BAC Information

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BAC

Clone NameB6Ng01-104N23
Chromosome18 (Build37)
Map Location 63,616,745 - 63,754,045
singlet/doubletdoublet
Overlap geneLOC627792
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Downstream geneTxnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N23.bB6Ng01-104N23.g
ACCDH913048DH913049
length1,1181,070
definitionDH913048|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N23, 5' end.DH913049|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,616,745 - 63,617,879)(63,752,972 - 63,754,045)
sequence
gaattctgggtaggtataaaactggccaatgtccaatgagaccagagaca
aaacaaacatttttccagtgaaatatagaaattgtcccatcagacagatt
atagaaaatgttaaagaaatccctttattactttttattcagttataagt
caaatttatcatctcaacagcaagaaaaccaaattcaaactttaatatta
tacttggcagtaaaagtttcacaaaaatttcccccttcttatgaataaat
ccatcaaaaaatgaacccaacttgaaagtattctaatgattttattctct
tccagacttgctgttactgatcaaatgaataaggttctctccttgaaacc
ctgtaactttctacattcatttgggttccatttttccctcttagcttaat
ggttttcaacctgtgagtttcaaccccttgtagatcacgagatcctttca
cagaagttgtatattggatattctgcacatcagatacttacaactcataa
cagtagcaaaattacagttatgaagtagcaacaaaaatacttttaaggta
agggatcactacaacctgagtatctatgtcaaagagtcacagtgttagga
agactgagaaccgaatcagaagtctttgcaacaatatcccaactcattct
tatcagttagatgagcaagaatgcattcttcctttgtgcctgtgatttct
gatgttaactttactcagcagaatcgcagccacttagaagtactgttatc
agaaattttctccctttataaatatcttgatcaagttttatgcctcctcc
aaattctcccagattaattccttccttcttatccacccaaccttgtgttt
tctctttatctctgtcaaccctccctaattaacaaataaaataaaaccat
gacacaccaaaacaaaaccaaaaacctccacaaagacaaaaaaataaacc
aacaggaaaagaccagtaagacaaatttccaaacaaagcaaatgaagcaa
aatgattaccacaaaaaaaaataccattgagtctggttttagtgggcact
actctagacatgggtctgccctgataaatgctgataccatgcactctgat
gaagagcaagatgatttt
gaattcccgcaaagaactagagtttggaaaggagccaagaaagaagaaaa
tgtatagaacctaatggcaaattaaagagggcagaagataaagtcatctt
gaagaataatcaacagaagtaatttggtttaaaaaccaaaaaattttgag
gacctaaagaccaagggaaagtattcaaatatcttaacataggtgtaact
gaattcccaggaagtaaggagaggaagaatgaaggagaaaagtttgagaa
aatgcaatcatgcttcctcacatttggatttcaaagacccatgtactata
agatgtgggaagcacagagaattccaaactccgtaaatgaaagacaaacc
aagtgagcagactaaatcttcacatctctagacagcacgactaagcaaca
aaagtaaggggacacatctttgaacacttcacataatgaacatgaaacta
ccgagcttctttgataggaaaaggccaaaccaatctatcagctcagaaat
ctacagctcttccagaaggtgagacatcttggcaggtaaatgtacttgat
gccaagactggtgaactgagtttgattgctaggactcacataatggaagg
agagaaaaaattcctgcaggttgttctctgaccccaacacatgtgccacg
gaatatacatagctcccaccatcaaataagtaattggaattttttaaaaa
gattatttaagaaatctatatggagccaaaatttctattaagaacacaga
attagaaacttttagagaaggtggaaaagtgagaggatttattactatca
aatgttaagcaaaaaggactttcttgaagtaggagggaacatgacccctg
tcagaaacctagaaacaggaaagggaataaaagactggaggatgtcatgt
gtaggtatgactgtttcttttctcttcactctttagtagaaattggcagc
atatcaacagatacagtgctctgatttgagattatacagatatagataat
gatacatggtggatatgaaagaaatgtctgaaaagaatatattggagtca
tactgggcagagatctaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63616745_63617879
seq2: B6Ng01-104N23.b_45_1162

seq1  GAATTCTGGGTAGGTATAAAACTGGCAAATGTCCAATGAGACCAGAGACA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTGGGTAGGTATAAAACTGGCCAATGTCCAATGAGACCAGAGACA  50

seq1  AAACAAACATTTTTCCAGTGAAATATAGAAATTGTCCCATCAGACAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACATTTTTCCAGTGAAATATAGAAATTGTCCCATCAGACAGATT  100

seq1  ATAGAAAATGTTAAAGAAATCCCTTTATTACTTTTTATTCAGTTATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATGTTAAAGAAATCCCTTTATTACTTTTTATTCAGTTATAAGT  150

seq1  CAAATTTATCATCTCAACAGCAAGAAAACCAAATTCAAACTTTAATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATCATCTCAACAGCAAGAAAACCAAATTCAAACTTTAATATTA  200

