BAC Information

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BAC

Clone NameB6Ng01-104M01
Chromosome18 (Build37)
Map Location 65,304,994 - 65,506,105
singlet/doubletdoublet
Overlap geneNedd4l, Alpk2
Upstream geneSt8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneLOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M01.bB6Ng01-104M01.g
ACCDH912958DH912959
length1,086644
definitionDH912958|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M01, 5' end.DH912959|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,505,026 - 65,506,105)(65,304,994 - 65,305,698)
sequence
gaattcagaagtgctgcgtctgcttcactttgccccagagaggtttgcat
ttctttttgaggtcgtgagactaccagtgtacagtatgggtgtgtagtct
caggtcctgggtaaagaatctcgctgacgaggaaattagcattaattgta
gaatgtgagctagctacatgggggaagctgtatttgttcagtgtgcgttg
taccaagaatcatggcagccacataataggcactaataggcacatcaagt
gagcaagtaggatattaactgcctggttaggtaggattcccatgattatt
gactaccttcccttctttactttcctgagcgcgttcttcccttagctcaa
tataagatgctgctgtcaaccttccacaaacaggatgcacttccaagggc
tcttctagtcctgaatgggttggtttattctatggtccagctgcataaac
tgtgggttgtgaccccacagtgaatgtgggggccaggtaaagtttagcaa
tggtaaaaagttaccaagtatgcaatagccaataattagttcaaaatcaa
atacattaattacatcatgtatattaatataaatacaggtataatagata
tatcatatacattaataagcccatacatcaatcagggctgtttatcaccg
taacaatggaactggcccaagttgcattgtgggacatcactgtagcactg
ggtgggaacccatgtatgcagtgttgtgctgggcatgccaacaccccaca
tagcaccacacacaccacacgacaccaacaaatgctgccgtgtgaagcct
cagttcagatggaggcttgtgtcgcttaggaacttcagcgtatttactgc
acatatacagtcttctgctcatgtagaataaagaataaattgaaaaccat
gactttcgtatttttcctactctatactttttcagcattatgatcaaatc
accatgtctttgggaggtattctgctacaatgttggtcttattgactgag
attctaaacaaaacaaaccattgggggtactgtgataatggcccatcata
aagcgcttcttgtccaaacatgaaggccagagtttg
gaattcaaggagggcaggaacctagagccacaaaagggtgctgcttactg
gagaacctcctggcttgctcagcctgctttcttacagaaaccaggaccac
cagctcagggatggctccacccacagtggtctgggccctcccccccatca
attgctatctaagaaaatggtcccagaggcttgtctccagcttgatctca
tggaggcattttctcaattgaagctccctcttctctgataattccaaaag
gcttcaggcattcctgactctgtgggcttccctgttgtgttcttcaggtt
aaaactggaaagtcatgctttgagacaacgttaatcagttggccattttt
catgtggcggttcccagacactctcttccctacagtaagaaccatgcatt
tgtcaagggaagatattgactcatagtctttaggagtcataagtgaggag
ctggagagatggcttatcagtttagagcatttgctgtgtttcttctagac
aacctgagttcagaatgcatcacccacgtccaatggctcactgacacctc
aagttccactccaagggtcctgagatcttctgggctctgcaggctctcgc
acattgaacagatacgtctacttgttcagacacatgcacaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65505026_65506105
seq2: B6Ng01-104M01.b_41_1113 (reverse)

seq1  TCATGTTTGTGCAAGAAGCGCTTTACTGATGGGCCATATCCACAGT--CC  48
      |||||||||  |||||||||||||| |||||||||||   ||||||  ||
seq2  TCATGTTTGGACAAGAAGCGCTTTA-TGATGGGCCATTATCACAGTACCC  49

seq1  CCCATTGTTTGTTTTGTTTTATGAATCTCAAGTCAATAAGACCAAACATC  98
      || || |||||||||||||   ||||||| ||||||||||||| ||||| 
seq2  CCAATGGTTTGTTTTGTTT--AGAATCTC-AGTCAATAAGACC-AACATT  95

