BAC Information

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BAC

Clone NameB6Ng01-105M11
Chromosome18 (Build37)
Map Location 16,510,862 - 16,623,811
singlet/doubletdoublet
Overlap genenone
Upstream geneAqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105M11.bB6Ng01-105M11.g
ACCDH913706DH913707
length428956
definitionDH913706|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M11, 5' end.DH913707|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,623,394 - 16,623,811)(16,510,862 - 16,511,821)
sequence
tcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagc
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccact
tcactccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaagaggaacctatgggtatgtctggagatgatt
ctatttgttggcatcaggacctctgaaacctgtgacaacacataggcagc
agagcaacatatatacctgttgccaagacaacagccacatattcccagaa
tccattgggctcacctcacacctttacctgtaactgtgtcaccatccaca
tatattaagagaaatctctctctccctctctctctctctctctctctctc
tctctctctctcacacacacacacacac
gaattctgcattgagtagaacctgagcctatgagccttcaaagcctgcct
ccataatgatatgcttcctccaacaaagccatgccaatttcaacaaagcc
acacctcctaatagtgacatttcccatgggtcaagcatattcaaaccacc
accctaggtaagccacgagaaacgaccaaagaagaggaaacaagcataga
ttttttcatttgcttagttgtatttcctaccatttgtgacttagaaaaat
tcattaagccatcttgattaaagaaatagtcatttactagctagctatgc
attatgctgtaagcctagagcactggcatttttgtgaggtttagaacatt
ctgagcaaaatgtctttcaaaaatcaaacaacaccccccccccaaaagaa
agaagtagcaaagaagagagaagatatgaggagaggtgagggttactaaa
aatcaaaagccattataagggatattataatagctctgtttcctatttcc
catagttcagctcttgggaaacttacttagtagattgtatttttttaaaa
aaaaagcttaatagtcctaaataaaatggtattaatcaggttgcttttat
tataacaaaatccatgtacaattaacttctgagaagaaaggggtatttcc
ctgaagcctccagccacgtcctccacccaacccacccctccacacacact
gctctatttcttacagatttgggagttccaattcatgagcaattgcccta
ctgttttggatctatgataaggcagcatagcacactgtggtggaagtatt
tggtagaaattagtcacctttatcaccaggaagcaaatagtatgaagaga
ctgggttcccaagatcaccttgctaagcatacccaatggtctaaaacttt
ctacagaccctacttcttttgatgttataaaggcttattcgggttttttt
tttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16623394_16623811
seq2: B6Ng01-105M11.b_44_461 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGATT  50

seq1  TCTCTTAATATATGTGGATGGTGACACAGTTACAGGTAAAGGTGTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATATATGTGGATGGTGACACAGTTACAGGTAAAGGTGTGAGGT  100

seq1  GAGCCCAATGGATTCTGGGAATATGTGGCTGTTGTCTTGGCAACAGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAATGGATTCTGGGAATATGTGGCTGTTGTCTTGGCAACAGGTAT  150

seq1  ATATGTTGCTCTGCTGCCTATGTGTTGTCACAGGTTTCAGAGGTCCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCTCTGCTGCCTATGTGTTGTCACAGGTTTCAGAGGTCCTGAT  200

seq1  GCCAACAAATAGAATCATCTCCAGACATACCCATAGGTTCCTCTTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAATAGAATCATCTCCAGACATACCCATAGGTTCCTCTTTCTCC  250

seq1  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  300

seq1  TGACTGGAGTGAAGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAGTGAAGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  350

seq1  ATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCGGTA  400

seq1  TTCCTCAGGTGAGAATTC  418
      ||||||||||||||||||
seq2  TTCCTCAGGTGAGAATTC  418

seq1: chr18_16510862_16511821
seq2: B6Ng01-105M11.g_69_1024

seq1  GAATTCTGCATTGAGTAGAACCTGAGCCTATGAGCCTTCAAAGCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTGAGTAGAACCTGAGCCTATGAGCCTTCAAAGCCTGCCT  50