seq1  TACTTGGCAGTAAAAGTTTCACAAAAATTTCCCCCTTCTTATGAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCAGTAAAAGTTTCACAAAAATTTCCCCCTTCTTATGAATAAAT  250

seq1  CCATCAAAAAATGAACCCAACTTGAAAGTATTCTAATGATTTTATTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAAAATGAACCCAACTTGAAAGTATTCTAATGATTTTATTCTCT  300

seq1  TCCAGACTTGCTGTTACTGATCAAATGAATAAGGTTCTCTCCTTGAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTTGCTGTTACTGATCAAATGAATAAGGTTCTCTCCTTGAAACC  350

seq1  CTGTAACTTTCTACATTCATTTGGGTTCCATTTTTCCCTCTTAGCTTAGT  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTAACTTTCTACATTCATTTGGGTTCCATTTTTCCCTCTTAGCTTAAT  400

seq1  GGTTTTCAACCTGTGAGTTTCAACCCCTTGTAGATCACGAGATCCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAACCTGTGAGTTTCAACCCCTTGTAGATCACGAGATCCTTTCA  450

seq1  CAGAAGTTGTATATTGGATATTCTGCACATCAGATACTTACAACTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTGTATATTGGATATTCTGCACATCAGATACTTACAACTCATAA  500

seq1  CAGTAGCAAAATTACAGTTATGAAGTAGCAACAAAAATACTTTTAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAAAATTACAGTTATGAAGTAGCAACAAAAATACTTTTAAGGTA  550

seq1  AGGGATCACTACAACCTGAGTATCTATGTCAAAGAGTCACAGTGTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACTACAACCTGAGTATCTATGTCAAAGAGTCACAGTGTTAGGA  600

seq1  AGACTGAGAACCGAATCAGAAGTC-TTGCAACAATATCCCACCTCATTCT  649
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AGACTGAGAACCGAATCAGAAGTCTTTGCAACAATATCCCAACTCATTCT  650

seq1  TATCAGTTAGATGAGCAAGAATGCATTCTTCCTTTGTGCCTGTGATTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTAGATGAGCAAGAATGCATTCTTCCTTTGTGCCTGTGATTTCT  700

seq1  GATGTTAACTTTACTCAGCAGAATCGCAGCCACTTAGAAGTACTGTTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAACTTTACTCAGCAGAATCGCAGCCACTTAGAAGTACTGTTATC  750

seq1  AGAAATTTTCTCCCTTTATAAATATCTTGATCAAGTTTTATGCCTCCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTCTCCCTTTATAAATATCTTGATCAAGTTTTATGCCTCCTCC  800

seq1  AAATTCTCCCAGATTAATTCCTTCCTTCTTATCCACCCAACCTTGTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCCAGATTAATTCCTTCCTTCTTATCCACCCAACCTTGTGTTT  850

seq1  TCTCTTTATCTCTGTCAACCCTCCCTAATTAAACAAATAAAATAAAACCA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCTTTATCTCTGTCAACCCTCCCTAATT-AACAAATAAAATAAAACCA  899

seq1  TGACAACAACAAAAACAAAAACAAAAAACCTCCACAAAGACAAAAAATTA  949
      |||| ||| |||||   ||||| |||||||||||||||||||||||| | 
seq2  TGAC-ACACCAAAA--CAAAACCAAAAACCTCCACAAAGACAAAAAAAT-  945

seq1  AAACCAACAGGAAAAAGACCAGTAAGACAAAAATTTCCAAAACAAAGCAA  999
      ||||||||||| ||||||||||||||||  |||||||| ||||||||| |
seq2  AAACCAACAGG-AAAAGACCAGTAAGAC--AAATTTCC-AAACAAAGC-A  990

seq1  AATGAAACAAAATGATTACCACAAAAAAAAAATACCATTGAGTTTGTTTT  1049
      |||||| ||||||||||||||| |||||||||||||||||||| || |||
seq2  AATGAAGCAAAATGATTACCAC-AAAAAAAAATACCATTGAGTCTGGTTT  1039

seq1  TAGTTGGCCAACTACTCTTGGACATGGGGCCTGCCCTGGATATATGCTTG  1099
      |||| |||  ||||||| | ||||| ||| ||||||| |||| |||| ||
seq2  TAGTGGGC--ACTACTC-TAGACAT-GGGTCTGCCCT-GATAAATGC-TG  1083

seq1  ATACCCAGTGGCACTCTGATGA--AGCAAGATGATTTT  1135
      |||||     ||||||||||||  ||||||||||||||
seq2  ATACC---ATGCACTCTGATGAAGAGCAAGATGATTTT  1118

seq1: chr18_63752972_63754045
seq2: B6Ng01-104N23.g_69_1138 (reverse)

seq1  CATTAAGATCTCTTGCCCCAGTATGACTCCAATTATATTCTTTGTCAGAC  50
      |||| ||||||||   |||||||||||||||| |||||||||| ||||||
seq2  CATT-AGATCTCT--GCCCAGTATGACTCCAA-TATATTCTTT-TCAGAC  45