seq1  GTAGCAGAATACACTCCAAAGACATGCTGATTTGATACATAAATGCTGAA  148
      ||||||||||||   ||||||||||| ||||||||| ||| |||||||||
seq2  GTAGCAGAATACCTCCCAAAGACATGGTGATTTGAT-CAT-AATGCTGAA  143

seq1  AAAGTATAGAGTAGGAAAAATACGAAAAGTCATGGTTTTCATATTTATTC  198
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AAAGTATAGAGTAGGAAAAATACG-AAAGTCATGGTTTTCA-ATTTATTC  191

seq1  TTATTTCTACATGAGCAGAAGACTGTATATGTGCAGTAAATACGCTGAAG  248
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTACATGAGCAGAAGACTGTATATGTGCAGTAAATACGCTGAAG  241

seq1  TTCCTAAGCGACACAAGCCTCCATCTGAACTGAGGCTTCACACGGCAGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGCGACACAAGCCTCCATCTGAACTGAGGCTTCACACGGCAGCA  291

seq1  TTTGTTGGTGTCGTGTGGTGTGTGTGGTGCTATGTGGGGTGTTGGCATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGTGTCGTGTGGTGTGTGTGGTGCTATGTGGGGTGTTGGCATGC  341

seq1  CCAGCACAACACTGCATACATGGGTTCCCACCCAGTGCTACAGTGATGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAACACTGCATACATGGGTTCCCACCCAGTGCTACAGTGATGTC  391

seq1  CCACAATGCAACTTGGGCCAGTTCCATTGTTACGGTGATAAACAGCCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGCAACTTGGGCCAGTTCCATTGTTACGGTGATAAACAGCCCTG  441

seq1  ATTGATGTATGGGCTTATTAATGTATATGATATATCTATTATACCTGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTATGGGCTTATTAATGTATATGATATATCTATTATACCTGTAT  491

seq1  TTATATTAATATACATGATGTAATTAATGTATTTGATTTTGAACTAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATATACATGATGTAATTAATGTATTTGATTTTGAACTAATTA  541

seq1  TTGGCTATTGCATACTTGGTAACTTTTTACCATTGCTAAACTTTACCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATTGCATACTTGGTAACTTTTTACCATTGCTAAACTTTACCTGG  591

seq1  CCCCCACATTCACTGTGGGGTCACAACCCACAGTTTATGCAGCTGGACCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACATTCACTGTGGGGTCACAACCCACAGTTTATGCAGCTGGACCA  641

seq1  TAGAATAAACCAACCCATTCAGGACTAGAAGAGCCCTTGGAAGTGCATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAACCAACCCATTCAGGACTAGAAGAGCCCTTGGAAGTGCATCC  691

seq1  TGTTTGTGGAAGGTTGACAGCAGCATCTTATATTGAGCTAAGGGAAGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGAAGGTTGACAGCAGCATCTTATATTGAGCTAAGGGAAGAAC  741

seq1  GCGCTCAGGAAAGTAAAGAAGGGAAGGTAGTCAATAATCATGGGAATCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCAGGAAAGTAAAGAAGGGAAGGTAGTCAATAATCATGGGAATCCT  791

seq1  ACCTAACCAGGCAGTTAATATCCTACTTGCTCACTTGATGTGCCTATTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCAGGCAGTTAATATCCTACTTGCTCACTTGATGTGCCTATTAG  841

seq1  TGCCTATTATGTGGCTGCCATGATTCTTGGTACAACGCACACTGAACAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTATGTGGCTGCCATGATTCTTGGTACAACGCACACTGAACAAA  891

seq1  TACAGCTTCCCCCATGTAGCTAGCTCACATTCTACAATTAATGCTAATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCCCCCATGTAGCTAGCTCACATTCTACAATTAATGCTAATTT  941

seq1  CCTCGTCAGCGAGATTCTTTACCCAGGACCTGAGACTACACACCCATACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCAGCGAGATTCTTTACCCAGGACCTGAGACTACACACCCATACT  991