seq1  CCATAATGATATGCTTCCTCCAACAAAGCCATGCCAATTTCAACAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGATATGCTTCCTCCAACAAAGCCATGCCAATTTCAACAAAGCC  100

seq1  ACACCTCCTAATAGTGACATTTCCCATGGGTCAAGCATATTCAAACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTAATAGTGACATTTCCCATGGGTCAAGCATATTCAAACCACC  150

seq1  ACCCTAGGTAAGCCACGAGAAACGACCAAAGAAGAGGAAACAAGCATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGTAAGCCACGAGAAACGACCAAAGAAGAGGAAACAAGCATAGA  200

seq1  TTTTTTCATTTGCTTAGTTGTATTTCCTACCATTTGTGACTTAGAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATTTGCTTAGTTGTATTTCCTACCATTTGTGACTTAGAAAAAT  250

seq1  TCATTAAGCCATCTTGATTAAAGAAATAGTCATTTACTAGCTAGCTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGCCATCTTGATTAAAGAAATAGTCATTTACTAGCTAGCTATGC  300

seq1  ATTATGCTGTAAGCCTAGAGCACTGGCATTTTTGTGAGGTTTAGAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTGTAAGCCTAGAGCACTGGCATTTTTGTGAGGTTTAGAACATT  350

seq1  CTGAGCAAAATGTCTTTCAAAAATCAAACAACACCCCCCCCCCAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAAATGTCTTTCAAAAATCAAACAACACCCCCCCCCCAAAAGAA  400

seq1  AGAAGTAGCAAAGAAGAGAGAAGATATGAGGAGAGGTGAGGGTTACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGCAAAGAAGAGAGAAGATATGAGGAGAGGTGAGGGTTACTAAA  450

seq1  AATCAAAAGCCATTATAAGGGATATTATAATAGCTCTGTTTCCTATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGCCATTATAAGGGATATTATAATAGCTCTGTTTCCTATTTCC  500

seq1  CATAGTTCAGCTCTTGGGAAACTTACTTAGTAGATTGTATTTTTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAGCTCTTGGGAAACTTACTTAGTAGATTGTATTTTTTTAAAA  550

seq1  AAAAAGCTTAATAGTCCTAAATAAAATGGTATTAATCAGGTTGCTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTTAATAGTCCTAAATAAAATGGTATTAATCAGGTTGCTTTTAT  600

seq1  TATAACAAAATCCATGTACAATTAACTTCTGAGAAGAAAGGGGTATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAAATCCATGTACAATTAACTTCTGAGAAGAAAGGGGTATTTCC  650

seq1  CTGAAGCCTCCAGCCACGTCCTCCACCCAACCCACCCCTCCACACACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTCCAGCCACGTCCTCCACCCAACCCACCCCTCCACACACACT  700

seq1  GCTCTATTTCTTACAGATTTGGGAGTTCCAATTCATGAGCAATTGCCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTCTTACAGATTTGGGAGTTCCAATTCATGAGCAATTGCCCTA  750

seq1  CTGTTTTGGATCTATGATAAGGCAGCATAGCACACTGTGGTGGAAGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGGATCTATGATAAGGCAGCATAGCACACTGTGGTGGAAGTATT  800

seq1  TGGTAGAAATTAGTCACCTTTATCACCAGGAAGCAAATAGTATGAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAATTAGTCACCTTTATCACCAGGAAGCAAATAGTATGAAGAGA  850

seq1  CTGGGTTCCCAAGATCACCTTGCTAAGCATACCCAATGGTCTAAAAACCT  900
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  CTGGGTTCCCAAGATCACCTTGCTAAGCATACCCAATGGTCT-AAAACTT  899

seq1  TCTACAAGACCCTACTTCTTTTGATGTTAATAAAGGCTTATTTCGGGTTT  950
      ||||| |||||||||||||||||||||| ||||||||||| |||||||||
seq2  TCTAC-AGACCCTACTTCTTTTGATGTT-ATAAAGGCTTA-TTCGGGTTT  946

seq1  TTTTTTTTTT  960
      ||||||||||
seq2  TTTTTTTTTT  956