seq1  ATTTTCTTTCATATCCACCATGTTATCATTTATCTATATCTGTTATAAAT  100
      | |||||||||||||||||||| ||||| ||||||||||||| ||| |||
seq2  A-TTTCTTTCATATCCACCATG-TATCA-TTATCTATATCTG-TAT-AAT  90

seq1  CTCAAATCAGAGCACTGTATCTGTTGATATGCTGCCAATTTTCTACTAAA  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAAATCAGAGCACTGTATCTGTTGATATGCTGCCAA-TTTCTACTAAA  139

seq1  GAAGTGAAGAGGAAAAGAAACAGTCATTACTTACACATGACAT-CTTCAG  199
      | |||||||| ||||||||||||||| ||| |||||||||||| || |||
seq2  G-AGTGAAGA-GAAAAGAAACAGTCA-TACCTACACATGACATCCTCCAG  186

seq1  TC-TTTATTCC--TTCCTGTTTCTAGGTTTCTGACAGGGGTCATGTTCCC  246
      || ||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTCCCTTTCCTGTTTCTAGGTTTCTGACAGGGGTCATGTTCCC  236

seq1  T-CTACTTCAAG-AAGT-CTTTTTGC-TAACATTTGATAGTAATAAATCC  292
      | |||||||||| |||| |||||||| |||||||||||||||||||||||
seq2  TCCTACTTCAAGAAAGTCCTTTTTGCTTAACATTTGATAGTAATAAATCC  286

seq1  TCTCACTTTTC--ACTTCTCTAAAAGTTTCTAATTCTGTGTTCTTAATAG  340
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTTCCACCTTCTCTAAAAGTTTCTAATTCTGTGTTCTTAATAG  336

seq1  AAATTTTGGCTACATATAGATTTCTTAAATAATCTTTTTAAAAAATTACA  390
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AAATTTTGGCTCCATATAGATTTCTTAAATAATCTTTTTAAAAAATTCCA  386

seq1  ATTACTTATTTGATGGTGGGAGCTATGTATATTCCGTGGCACATGTGTTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATTTGATGGTGGGAGCTATGTATATTCCGTGGCACATGTGTTG  436

seq1  GGGTCAGAGAACAACCTGCAGGAATTTTTTCTCTCCTTCCATTATGTGAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAGAACAACCTGCAGGAATTTTTTCTCTCCTTCCATTATGTGAG  486

seq1  TCCTAGCAATCAAACTCAGTTCACCAGTCTTGGCATCAAGTACATTTACC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAATCAAACTCAGTTCACCAGTCTTGGCATCAAGTACATTTACC  536

seq1  TGCCAAGATGTCTCACCTTCTGGAAGAGCTGTAGATTTCTGAGCTGATAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGATGTCTCACCTTCTGGAAGAGCTGTAGATTTCTGAGCTGATAG  586

seq1  ATTGGTTTGGCCTTTTCCTATCAAAGAAGCTCGGTAGTTTCATGTTCATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTGGCCTTTTCCTATCAAAGAAGCTCGGTAGTTTCATGTTCATT  636

seq1  ATGTGAAGTGTTCAAAGATGTGTCCCCTTACTTTTGTTGCTTAGTCGTGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGTGTTCAAAGATGTGTCCCCTTACTTTTGTTGCTTAGTCGTGC  686

seq1  TGTCTAGAGATGTGAAGATTTAGTCTGCTCACTTGGTTTGTCTTTCATTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGAGATGTGAAGATTTAGTCTGCTCACTTGGTTTGTCTTTCATTT  736

seq1  ACGGAGTTTGGAATTCTCTGTGCTTCCCACATCTTATAGTACATGGGTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTTTGGAATTCTCTGTGCTTCCCACATCTTATAGTACATGGGTCT  786

seq1  TTGAAATCCAAATGTGAGGAAGCATGATTGCATTTTCTCAAACTTTTCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCAAATGTGAGGAAGCATGATTGCATTTTCTCAAACTTTTCTC  836

seq1  CTTCATTCTTCCTCTCCTTACTTCCTGGGAATTCAGTTACACCTATGTTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTTCCTCTCCTTACTTCCTGGGAATTCAGTTACACCTATGTTA  886

seq1  AGATATTTGAATACTTTCCCTTGGTCTTTAGGTCCTCAAAATTTTTTGGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGAATACTTTCCCTTGGTCTTTAGGTCCTCAAAATTTTTTGGT  936

seq1  TTTTAAACCAAATTACTTCTGTTGATTATTCTTCAAGATGACTTTATCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACCAAATTACTTCTGTTGATTATTCTTCAAGATGACTTTATCTT  986

seq1  CTGCCCTCTTTAATTTGCCATTAGGTTCTATACATTTTCTTCTTTCTTGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTTTAATTTGCCATTAGGTTCTATACATTTTCTTCTTTCTTGG  1036

seq1  CTCCTTTCCAAACTCTAGTTCTTTGCTGGAATTC  1074
      |||||||||||||||||||||||||| |||||||
seq2  CTCCTTTCCAAACTCTAGTTCTTTGCGGGAATTC  1070