCCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTCCATTGTTCTTTCATGCTCCTCCTTCCAAAAGCTGTCCCAA  819

seq1  AAAAGCACCTTCTCTTTCCCTATGACTCCTCTTCCTCCTGGGAGCTGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACCTTCTCTTTCCCTATGACTCCTCTTCCTCCTGGGAGCTGGAA  869

seq1  GTCTCAGCTATCCCTTCTGCCCAGCAATGAGCTCTCAGCCTTCTTTATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCTATCCCTTCTGCCCAGCAATGAGCTCTCAGCCTTCTTTATTG  919

seq1  ACCAAATCAAGAACTAATTAAGGAACCAGACTTTAGTATCAGCATCTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCAAGAACTAATTAAGGAACCAGACTTTAGTATCAGCATCTTCC  969

seq1  CCTACAGAATGATGCAATAATTTTTGTTTGTTTGCTTGCTTGCTTGCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGAATGATGCAATAATTTTTGTTTGTTTGCTTGCTTGCTTGCTTG  1019

seq1  CTTGGTGATTTTTCTTTTGTGTCTTGTTGTTTTGTTTTGTTTTTGTAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATTTTTCTTTTGTGTCTTGTTGTTTTGTTTTGTTTTTGTAGAA  1069

seq1  AACAGGGGACTCTTATGAAGGCCTTTGGTGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGACTCTTATGAAGGCCTTTGGTGGAATTC  1105