seq1  GTACACTGGTAGTCTCACGACCTCAAAAAGAAATGCAAACCTCTCTGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGGTAGTCTCACGACCTCAAAAAGAAATGCAAACCTCTCTGGGG  1041

seq1  CAAAGTGAAGCAGACGCAGCACTTCTGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  CAAAGTGAAGCAGACGCAGCACTTCTGAATTC  1073

seq1: chr18_65304994_65305698
seq2: B6Ng01-104M01.g_69_712

seq1  GAATTCAAGCAGGGCAGGAACCTAGAGCCACAAAAGGGTGCTGCTTACTG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGGGCAGGAACCTAGAGCCACAAAAGGGTGCTGCTTACTG  50

seq1  GCAGCTCCTCCTGGCTTGCTCAGCCTGCTTTCTTACAGAAACCAGGACCA  100
      | ||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGAACCTCCTGGCTTGCTCAGCCTGCTTTCTTACAGAAACCAGGACCA  99

seq1  CCAGCTCAGGGATGGCTCCACCCACAGTGGTCTGGGCCCTCCCCCCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCAGGGATGGCTCCACCCACAGTGGTCTGGGCCCTCCCCCCCATC  149

seq1  AATTGCTATCTAAGAAAATGGTCCCAGAGGCTTGTCTCCAGCTTGATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTATCTAAGAAAATGGTCCCAGAGGCTTGTCTCCAGCTTGATCTC  199

seq1  ATGGAGGCATTTTCTCAATTGAAGCTCCCTCTTCTCTGATAATTCCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCATTTTCTCAATTGAAGCTCCCTCTTCTCTGATAATTCCAAAA  249

seq1  GGCTTCAGGCATTCCTGACTCTGTGGGCTTCCCTGTTGTGTTCTTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGGCATTCCTGACTCTGTGGGCTTCCCTGTTGTGTTCTTCAGGT  299

seq1  TAAAACTGGAAAGTCATGCTTTGAGACAACGTTAATCAGTTGGCCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGGAAAGTCATGCTTTGAGACAACGTTAATCAGTTGGCCATTTT  349

seq1  TCATGTGGCGGTCCCCAGACACTCTCTTCCCTACAGTAAGAACCATGCAT  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCGGTTCCCAGACACTCTCTTCCCTACAGTAAGAACCATGCAT  399

seq1  TTGTCAAGGGAAGATATTGACTCATAGTCTTTAGGAGTCATAAGTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGGAAGATATTGACTCATAGTCTTTAGGAGTCATAAGTGAGGA  449

seq1  GCTGGAGAGATGGCTTAGCAGTTTAGAGCATTTGCTGTG-TTCTTCCAGA  499
      ||||||||||||||||| ||||||||||||||||||||| |||||| |||
seq2  GCTGGAGAGATGGCTTATCAGTTTAGAGCATTTGCTGTGTTTCTTCTAGA  499

seq1  CAACCTGAGTTCAGAATGCATCACCCACGTCCAATGGCTCACTGACACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAGTTCAGAATGCATCACCCACGTCCAATGGCTCACTGACACCT  549

seq1  CAAGTCCAACTCCAAGGGTCCTGAGATCTTCTGGGCTCTGCAGGCACTCG  599
      ||||| | ||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGTTCCACTCCAAGGGTCCTGAGATCTTCTGGGCTCTGCAGGCTCTCG  599

seq1  CACATAGCACAGATACGTCTACATGCACAGACACAGGCACAGACACATCA  649
      ||||| | |||||||||||||| ||  |||||||| ||||| ||||    
seq2  CACATTGAACAGATACGTCTACTTGTTCAGACACATGCACA-ACAC----  644

seq1  ACATGTGCAGACACAGATACATGCACATGCATAGACACAGACACATGCAC  699
                                                        
seq2  --------------------------------------------------  644

seq1  AGACAC  705
            
seq2  ------  644